Wall clock time and date at job start Tue Mar 31 2020 16:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47222 * 2 1 4 4 C 1.38234 * 119.99666 * 269.72872 * 3 2 1 5 5 C 1.38242 * 119.99535 * 179.76784 * 4 3 2 6 6 C 1.38237 * 119.99859 * 0.48331 * 5 4 3 7 7 C 1.50695 * 119.99743 * 179.77313 * 6 5 4 8 8 C 1.53004 * 109.46762 * 270.01707 * 7 6 5 9 9 C 1.50703 * 109.46937 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00200 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99512 * 180.02562 * 11 9 8 13 13 C 1.53040 * 109.45713 * 275.02602 * 12 11 9 14 14 C 1.53198 * 109.30896 * 178.60805 * 13 12 11 15 15 N 1.46924 * 108.76919 * 54.65380 * 14 13 12 16 16 C 1.36931 * 120.63331 * 126.40502 * 15 14 13 17 17 H 1.08002 * 119.99839 * 331.82820 * 16 15 14 18 18 C 1.38808 * 120.00490 * 151.82881 * 16 15 14 19 19 N 1.31628 * 119.99523 * 343.07351 * 18 16 15 20 20 Si 1.86798 * 120.00218 * 163.07608 * 18 16 15 21 21 H 1.48502 * 109.47366 * 89.99983 * 20 18 16 22 22 H 1.48509 * 109.47003 * 209.99628 * 20 18 16 23 23 H 1.48498 * 109.47229 * 329.99863 * 20 18 16 24 24 C 1.46925 * 118.73950 * 306.38908 * 15 14 13 25 25 C 1.53042 * 109.45540 * 154.97672 * 12 11 9 26 26 C 1.38240 * 119.99954 * 359.78976 * 6 5 4 27 27 C 1.38226 * 120.00097 * 359.95688 * 26 6 5 28 28 H 1.08998 * 109.46807 * 299.99949 * 1 2 3 29 29 H 1.09006 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46982 * 60.00007 * 1 2 3 31 31 H 1.09000 * 109.46982 * 119.99993 * 2 1 3 32 32 H 1.08996 * 109.47198 * 239.99684 * 2 1 3 33 33 H 1.07997 * 120.00111 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99704 * 180.25001 * 5 4 3 35 35 H 1.08998 * 109.47802 * 30.01944 * 7 6 5 36 36 H 1.08998 * 109.47319 * 150.02191 * 7 6 5 37 37 H 1.08996 * 109.47438 * 299.99912 * 8 7 6 38 38 H 1.09000 * 109.47158 * 60.00566 * 8 7 6 39 39 H 0.96993 * 119.99755 * 359.97438 * 11 9 8 40 40 H 1.08992 * 109.46301 * 35.00134 * 12 11 9 41 41 H 1.08996 * 109.49895 * 298.56848 * 13 12 11 42 42 H 1.08991 * 109.49923 * 58.66909 * 13 12 11 43 43 H 1.09001 * 109.59236 * 294.86490 * 14 13 12 44 44 H 1.08996 * 109.70024 * 174.51056 * 14 13 12 45 45 H 0.96999 * 119.99720 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.58469 * 293.81611 * 24 15 14 47 47 H 1.08996 * 109.70558 * 173.46512 * 24 15 14 48 48 H 1.09009 * 109.49581 * 301.33085 * 25 12 11 49 49 H 1.08994 * 109.50199 * 61.43001 * 25 12 11 50 50 H 1.08002 * 119.99426 * 179.97438 * 26 6 5 51 51 H 1.08002 * 120.00367 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7244 3.3755 -1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4566 5.4480 0.0000 8 6 4.9866 5.4480 0.0000 9 6 5.4889 6.8689 -0.0007 10 8 4.7008 7.7907 -0.0006 11 7 6.8141 7.1152 -0.0013 12 6 7.3023 8.4965 -0.0014 13 6 7.3523 9.0194 -1.4388 14 6 7.8300 10.4750 -1.4320 15 7 9.1123 10.5483 -0.7185 16 6 10.2060 11.1252 -1.3067 17 1 10.3070 11.1191 -2.3820 18 6 11.1849 11.7179 -0.5211 19 7 10.9256 12.0265 0.7320 20 14 12.8702 12.0775 -1.2420 21 1 12.8743 13.4384 -1.8364 22 1 13.8939 12.0030 -0.1687 23 1 13.1823 11.0770 -2.2941 24 6 9.1987 9.9912 0.6383 25 6 8.7053 8.5412 0.6083 26 6 2.7240 3.3755 1.1972 27 6 2.2628 2.0725 1.1972 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 2.0927 1.5598 -2.1324 34 1 2.9047 3.8844 -2.1325 35 1 3.0933 5.9619 -0.8899 36 1 3.0933 5.9618 0.8900 37 1 5.3500 4.9342 0.8899 38 1 5.3500 4.9343 -0.8900 39 1 7.4443 6.3779 -0.0010 40 1 6.6299 9.1193 0.5885 41 1 8.0436 8.4122 -2.0230 42 1 6.3573 8.9653 -1.8804 43 1 7.0937 11.0990 -0.9254 44 1 7.9613 10.8234 -2.4564 45 1 11.6095 12.4410 1.2809 46 1 8.5740 10.5759 1.3138 47 1 10.2328 10.0184 0.9816 48 1 8.6734 8.1468 1.6240 49 1 9.3838 7.9386 0.0046 50 1 2.9041 3.8847 2.1325 51 1 2.0832 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609330487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:03 Heat of formation + Delta-G solvation = -21.157495 kcal Electronic energy + Delta-G solvation = -27142.180658 eV Core-core repulsion = 23426.524523 eV Total energy + Delta-G solvation = -3715.656135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.05324 -39.48881 -37.38783 -35.39500 -34.38078 -32.78700 -32.04835 -31.17923 -30.19866 -29.62854 -28.76075 -25.63974 -24.59614 -22.99113 -22.94165 -22.24098 -21.72009 -20.66824 -20.07540 -19.21480 -17.24937 -16.71371 -16.16721 -16.13444 -15.74470 -15.28534 -15.22793 -14.77705 -14.18414 -14.09415 -13.88003 -13.70432 -13.59763 -13.54075 -13.41355 -13.20144 -12.92464 -12.58491 -12.46734 -12.38366 -12.06078 -11.75442 -11.69603 -11.45812 -11.26358 -11.13217 -11.06061 -10.99440 -10.85586 -10.70960 -10.49178 -10.27796 -10.03923 -9.86588 -9.68667 -9.45370 -9.17151 -8.74081 -8.68999 -8.45460 -6.68081 -5.79835 -3.21888 1.05839 1.15405 2.81420 3.32961 3.37421 3.44019 3.46272 3.54918 4.38951 4.47562 4.49345 4.60513 4.73987 4.75473 4.87938 4.96148 4.98825 5.10291 5.15644 5.24757 5.25988 5.33902 5.39515 5.48238 5.49694 5.53162 5.56012 5.59941 5.66047 5.72968 5.82222 5.87571 5.88800 6.01939 6.08231 6.17659 6.28221 6.34541 6.35524 6.42815 6.53606 6.56655 6.60332 6.76261 6.80232 6.93694 6.99810 7.31615 7.59790 7.74843 7.80132 8.43086 8.44701 9.20615 9.83911 10.41127 11.29146 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.037858 B = 0.001677 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.436222 B =16688.413185 C =16695.078224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.065 4.065 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.544 6.544 11 N -0.725 5.725 12 C 0.150 3.850 13 C -0.138 4.138 14 C 0.147 3.853 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.174 3.826 25 C -0.146 4.146 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.059 0.941 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.982 -24.169 -0.030 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.103 4.103 8 C -0.175 4.175 9 C 0.294 3.706 10 O -0.421 6.421 11 N -0.375 5.375 12 C 0.047 3.953 13 C -0.178 4.178 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.131 4.131 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.229 0.771 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.426 -23.395 0.087 29.172 hybrid contribution 1.257 -0.177 -0.295 1.304 sum -16.168 -23.572 -0.208 28.585 Atomic orbital electron populations 1.21750 0.94754 1.01646 1.02267 1.20538 0.96177 0.92760 1.02756 1.19887 0.99539 0.96256 0.93278 1.21009 1.00084 0.94903 0.97461 1.21083 0.99545 0.94727 0.97746 1.19943 0.99103 0.96110 0.93179 1.20327 0.93378 0.91979 1.04586 1.21657 0.96793 0.94589 1.04423 1.20633 0.82645 0.91250 0.76077 1.90703 1.55289 1.46474 1.49664 1.46381 1.06666 1.09752 1.74736 1.21033 0.95978 0.80914 0.97409 1.22362 1.00017 0.99730 0.95739 1.20876 0.88461 0.92034 0.96612 1.44078 1.06053 1.66872 1.14512 1.19180 0.97501 1.29989 0.91542 0.91689 1.25051 0.99858 0.98139 0.96595 1.70031 1.32910 1.44256 1.07576 0.86306 0.84218 0.78198 0.78105 1.21375 1.21567 1.20518 1.20733 1.01627 0.86551 0.86305 1.22532 0.94366 1.02744 0.98992 1.21077 0.99542 0.94753 0.97736 1.21004 1.00081 0.94920 0.97459 0.92557 0.92451 0.92549 0.91129 0.91126 0.86269 0.85997 0.90147 0.90161 0.89037 0.89027 0.77123 0.90118 0.92398 0.92794 0.96213 0.92582 0.93613 0.96147 0.89064 0.92799 0.92211 0.86003 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.90 37.16 0.37 -0.42 16 2 C -0.08 -0.49 6.07 -27.88 -0.17 -0.66 16 3 C -0.09 -0.70 5.13 -104.62 -0.54 -1.23 16 4 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 5 C -0.11 -0.98 9.70 -39.58 -0.38 -1.37 16 6 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 7 C -0.06 -0.65 4.63 -27.88 -0.13 -0.78 16 8 C -0.13 -1.30 5.68 -27.88 -0.16 -1.46 16 9 C 0.51 7.07 7.79 -10.98 -0.09 6.98 16 10 O -0.54 -9.80 15.64 5.56 0.09 -9.72 16 11 N -0.73 -9.95 5.08 -53.76 -0.27 -10.22 16 12 C 0.15 2.61 2.42 -67.89 -0.16 2.45 16 13 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 14 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 15 N -0.59 -14.85 2.99 -172.32 -0.52 -15.37 16 16 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 17 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 20 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 25 C -0.15 -2.68 5.55 -26.61 -0.15 -2.82 16 26 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 27 C -0.12 -0.93 9.70 -39.59 -0.38 -1.32 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.08 0.87 8.04 -51.93 -0.42 0.46 16 36 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.31 8.60 -40.82 -0.35 3.96 16 40 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 48 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -31.66 409.31 -11.50 -43.16 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -9.04 Total: 2.10 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.52 Total: -7.16 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.17 Total: -51.04 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.66 -11.50 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609330487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.005 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds