Wall clock time and date at job start Tue Mar 31 2020 16:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.47557 * 2 1 4 4 C 1.38240 * 119.99904 * 269.72798 * 3 2 1 5 5 C 1.38230 * 119.99717 * 179.80568 * 4 3 2 6 6 C 1.38239 * 120.00010 * 0.41956 * 5 4 3 7 7 C 1.50699 * 119.99788 * 179.78948 * 6 5 4 8 8 H 1.09001 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47424 * 300.01979 * 7 6 5 10 10 C 1.50701 * 109.47131 * 60.02378 * 7 6 5 11 11 O 1.21280 * 120.00314 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99840 * 179.97438 * 10 7 6 13 13 C 1.46507 * 119.99824 * 179.97438 * 12 10 7 14 14 C 1.53041 * 109.45856 * 275.07151 * 13 12 10 15 15 C 1.53191 * 109.31215 * 178.61880 * 14 13 12 16 16 N 1.46927 * 108.77791 * 54.62535 * 15 14 13 17 17 C 1.36938 * 120.62688 * 126.41507 * 16 15 14 18 18 H 1.08005 * 120.00032 * 331.82868 * 17 16 15 19 19 C 1.38813 * 120.00262 * 151.82636 * 17 16 15 20 20 N 1.31620 * 119.99537 * 343.08107 * 19 17 16 21 21 Si 1.86796 * 120.00250 * 163.08225 * 19 17 16 22 22 H 1.48499 * 109.47308 * 59.99902 * 21 19 17 23 23 H 1.48500 * 109.47165 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46932 * 299.99846 * 21 19 17 25 25 C 1.46923 * 118.74484 * 306.39992 * 16 15 14 26 26 C 1.53044 * 109.45781 * 155.00295 * 13 12 10 27 27 C 1.38235 * 119.99985 * 359.81112 * 6 5 4 28 28 C 1.38230 * 119.99980 * 0.02562 * 27 6 5 29 29 H 1.08995 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47098 * 300.00414 * 1 2 3 31 31 H 1.09003 * 109.47281 * 59.99865 * 1 2 3 32 32 H 1.09003 * 109.47281 * 120.00135 * 2 1 3 33 33 H 1.09001 * 109.47012 * 240.00107 * 2 1 3 34 34 H 1.08000 * 119.99707 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.99989 * 180.20776 * 5 4 3 36 36 H 1.08995 * 109.47547 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.47377 * 300.00746 * 9 7 6 38 38 H 1.09007 * 109.47024 * 60.00500 * 9 7 6 39 39 H 0.96998 * 120.00389 * 359.97438 * 12 10 7 40 40 H 1.08991 * 109.45710 * 35.02914 * 13 12 10 41 41 H 1.09006 * 109.49690 * 298.56163 * 14 13 12 42 42 H 1.08991 * 109.49874 * 58.66227 * 14 13 12 43 43 H 1.09005 * 109.58260 * 294.84764 * 15 14 13 44 44 H 1.08999 * 109.70781 * 174.49280 * 15 14 13 45 45 H 0.96998 * 119.99605 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58569 * 293.81650 * 25 16 15 47 47 H 1.08994 * 109.70684 * 173.45971 * 25 16 15 48 48 H 1.09003 * 109.49731 * 301.33770 * 26 13 12 49 49 H 1.09003 * 109.49952 * 61.40294 * 26 13 12 50 50 H 1.08002 * 119.99773 * 179.97438 * 27 6 5 51 51 H 1.08001 * 119.99930 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1972 5 6 2.7252 3.3751 -1.1972 6 6 2.9547 4.0271 0.0000 7 6 3.4575 5.4477 0.0000 8 1 3.5782 5.7904 1.0277 9 6 4.8057 5.5116 -0.7205 10 6 2.4655 6.3317 -0.7111 11 8 1.4500 5.8551 -1.1720 12 7 2.7064 7.6520 -0.8339 13 6 1.7422 8.5113 -1.5257 14 6 2.0110 8.4696 -3.0318 15 6 0.9798 9.3417 -3.7548 16 7 1.0103 10.6906 -3.1733 17 6 1.1822 11.7904 -3.9709 18 1 1.7288 11.7047 -4.8985 19 6 0.6538 13.0154 -3.5874 20 7 -0.2763 13.0688 -2.6577 21 14 1.2627 14.5880 -4.3909 22 1 1.0065 14.5285 -5.8524 23 1 0.5456 15.7509 -3.8090 24 1 2.7206 14.7348 -4.1494 25 6 0.8527 10.8373 -1.7199 26 6 1.8854 9.9485 -1.0198 27 6 2.7235 3.3757 1.1972 28 6 2.2632 2.0723 1.1971 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 2.0919 1.5601 -2.1325 35 1 2.9062 3.8839 -2.1325 36 1 5.1691 6.5392 -0.7209 37 1 5.5232 4.8722 -0.2062 38 1 4.6850 5.1689 -1.7482 39 1 3.5180 8.0334 -0.4643 40 1 0.7313 8.1555 -1.3275 41 1 3.0130 8.8486 -3.2331 42 1 1.9319 7.4423 -3.3871 43 1 -0.0142 8.9122 -3.6292 44 1 1.2232 9.3954 -4.8159 45 1 -0.6453 13.9248 -2.3894 46 1 -0.1516 10.5298 -1.4285 47 1 1.0132 11.8773 -1.4359 48 1 1.7169 9.9737 0.0568 49 1 2.8888 10.3134 -1.2396 50 1 2.9032 3.8850 2.1325 51 1 2.0829 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328590.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:50 Heat of formation + Delta-G solvation = -31.024971 kcal Electronic energy + Delta-G solvation = -28199.011177 eV Core-core repulsion = 24482.927156 eV Total energy + Delta-G solvation = -3716.084021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.42940 -40.12979 -38.91425 -36.11836 -35.88644 -34.12443 -33.31663 -31.80329 -31.75321 -31.10080 -29.35132 -27.05326 -25.77540 -24.43677 -23.91192 -23.65207 -23.21065 -21.70256 -21.18604 -20.57392 -18.88376 -17.86263 -17.63676 -16.95808 -16.63993 -16.47694 -15.97871 -15.84599 -15.55339 -15.36886 -14.97788 -14.80862 -14.66819 -14.53890 -14.35130 -14.16124 -14.08249 -13.97743 -13.66358 -13.24783 -13.19578 -13.01402 -12.73163 -12.58426 -12.55823 -12.51445 -12.31931 -12.22564 -12.05126 -12.00575 -11.88997 -11.65773 -11.62213 -11.55683 -11.35462 -10.68832 -10.56101 -9.97983 -9.74451 -9.38973 -8.72277 -7.88756 -5.34945 0.42945 0.56982 1.48368 1.50095 1.57423 1.69785 2.22375 2.51325 2.91609 3.27010 3.58914 3.64080 3.77940 3.88645 3.95626 4.01063 4.07656 4.14964 4.21852 4.29685 4.32233 4.42460 4.44694 4.52135 4.59606 4.63076 4.70350 4.72836 4.80130 4.83937 4.85871 4.92784 5.02598 5.03567 5.06008 5.07440 5.14072 5.18764 5.23935 5.27179 5.28817 5.37984 5.45465 5.54957 5.58331 5.63143 5.69653 5.73714 5.76680 6.16432 6.37610 6.65318 7.13114 7.33945 7.82389 8.35716 9.18228 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.002185 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.891323 B =12814.046294 C =13132.122742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.099 4.099 6 C -0.085 4.085 7 C -0.063 4.063 8 H 0.129 0.871 9 C -0.136 4.136 10 C 0.512 3.488 11 O -0.578 6.578 12 N -0.710 5.710 13 C 0.163 3.837 14 C -0.121 4.121 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.067 0.933 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.178 3.822 26 C -0.128 4.128 27 C -0.116 4.116 28 C -0.128 4.128 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.413 0.587 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.003 0.997 44 H 0.057 0.943 45 H 0.251 0.749 46 H -0.008 1.008 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.142 0.858 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 -23.192 10.258 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.084 4.084 8 H 0.147 0.853 9 C -0.193 4.193 10 C 0.300 3.700 11 O -0.457 6.457 12 N -0.362 5.362 13 C 0.058 3.942 14 C -0.161 4.161 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.052 3.948 26 C -0.167 4.167 27 C -0.134 4.134 28 C -0.146 4.146 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.250 0.750 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.010 0.990 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.160 0.840 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.007 -23.385 9.974 27.704 hybrid contribution -0.176 1.381 -0.569 1.504 sum 10.831 -22.004 9.405 26.266 Atomic orbital electron populations 1.21743 0.94791 1.02336 1.01531 1.20571 0.96052 0.91507 1.03738 1.20183 0.98516 0.97361 0.92992 1.21169 1.00807 0.94921 0.98435 1.20946 0.98494 0.94644 0.97634 1.19491 1.00757 0.94513 0.93759 1.20335 0.94896 0.90730 1.02432 0.85328 1.21796 0.93447 1.04018 1.00087 1.21126 0.87066 0.82703 0.79153 1.90712 1.29886 1.74842 1.50236 1.46051 1.24825 1.07382 1.57917 1.20594 0.92174 0.89806 0.91582 1.22139 1.00047 0.98715 0.95228 1.20960 0.95316 0.85355 0.96555 1.44341 1.84775 1.01376 1.02724 1.19484 1.27417 0.88022 1.04553 0.91488 1.25850 0.96693 1.01756 1.00307 1.70185 1.27969 1.24822 1.35199 0.85297 0.78005 0.78809 0.78046 1.20315 1.22063 1.20022 1.20563 0.93282 0.98391 0.82574 1.22250 1.01166 0.93416 0.99913 1.21280 0.99228 0.95327 0.97587 1.21243 1.00153 0.94987 0.98225 0.90843 0.93013 0.93842 0.89613 0.90469 0.85705 0.87703 0.90063 0.89619 0.93149 0.74974 0.92954 0.91344 0.92483 0.97871 0.92448 0.93990 0.99026 0.91791 0.90518 0.90962 0.84042 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.89 71.98 0.71 -1.37 16 2 C -0.08 -1.12 6.07 29.85 0.18 -0.94 16 3 C -0.09 -1.73 5.13 -19.86 -0.10 -1.83 16 4 C -0.14 -3.01 9.70 22.27 0.22 -2.79 16 5 C -0.10 -2.45 7.93 22.27 0.18 -2.27 16 6 C -0.08 -1.87 4.40 -19.87 -0.09 -1.96 16 7 C -0.06 -1.18 2.90 -12.29 -0.04 -1.22 16 8 H 0.13 1.72 7.88 -2.39 -0.02 1.70 16 9 C -0.14 -1.94 8.90 71.98 0.64 -1.30 16 10 C 0.51 14.01 6.99 87.66 0.61 14.62 16 11 O -0.58 -21.48 14.77 -3.03 -0.04 -21.53 16 12 N -0.71 -18.11 4.97 -442.39 -2.20 -20.31 16 13 C 0.16 5.56 2.42 45.02 0.11 5.67 16 14 C -0.12 -4.37 5.65 30.67 0.17 -4.19 16 15 C 0.14 6.37 6.52 86.36 0.56 6.94 16 16 N -0.61 -31.05 2.99 -699.10 -2.09 -33.14 16 17 C -0.26 -14.61 9.58 84.03 0.81 -13.80 16 18 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 19 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 20 N -0.94 -55.47 11.19 21.65 0.24 -55.22 16 21 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C 0.18 8.58 5.30 86.36 0.46 9.04 16 26 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 27 C -0.12 -2.21 9.67 22.27 0.22 -1.99 16 28 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 33 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 34 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.10 2.76 7.52 -2.91 -0.02 2.74 16 36 H 0.08 0.90 7.57 -2.39 -0.02 0.89 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.86 7.39 -2.38 -0.02 0.85 16 39 H 0.41 7.63 8.02 -92.71 -0.74 6.88 16 40 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 41 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 44 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 48 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.14 1.95 7.95 -2.91 -0.02 1.92 16 51 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -71.26 403.85 3.53 -67.73 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.15 Total: 22.17 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 5.44 Total: -6.27 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.05 Total: -108.67 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.04 Total: -21.53 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.26 3.53 -67.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328590.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.701 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds