Wall clock time and date at job start Tue Mar 31 2020 16:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.47557 * 2 1 4 4 C 1.38240 * 119.99904 * 269.72798 * 3 2 1 5 5 C 1.38230 * 119.99717 * 179.80568 * 4 3 2 6 6 C 1.38239 * 120.00010 * 0.41956 * 5 4 3 7 7 C 1.50699 * 119.99788 * 179.78948 * 6 5 4 8 8 H 1.09001 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47424 * 300.01979 * 7 6 5 10 10 C 1.50701 * 109.47131 * 60.02378 * 7 6 5 11 11 O 1.21280 * 120.00314 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99840 * 179.97438 * 10 7 6 13 13 C 1.46507 * 119.99824 * 179.97438 * 12 10 7 14 14 C 1.53041 * 109.45856 * 275.07151 * 13 12 10 15 15 C 1.53191 * 109.31215 * 178.61880 * 14 13 12 16 16 N 1.46927 * 108.77791 * 54.62535 * 15 14 13 17 17 C 1.36938 * 120.62688 * 126.41507 * 16 15 14 18 18 H 1.08005 * 120.00032 * 331.82868 * 17 16 15 19 19 C 1.38813 * 120.00262 * 151.82636 * 17 16 15 20 20 N 1.31620 * 119.99537 * 343.08107 * 19 17 16 21 21 Si 1.86796 * 120.00250 * 163.08225 * 19 17 16 22 22 H 1.48499 * 109.47308 * 59.99902 * 21 19 17 23 23 H 1.48500 * 109.47165 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46932 * 299.99846 * 21 19 17 25 25 C 1.46923 * 118.74484 * 306.39992 * 16 15 14 26 26 C 1.53044 * 109.45781 * 155.00295 * 13 12 10 27 27 C 1.38235 * 119.99985 * 359.81112 * 6 5 4 28 28 C 1.38230 * 119.99980 * 0.02562 * 27 6 5 29 29 H 1.08995 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47098 * 300.00414 * 1 2 3 31 31 H 1.09003 * 109.47281 * 59.99865 * 1 2 3 32 32 H 1.09003 * 109.47281 * 120.00135 * 2 1 3 33 33 H 1.09001 * 109.47012 * 240.00107 * 2 1 3 34 34 H 1.08000 * 119.99707 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.99989 * 180.20776 * 5 4 3 36 36 H 1.08995 * 109.47547 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.47377 * 300.00746 * 9 7 6 38 38 H 1.09007 * 109.47024 * 60.00500 * 9 7 6 39 39 H 0.96998 * 120.00389 * 359.97438 * 12 10 7 40 40 H 1.08991 * 109.45710 * 35.02914 * 13 12 10 41 41 H 1.09006 * 109.49690 * 298.56163 * 14 13 12 42 42 H 1.08991 * 109.49874 * 58.66227 * 14 13 12 43 43 H 1.09005 * 109.58260 * 294.84764 * 15 14 13 44 44 H 1.08999 * 109.70781 * 174.49280 * 15 14 13 45 45 H 0.96998 * 119.99605 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58569 * 293.81650 * 25 16 15 47 47 H 1.08994 * 109.70684 * 173.45971 * 25 16 15 48 48 H 1.09003 * 109.49731 * 301.33770 * 26 13 12 49 49 H 1.09003 * 109.49952 * 61.40294 * 26 13 12 50 50 H 1.08002 * 119.99773 * 179.97438 * 27 6 5 51 51 H 1.08001 * 119.99930 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1972 5 6 2.7252 3.3751 -1.1972 6 6 2.9547 4.0271 0.0000 7 6 3.4575 5.4477 0.0000 8 1 3.5782 5.7904 1.0277 9 6 4.8057 5.5116 -0.7205 10 6 2.4655 6.3317 -0.7111 11 8 1.4500 5.8551 -1.1720 12 7 2.7064 7.6520 -0.8339 13 6 1.7422 8.5113 -1.5257 14 6 2.0110 8.4696 -3.0318 15 6 0.9798 9.3417 -3.7548 16 7 1.0103 10.6906 -3.1733 17 6 1.1822 11.7904 -3.9709 18 1 1.7288 11.7047 -4.8985 19 6 0.6538 13.0154 -3.5874 20 7 -0.2763 13.0688 -2.6577 21 14 1.2627 14.5880 -4.3909 22 1 1.0065 14.5285 -5.8524 23 1 0.5456 15.7509 -3.8090 24 1 2.7206 14.7348 -4.1494 25 6 0.8527 10.8373 -1.7199 26 6 1.8854 9.9485 -1.0198 27 6 2.7235 3.3757 1.1972 28 6 2.2632 2.0723 1.1971 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 2.0919 1.5601 -2.1325 35 1 2.9062 3.8839 -2.1325 36 1 5.1691 6.5392 -0.7209 37 1 5.5232 4.8722 -0.2062 38 1 4.6850 5.1689 -1.7482 39 1 3.5180 8.0334 -0.4643 40 1 0.7313 8.1555 -1.3275 41 1 3.0130 8.8486 -3.2331 42 1 1.9319 7.4423 -3.3871 43 1 -0.0142 8.9122 -3.6292 44 1 1.2232 9.3954 -4.8159 45 1 -0.6453 13.9248 -2.3894 46 1 -0.1516 10.5298 -1.4285 47 1 1.0132 11.8773 -1.4359 48 1 1.7169 9.9737 0.0568 49 1 2.8888 10.3134 -1.2396 50 1 2.9032 3.8850 2.1325 51 1 2.0829 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328590.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:52 Heat of formation + Delta-G solvation = -14.101841 kcal Electronic energy + Delta-G solvation = -28198.277335 eV Core-core repulsion = 24482.927156 eV Total energy + Delta-G solvation = -3715.350179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.39037 -39.11030 -37.36032 -35.18692 -34.40739 -32.94669 -31.89808 -30.99635 -30.11548 -29.40954 -28.55859 -25.42517 -24.76684 -23.32547 -22.84357 -22.25410 -21.81892 -20.76719 -19.85741 -19.17062 -17.22157 -16.70729 -16.45755 -15.74270 -15.63948 -15.06071 -14.82267 -14.70387 -14.09300 -14.00937 -13.82280 -13.61877 -13.52330 -13.44999 -13.29004 -13.06422 -12.90736 -12.68514 -12.37945 -12.37287 -11.98517 -11.78284 -11.63306 -11.46216 -11.32678 -11.11963 -10.92781 -10.90799 -10.84666 -10.71901 -10.48797 -10.28158 -10.03827 -9.83606 -9.65967 -9.41137 -8.92834 -8.68307 -8.59288 -8.45324 -6.68559 -5.79760 -3.22097 1.23416 1.38173 2.81529 3.33253 3.38506 3.43646 3.44708 3.76775 4.40172 4.49158 4.58755 4.64217 4.76219 4.89747 4.96156 5.05687 5.11550 5.14045 5.31054 5.33625 5.37057 5.41288 5.44204 5.49126 5.52185 5.58907 5.63338 5.64366 5.74221 5.88245 5.88753 5.92347 5.99926 6.02518 6.07987 6.27933 6.34397 6.35347 6.53150 6.53325 6.55488 6.56724 6.60264 6.79901 6.93542 6.94359 6.99641 7.31444 7.59763 7.74994 7.79929 8.43696 8.44905 9.20469 9.83673 10.40942 11.29159 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.002185 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.891323 B =12814.046294 C =13132.122742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.120 4.120 5 C -0.079 4.079 6 C -0.068 4.068 7 C -0.073 4.073 8 H 0.101 0.899 9 C -0.140 4.140 10 C 0.513 3.487 11 O -0.532 6.532 12 N -0.724 5.724 13 C 0.151 3.849 14 C -0.137 4.137 15 C 0.147 3.853 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.174 3.826 26 C -0.146 4.146 27 C -0.110 4.110 28 C -0.122 4.122 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.395 0.605 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.055 0.945 45 H 0.255 0.745 46 H 0.020 0.980 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.059 0.941 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.512 -22.149 8.940 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.068 4.068 7 C -0.095 4.095 8 H 0.119 0.881 9 C -0.197 4.197 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.374 5.374 13 C 0.048 3.952 14 C -0.178 4.178 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.186 4.186 27 C -0.128 4.128 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.228 0.772 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.656 -22.321 8.646 25.454 hybrid contribution 0.619 1.144 -0.136 1.307 sum 9.275 -21.178 8.510 24.636 Atomic orbital electron populations 1.21750 0.94721 1.01519 1.02499 1.20527 0.96241 0.92771 1.02548 1.19867 0.99143 0.96217 0.93270 1.20969 1.00429 0.94950 0.97427 1.20890 0.97209 0.93938 0.97631 1.19288 1.00120 0.93859 0.93577 1.20319 0.95441 0.92310 1.01405 0.88090 1.21784 0.94369 1.02658 1.00914 1.20402 0.87106 0.82692 0.79952 1.90723 1.27681 1.74081 1.48332 1.46342 1.24913 1.07722 1.58409 1.21028 0.92497 0.89810 0.91865 1.22355 1.00969 0.99503 0.94942 1.20872 0.94951 0.86159 0.95972 1.44079 1.84598 1.00716 1.02131 1.19145 1.27803 0.87058 1.04201 0.91710 1.25061 0.96467 0.98780 0.99395 1.70018 1.26658 1.24496 1.33605 0.86357 0.78366 0.82991 0.78978 1.20869 1.21644 1.21061 1.20732 0.93021 0.98857 0.82604 1.22532 1.02603 0.94213 0.99273 1.20959 0.99779 0.94937 0.97135 1.20892 1.00860 0.94910 0.97370 0.92535 0.92534 0.92398 0.91257 0.91193 0.86324 0.86311 0.91624 0.91387 0.91814 0.77191 0.90147 0.92389 0.92839 0.96252 0.92600 0.93545 0.96155 0.89056 0.92805 0.92209 0.86278 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.15 0.37 -0.77 16 2 C -0.08 -0.65 6.07 -27.89 -0.17 -0.82 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 5 C -0.08 -0.97 7.93 -39.58 -0.31 -1.28 16 6 C -0.07 -0.80 4.40 -104.62 -0.46 -1.26 16 7 C -0.07 -0.77 2.90 -92.93 -0.27 -1.04 16 8 H 0.10 0.87 7.88 -51.93 -0.41 0.46 16 9 C -0.14 -1.18 8.90 37.16 0.33 -0.85 16 10 C 0.51 7.35 6.99 -10.98 -0.08 7.27 16 11 O -0.53 -9.83 14.77 5.56 0.08 -9.75 16 12 N -0.72 -9.95 4.97 -53.76 -0.27 -10.22 16 13 C 0.15 2.63 2.42 -67.88 -0.16 2.47 16 14 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 15 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 16 N -0.59 -14.85 2.99 -172.32 -0.52 -15.37 16 17 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 20 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 21 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 26 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 27 C -0.11 -1.16 9.67 -39.59 -0.38 -1.54 16 28 C -0.12 -1.22 9.70 -39.59 -0.38 -1.61 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.08 -51.93 -0.42 0.07 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.49 7.52 -52.49 -0.39 1.10 16 36 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 39 H 0.39 4.31 8.02 -40.82 -0.33 3.99 16 40 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.12 1.01 7.95 -52.49 -0.42 0.59 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -31.88 403.85 -10.94 -42.82 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.91 Total: 3.24 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.02 Total: -7.85 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.16 Total: -51.07 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.88 -10.94 -42.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328590.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.721 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds