Wall clock time and date at job start Tue Mar 31 2020 16:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47092 * 2 1 4 4 C 1.38230 * 120.00023 * 89.99651 * 3 2 1 5 5 C 1.38237 * 120.00157 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99620 * 359.96334 * 5 4 3 7 7 C 1.50709 * 119.99555 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47070 * 20.00032 * 7 6 5 9 9 C 1.52992 * 109.46910 * 259.99877 * 7 6 5 10 10 N 1.46502 * 109.46819 * 139.99978 * 7 6 5 11 11 C 1.34769 * 119.99819 * 204.99884 * 10 7 6 12 12 O 1.21587 * 120.00262 * 4.70833 * 11 10 7 13 13 N 1.34781 * 119.99828 * 184.98114 * 11 10 7 14 14 C 1.46928 * 120.62970 * 354.20569 * 13 11 10 15 15 C 1.52764 * 109.00746 * 233.58136 * 14 13 11 16 16 C 1.53036 * 109.38373 * 305.58924 * 15 14 13 17 17 C 1.50698 * 109.44885 * 181.24980 * 16 15 14 18 18 H 1.07996 * 120.00672 * 239.94017 * 17 16 15 19 19 C 1.37884 * 119.99617 * 59.94277 * 17 16 15 20 20 N 1.31507 * 120.00204 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99845 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47173 * 59.99610 * 21 19 17 23 23 H 1.48499 * 109.46929 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46819 * 299.99531 * 21 19 17 25 25 C 1.53046 * 109.53920 * 61.24068 * 16 15 14 26 26 C 1.46923 * 120.63202 * 174.48361 * 13 11 10 27 27 C 1.38230 * 120.00150 * 0.27080 * 6 5 4 28 28 C 1.38231 * 119.99883 * 359.51864 * 27 6 5 29 29 H 1.09002 * 109.46999 * 59.99799 * 1 2 3 30 30 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46879 * 299.99930 * 1 2 3 32 32 H 1.09000 * 109.46879 * 240.00070 * 2 1 3 33 33 H 1.08994 * 109.46802 * 119.99994 * 2 1 3 34 34 H 1.07999 * 119.99949 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00287 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47381 * 299.99965 * 9 7 6 37 37 H 1.09006 * 109.47144 * 60.00684 * 9 7 6 38 38 H 1.09004 * 109.47082 * 180.02562 * 9 7 6 39 39 H 0.97004 * 120.00012 * 24.99769 * 10 7 6 40 40 H 1.08996 * 109.58551 * 353.41434 * 14 13 11 41 41 H 1.08994 * 109.58773 * 113.84365 * 14 13 11 42 42 H 1.08993 * 109.56171 * 185.55159 * 15 14 13 43 43 H 1.09005 * 109.38158 * 65.51511 * 15 14 13 44 44 H 1.09000 * 109.45951 * 301.22144 * 16 15 14 45 45 H 0.97003 * 120.00298 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.49643 * 178.68581 * 25 16 15 47 47 H 1.08995 * 109.52572 * 58.60092 * 25 16 15 48 48 H 1.08996 * 109.58989 * 246.15711 * 26 13 11 49 49 H 1.09001 * 109.58433 * 6.44239 * 26 13 11 50 50 H 1.08001 * 120.00134 * 179.72750 * 27 6 5 51 51 H 1.08000 * 120.00075 * 180.24954 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9557 4.0268 -0.0001 7 6 3.4580 5.4477 0.0000 8 1 3.9095 5.6734 0.9661 9 6 2.2890 6.4018 -0.2521 10 7 4.4590 5.6117 -1.0571 11 6 5.3938 6.5772 -0.9559 12 8 5.4602 7.2561 0.0506 13 7 6.2515 6.7939 -1.9728 14 6 6.2640 5.9064 -3.1436 15 6 7.6868 5.3965 -3.3662 16 6 8.6427 6.5871 -3.4693 17 6 10.0420 6.0869 -3.7195 18 1 10.8304 6.3137 -3.0171 19 6 10.3159 5.3396 -4.8454 20 7 9.3560 5.0630 -5.7006 21 14 12.0504 4.7189 -5.1553 22 1 12.4707 3.8429 -4.0322 23 1 12.0804 3.9463 -6.4232 24 1 12.9786 5.8736 -5.2566 25 6 8.6119 7.3829 -2.1624 26 6 7.1958 7.9186 -1.9287 27 6 2.7207 3.3767 -1.1972 28 6 2.2636 2.0722 -1.1971 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0823 1.5635 2.1324 35 1 2.9035 3.8849 2.1324 36 1 1.8376 6.1761 -1.2182 37 1 1.5442 6.2798 0.5344 38 1 2.6524 7.4295 -0.2526 39 1 4.4490 5.0253 -1.8298 40 1 5.5978 5.0616 -2.9689 41 1 5.9348 6.4582 -4.0240 42 1 7.7266 4.8170 -4.2884 43 1 7.9804 4.7657 -2.5271 44 1 8.3341 7.2303 -4.2934 45 1 9.5487 4.5375 -6.4930 46 1 9.3103 8.2172 -2.2279 47 1 8.8967 6.7343 -1.3341 48 1 6.9441 8.6379 -2.7080 49 1 7.1424 8.4027 -0.9536 50 1 2.8975 3.8870 -2.1325 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611619352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:20 Heat of formation + Delta-G solvation = -35.256415 kcal Electronic energy + Delta-G solvation = -28395.898131 eV Core-core repulsion = 24679.630621 eV Total energy + Delta-G solvation = -3716.267510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59644 -40.45169 -38.65078 -36.95861 -35.35561 -34.57175 -33.18182 -31.95794 -31.81049 -31.19934 -29.39391 -27.94454 -25.50978 -24.74164 -23.98683 -23.78789 -22.99963 -21.73293 -21.10536 -20.45553 -19.26799 -18.31239 -17.62635 -17.00015 -16.55066 -16.51090 -16.29927 -16.01208 -15.38487 -15.21099 -14.91073 -14.88470 -14.64557 -14.52572 -14.46871 -14.18763 -14.12984 -14.09231 -13.58892 -13.34799 -13.30168 -13.13251 -12.95476 -12.79640 -12.51383 -12.46469 -12.28919 -12.14465 -12.06200 -11.96963 -11.67124 -11.61296 -11.47871 -11.23079 -10.99415 -10.78894 -10.39465 -10.25634 -9.83142 -9.48500 -9.39489 -8.07446 -6.20246 0.34523 0.49168 1.42631 1.43138 1.50466 1.71577 2.13605 2.44391 2.78564 2.96034 3.18930 3.57479 3.88035 3.94776 4.07613 4.11501 4.19580 4.22748 4.32329 4.35547 4.40954 4.46059 4.52519 4.57602 4.58546 4.65830 4.68989 4.72350 4.76543 4.88696 4.89507 4.99338 5.05514 5.09163 5.12099 5.19338 5.20849 5.23198 5.24334 5.40157 5.43005 5.44234 5.48222 5.52728 5.65582 5.72903 5.73252 5.98756 6.04589 6.09557 6.13095 6.40230 6.88448 6.95676 7.47026 7.55153 8.95744 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002783 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.591685 B =10057.465443 C =11664.108198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.104 4.104 7 C 0.201 3.799 8 H 0.077 0.923 9 C -0.149 4.149 10 N -0.733 5.733 11 C 0.705 3.295 12 O -0.633 6.633 13 N -0.622 5.622 14 C 0.122 3.878 15 C -0.114 4.114 16 C 0.047 3.953 17 C -0.536 4.536 18 H 0.046 0.954 19 C 0.019 3.981 20 N -0.910 5.910 21 Si 0.947 3.053 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.274 1.274 25 C -0.114 4.114 26 C 0.135 3.865 27 C -0.118 4.118 28 C -0.122 4.122 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.403 0.597 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.022 0.978 44 H 0.006 0.994 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.127 0.873 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.026 -7.855 9.407 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.138 4.138 5 C -0.132 4.132 6 C -0.105 4.105 7 C 0.097 3.903 8 H 0.095 0.905 9 C -0.207 4.207 10 N -0.392 5.392 11 C 0.407 3.593 12 O -0.516 6.516 13 N -0.358 5.358 14 C 0.000 4.000 15 C -0.153 4.153 16 C 0.028 3.972 17 C -0.574 4.574 18 H 0.064 0.936 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.774 3.226 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.199 1.199 25 C -0.152 4.152 26 C 0.012 3.988 27 C -0.136 4.136 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.242 0.758 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.041 0.959 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.145 0.855 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.025 -7.450 9.937 23.564 hybrid contribution 1.374 -0.446 -0.757 1.631 sum -18.651 -7.896 9.179 22.237 Atomic orbital electron populations 1.21727 0.94031 1.02377 1.01971 1.20599 0.96671 0.91438 1.03572 1.20225 0.98247 0.97204 0.93049 1.21244 0.99583 0.94429 0.98542 1.21175 0.99256 0.95236 0.97534 1.19869 1.01316 0.94764 0.94501 1.19620 0.87841 0.91863 0.91012 0.90468 1.22102 0.97199 0.98327 1.03072 1.45418 1.31692 1.35900 1.26142 1.15954 0.79609 0.81084 0.82687 1.90818 1.76323 1.53192 1.31247 1.47412 1.37423 1.31509 1.19485 1.21652 0.98346 0.92800 0.87213 1.21704 0.93070 0.99618 1.00884 1.18587 0.93935 0.92805 0.91840 1.21520 0.95635 1.33356 1.06864 0.93576 1.25617 1.00279 0.96285 0.95871 1.69925 1.33051 1.39711 1.12301 0.85782 0.81126 0.78431 0.77305 1.20228 1.20721 1.19942 1.21870 0.95255 0.99556 0.98561 1.21468 0.87830 0.87321 1.02153 1.21058 0.99539 0.95454 0.97540 1.21243 0.99615 0.94499 0.98608 0.92908 0.91263 0.92713 0.90524 0.90270 0.84218 0.84978 0.91538 0.90012 0.93494 0.75801 0.89789 0.91229 0.90031 0.95914 0.97555 0.92897 0.91636 0.94391 0.91068 0.90177 0.85533 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.90 71.98 0.71 -0.78 16 2 C -0.09 -1.03 6.06 29.85 0.18 -0.85 16 3 C -0.09 -1.44 5.13 -19.87 -0.10 -1.54 16 4 C -0.12 -2.02 9.70 22.27 0.22 -1.80 16 5 C -0.11 -2.18 9.67 22.27 0.22 -1.97 16 6 C -0.10 -2.21 4.95 -19.86 -0.10 -2.31 16 7 C 0.20 4.94 2.81 44.24 0.12 5.07 16 8 H 0.08 2.18 7.37 -2.39 -0.02 2.17 16 9 C -0.15 -3.18 9.46 71.98 0.68 -2.50 16 10 N -0.73 -20.68 4.93 -461.42 -2.28 -22.96 16 11 C 0.70 25.35 8.26 179.06 1.48 26.83 16 12 O -0.63 -26.54 15.39 -3.99 -0.06 -26.61 16 13 N -0.62 -22.56 2.98 -837.75 -2.50 -25.06 16 14 C 0.12 4.27 6.36 86.22 0.55 4.82 16 15 C -0.11 -5.08 5.14 30.53 0.16 -4.92 16 16 C 0.05 2.27 2.07 -11.51 -0.02 2.25 16 17 C -0.54 -29.08 8.56 25.60 0.22 -28.86 16 18 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 19 C 0.02 1.00 5.30 84.66 0.45 1.45 16 20 N -0.91 -50.04 11.30 21.45 0.24 -49.80 16 21 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 C -0.11 -4.79 5.30 30.67 0.16 -4.63 16 26 C 0.14 5.02 6.44 86.36 0.56 5.57 16 27 C -0.12 -2.30 9.05 22.27 0.20 -2.10 16 28 C -0.12 -2.15 9.70 22.27 0.22 -1.93 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 33 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.13 2.22 8.04 -2.91 -0.02 2.19 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.40 10.03 4.38 -92.71 -0.41 9.63 16 40 H 0.08 2.42 5.66 -2.39 -0.01 2.41 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 4.03 6.03 -2.39 -0.01 4.02 16 43 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 46 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.08 2.98 6.99 -2.39 -0.02 2.97 16 50 H 0.13 2.23 6.93 -2.91 -0.02 2.21 16 51 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -64.16 400.79 3.83 -60.34 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.50 Total: 27.31 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.89 Total: -8.20 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -4.53 Total: -97.81 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.06 Total: -26.61 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.16 3.83 -60.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611619352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.079 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds