Wall clock time and date at job start Tue Mar 31 2020 16:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47092 * 2 1 4 4 C 1.38230 * 120.00023 * 89.99651 * 3 2 1 5 5 C 1.38237 * 120.00157 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99620 * 359.96334 * 5 4 3 7 7 C 1.50709 * 119.99555 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47070 * 20.00032 * 7 6 5 9 9 C 1.52992 * 109.46910 * 259.99877 * 7 6 5 10 10 N 1.46502 * 109.46819 * 139.99978 * 7 6 5 11 11 C 1.34769 * 119.99819 * 204.99884 * 10 7 6 12 12 O 1.21587 * 120.00262 * 4.70833 * 11 10 7 13 13 N 1.34781 * 119.99828 * 184.98114 * 11 10 7 14 14 C 1.46928 * 120.62970 * 354.20569 * 13 11 10 15 15 C 1.52764 * 109.00746 * 233.58136 * 14 13 11 16 16 C 1.53036 * 109.38373 * 305.58924 * 15 14 13 17 17 C 1.50698 * 109.44885 * 181.24980 * 16 15 14 18 18 H 1.07996 * 120.00672 * 239.94017 * 17 16 15 19 19 C 1.37884 * 119.99617 * 59.94277 * 17 16 15 20 20 N 1.31507 * 120.00204 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99845 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47173 * 59.99610 * 21 19 17 23 23 H 1.48499 * 109.46929 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46819 * 299.99531 * 21 19 17 25 25 C 1.53046 * 109.53920 * 61.24068 * 16 15 14 26 26 C 1.46923 * 120.63202 * 174.48361 * 13 11 10 27 27 C 1.38230 * 120.00150 * 0.27080 * 6 5 4 28 28 C 1.38231 * 119.99883 * 359.51864 * 27 6 5 29 29 H 1.09002 * 109.46999 * 59.99799 * 1 2 3 30 30 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46879 * 299.99930 * 1 2 3 32 32 H 1.09000 * 109.46879 * 240.00070 * 2 1 3 33 33 H 1.08994 * 109.46802 * 119.99994 * 2 1 3 34 34 H 1.07999 * 119.99949 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00287 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47381 * 299.99965 * 9 7 6 37 37 H 1.09006 * 109.47144 * 60.00684 * 9 7 6 38 38 H 1.09004 * 109.47082 * 180.02562 * 9 7 6 39 39 H 0.97004 * 120.00012 * 24.99769 * 10 7 6 40 40 H 1.08996 * 109.58551 * 353.41434 * 14 13 11 41 41 H 1.08994 * 109.58773 * 113.84365 * 14 13 11 42 42 H 1.08993 * 109.56171 * 185.55159 * 15 14 13 43 43 H 1.09005 * 109.38158 * 65.51511 * 15 14 13 44 44 H 1.09000 * 109.45951 * 301.22144 * 16 15 14 45 45 H 0.97003 * 120.00298 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.49643 * 178.68581 * 25 16 15 47 47 H 1.08995 * 109.52572 * 58.60092 * 25 16 15 48 48 H 1.08996 * 109.58989 * 246.15711 * 26 13 11 49 49 H 1.09001 * 109.58433 * 6.44239 * 26 13 11 50 50 H 1.08001 * 120.00134 * 179.72750 * 27 6 5 51 51 H 1.08000 * 120.00075 * 180.24954 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9557 4.0268 -0.0001 7 6 3.4580 5.4477 0.0000 8 1 3.9095 5.6734 0.9661 9 6 2.2890 6.4018 -0.2521 10 7 4.4590 5.6117 -1.0571 11 6 5.3938 6.5772 -0.9559 12 8 5.4602 7.2561 0.0506 13 7 6.2515 6.7939 -1.9728 14 6 6.2640 5.9064 -3.1436 15 6 7.6868 5.3965 -3.3662 16 6 8.6427 6.5871 -3.4693 17 6 10.0420 6.0869 -3.7195 18 1 10.8304 6.3137 -3.0171 19 6 10.3159 5.3396 -4.8454 20 7 9.3560 5.0630 -5.7006 21 14 12.0504 4.7189 -5.1553 22 1 12.4707 3.8429 -4.0322 23 1 12.0804 3.9463 -6.4232 24 1 12.9786 5.8736 -5.2566 25 6 8.6119 7.3829 -2.1624 26 6 7.1958 7.9186 -1.9287 27 6 2.7207 3.3767 -1.1972 28 6 2.2636 2.0722 -1.1971 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0823 1.5635 2.1324 35 1 2.9035 3.8849 2.1324 36 1 1.8376 6.1761 -1.2182 37 1 1.5442 6.2798 0.5344 38 1 2.6524 7.4295 -0.2526 39 1 4.4490 5.0253 -1.8298 40 1 5.5978 5.0616 -2.9689 41 1 5.9348 6.4582 -4.0240 42 1 7.7266 4.8170 -4.2884 43 1 7.9804 4.7657 -2.5271 44 1 8.3341 7.2303 -4.2934 45 1 9.5487 4.5375 -6.4930 46 1 9.3103 8.2172 -2.2279 47 1 8.8967 6.7343 -1.3341 48 1 6.9441 8.6379 -2.7080 49 1 7.1424 8.4027 -0.9536 50 1 2.8975 3.8870 -2.1325 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611619352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:22 Heat of formation + Delta-G solvation = -21.636905 kcal Electronic energy + Delta-G solvation = -28395.307544 eV Core-core repulsion = 24679.630621 eV Total energy + Delta-G solvation = -3715.676924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.35306 -39.46670 -37.14782 -35.83575 -33.77833 -33.45056 -31.65182 -31.12042 -30.33843 -29.84597 -28.61926 -26.12990 -24.63929 -23.25978 -22.98661 -22.44303 -21.92435 -20.60490 -19.90598 -18.97950 -17.81136 -16.58137 -16.26826 -15.97957 -15.48629 -15.25560 -14.99628 -14.59486 -14.27184 -14.05849 -13.98936 -13.77534 -13.45655 -13.41928 -13.26269 -13.03645 -12.69988 -12.64634 -12.55376 -12.26079 -12.19078 -11.77872 -11.59682 -11.56994 -11.36556 -11.25972 -11.03295 -10.92376 -10.84100 -10.65752 -10.36665 -10.14576 -9.73401 -9.53789 -9.14556 -9.08826 -8.99062 -8.92813 -8.68854 -8.37141 -7.88220 -6.03022 -4.08818 1.11789 1.23906 3.03247 3.29937 3.34387 3.37779 3.54699 3.61770 4.26566 4.41101 4.41700 4.56643 4.61860 4.82882 4.87666 5.05475 5.21360 5.23843 5.25075 5.26767 5.32726 5.38435 5.52318 5.58591 5.63320 5.65773 5.75990 5.80467 5.83705 5.91082 5.92932 5.97280 6.08299 6.12896 6.19684 6.24736 6.30865 6.39251 6.43038 6.49337 6.69823 6.75347 6.81601 6.89665 7.01500 7.16461 7.23862 7.47723 7.67370 7.93127 8.03669 8.33602 8.41212 8.94313 8.97458 9.56083 11.02434 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002783 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.591685 B =10057.465443 C =11664.108198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.091 4.091 7 C 0.201 3.799 8 H 0.095 0.905 9 C -0.156 4.156 10 N -0.746 5.746 11 C 0.708 3.292 12 O -0.605 6.605 13 N -0.618 5.618 14 C 0.111 3.889 15 C -0.124 4.124 16 C 0.050 3.950 17 C -0.511 4.511 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.124 4.124 26 C 0.130 3.870 27 C -0.109 4.109 28 C -0.113 4.113 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.395 0.605 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.038 0.962 44 H 0.027 0.973 45 H 0.260 0.740 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.079 0.921 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.799 -6.620 9.229 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.092 4.092 7 C 0.095 3.905 8 H 0.113 0.887 9 C -0.215 4.215 10 N -0.404 5.404 11 C 0.409 3.591 12 O -0.485 6.485 13 N -0.355 5.355 14 C -0.011 4.011 15 C -0.163 4.163 16 C 0.031 3.969 17 C -0.549 4.549 18 H 0.072 0.928 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.163 4.163 26 C 0.007 3.993 27 C -0.127 4.127 28 C -0.131 4.131 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.774 -6.196 9.762 22.048 hybrid contribution 1.006 -0.784 -0.727 1.468 sum -17.768 -6.979 9.035 21.119 Atomic orbital electron populations 1.21746 0.94741 1.01645 1.02219 1.20550 0.96139 0.92708 1.02926 1.19908 0.99112 0.96232 0.93236 1.20983 1.00092 0.94729 0.97540 1.20985 0.99221 0.94669 0.97442 1.19976 0.99977 0.95522 0.93689 1.19553 0.88115 0.90268 0.92555 0.88690 1.22177 0.97451 1.00002 1.01851 1.45443 1.32370 1.37124 1.25512 1.15822 0.79244 0.80692 0.83306 1.90840 1.75476 1.51913 1.30236 1.47415 1.37248 1.31538 1.19253 1.21790 1.00566 0.91822 0.86943 1.21941 0.90729 1.00811 1.02780 1.18611 0.94748 0.92249 0.91251 1.21184 0.94334 1.32783 1.06634 0.92750 1.24956 0.96921 0.96099 0.95987 1.69820 1.31683 1.39521 1.12148 0.86680 0.85102 0.78952 0.77400 1.20362 1.21330 1.20295 1.22020 0.93446 1.00029 1.00759 1.21567 0.89114 0.86999 1.01635 1.20928 0.99293 0.94927 0.97558 1.21004 0.99789 0.94675 0.97643 0.92525 0.92453 0.92596 0.90969 0.91068 0.86088 0.85787 0.92483 0.91771 0.91586 0.76672 0.92730 0.92037 0.87808 0.94338 0.95466 0.92963 0.92167 0.92978 0.92491 0.90262 0.86126 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 37.16 0.37 -0.55 16 2 C -0.09 -0.62 6.06 -27.88 -0.17 -0.78 16 3 C -0.08 -0.78 5.13 -104.63 -0.54 -1.32 16 4 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 5 C -0.10 -1.07 9.67 -39.58 -0.38 -1.46 16 6 C -0.09 -1.02 4.95 -104.62 -0.52 -1.54 16 7 C 0.20 2.54 2.81 -69.08 -0.19 2.35 16 8 H 0.10 1.34 7.37 -51.93 -0.38 0.96 16 9 C -0.16 -1.76 9.46 37.15 0.35 -1.41 16 10 N -0.75 -10.90 4.93 -59.81 -0.30 -11.19 16 11 C 0.71 12.96 8.26 -86.92 -0.72 12.24 16 12 O -0.60 -12.71 15.39 5.29 0.08 -12.63 16 13 N -0.62 -11.44 2.98 -178.77 -0.53 -11.97 16 14 C 0.11 2.00 6.36 -3.93 -0.02 1.97 16 15 C -0.12 -2.74 5.14 -26.83 -0.14 -2.88 16 16 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 17 C -0.51 -13.67 8.56 -34.44 -0.29 -13.97 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -24.39 11.30 55.43 0.63 -23.77 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 26 C 0.13 2.43 6.44 -3.71 -0.02 2.41 16 27 C -0.11 -1.15 9.05 -39.59 -0.36 -1.51 16 28 C -0.11 -1.10 9.70 -39.58 -0.38 -1.49 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 5.25 4.38 -40.82 -0.18 5.07 16 40 H 0.05 0.84 5.66 -51.93 -0.29 0.54 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.10 2.54 6.03 -51.93 -0.31 2.22 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 50 H 0.12 1.17 6.93 -52.49 -0.36 0.81 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -29.99 400.79 -11.55 -41.54 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.62 Total: 5.66 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.83 Total: -9.58 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.20 Total: -46.93 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.99 -11.55 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611619352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.908 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds