Wall clock time and date at job start Tue Mar 31 2020 15:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50699 * 120.00135 * 2 1 4 4 N 1.46491 * 109.47713 * 124.99348 * 3 2 1 5 5 C 1.36491 * 124.78106 * 270.00358 * 4 3 2 6 6 C 1.50701 * 125.41420 * 359.97438 * 5 4 3 7 7 C 1.34352 * 109.16640 * 179.74588 * 5 4 3 8 8 C 1.46899 * 106.35479 * 0.37757 * 7 5 4 9 9 C 1.46456 * 127.05925 * 179.88801 * 8 7 5 10 10 O 1.21347 * 119.99784 * 179.68200 * 9 8 7 11 11 C 1.50694 * 120.00550 * 359.68416 * 9 8 7 12 12 N 1.46892 * 109.47634 * 179.97438 * 11 9 8 13 13 C 1.46851 * 111.00061 * 66.04553 * 12 11 9 14 14 C 1.53035 * 109.52351 * 185.84117 * 13 12 11 15 15 C 1.53114 * 109.28054 * 300.82182 * 14 13 12 16 16 C 1.53119 * 109.16060 * 57.65437 * 15 14 13 17 17 H 1.09001 * 109.50224 * 62.33025 * 16 15 14 18 18 C 1.50706 * 109.50101 * 182.40515 * 16 15 14 19 19 H 1.07999 * 119.99515 * 120.00663 * 18 16 15 20 20 C 1.37870 * 120.00176 * 300.00129 * 18 16 15 21 21 N 1.31520 * 119.99883 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00043 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47288 * 59.99994 * 22 20 18 24 24 H 1.48503 * 109.47086 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46819 * 299.99648 * 22 20 18 26 26 C 1.46842 * 111.00485 * 190.25695 * 12 11 9 27 27 C 1.34496 * 124.77719 * 89.99739 * 4 3 2 28 28 C 1.50702 * 125.91890 * 0.02562 * 27 4 3 29 29 H 1.08001 * 120.00494 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00100 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00494 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46960 * 4.99219 * 3 2 1 33 33 H 1.09003 * 109.47288 * 245.00188 * 3 2 1 34 34 H 1.09002 * 109.46661 * 90.00616 * 6 5 4 35 35 H 1.09003 * 109.46852 * 209.99770 * 6 5 4 36 36 H 1.09000 * 109.47501 * 330.00245 * 6 5 4 37 37 H 1.08000 * 126.82194 * 180.25274 * 7 5 4 38 38 H 1.09000 * 109.46704 * 59.99693 * 11 9 8 39 39 H 1.08998 * 109.47077 * 300.00126 * 11 9 8 40 40 H 1.09002 * 109.45716 * 65.82468 * 13 12 11 41 41 H 1.08998 * 109.46048 * 305.86219 * 13 12 11 42 42 H 1.09005 * 109.50046 * 180.88323 * 14 13 12 43 43 H 1.08997 * 109.53619 * 60.78727 * 14 13 12 44 44 H 1.09007 * 109.52422 * 297.75149 * 15 14 13 45 45 H 1.09003 * 109.57878 * 177.59661 * 15 14 13 46 46 H 0.97004 * 119.99507 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.45960 * 54.14537 * 26 12 11 48 48 H 1.08996 * 109.46282 * 294.17945 * 26 12 11 49 49 H 1.09005 * 109.46504 * 270.02049 * 28 27 4 50 50 H 1.08999 * 109.47335 * 30.01877 * 28 27 4 51 51 H 1.09001 * 109.47400 * 150.02062 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.6926 1.8055 2.3757 6 6 1.3626 2.3773 2.7943 7 6 3.7690 1.6761 3.1692 8 6 4.8249 1.0799 2.3400 9 6 6.1893 0.7456 2.7541 10 8 6.9599 0.2484 1.9595 11 6 6.6363 1.0190 4.1670 12 7 8.0340 0.5972 4.3288 13 6 8.9313 1.4247 3.5123 14 6 10.3544 0.8674 3.5916 15 6 10.8168 0.8675 5.0512 16 6 9.8386 0.0387 5.8883 17 1 9.8447 -0.9937 5.5390 18 6 10.2535 0.0823 7.3365 19 1 9.5790 0.4814 8.0796 20 6 11.4939 -0.3873 7.7127 21 7 12.3154 -0.8729 6.8076 22 14 12.0079 -0.3339 9.5078 23 1 11.0588 -1.1382 10.3186 24 1 13.3760 -0.8942 9.6479 25 1 11.9973 1.0727 9.9840 26 6 8.4305 0.6201 5.7425 27 6 4.2644 0.8936 1.0904 28 6 4.9573 0.3023 -0.1102 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0894 33 1 2.6212 1.4026 -0.9314 34 1 0.7274 1.5779 3.1759 35 1 1.5170 3.1225 3.5747 36 1 0.8815 2.8451 1.9353 37 1 3.8438 1.9567 4.2094 38 1 6.0066 0.4626 4.8613 39 1 6.5519 2.0856 4.3748 40 1 8.9209 2.4487 3.8856 41 1 8.5937 1.4126 2.4760 42 1 11.0230 1.4910 2.9980 43 1 10.3688 -0.1518 3.2053 44 1 10.8405 1.8909 5.4258 45 1 11.8137 0.4319 5.1186 46 1 13.1880 -1.2037 7.0724 47 1 7.7291 0.0236 6.3260 48 1 8.4225 1.6478 6.1054 49 1 4.8096 -0.7777 -0.1194 50 1 4.5398 0.7339 -1.0198 51 1 6.0236 0.5228 -0.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000661149366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:22 Heat of formation + Delta-G solvation = 26.269632 kcal Electronic energy + Delta-G solvation = -28267.541836 eV Core-core repulsion = 24553.942295 eV Total energy + Delta-G solvation = -3713.599540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.61539 -39.05324 -37.28185 -35.55114 -33.54947 -32.87392 -31.90340 -31.42654 -29.71674 -29.40133 -27.88806 -25.92475 -24.83440 -24.76967 -22.44041 -21.50469 -21.17691 -20.69699 -19.45413 -18.52712 -18.15060 -16.70164 -16.26892 -16.07863 -15.35874 -15.34008 -14.91652 -14.67935 -14.37673 -14.25035 -13.80143 -13.66286 -13.49051 -13.31738 -13.23737 -12.93608 -12.75902 -12.65236 -12.53207 -12.42632 -12.32154 -12.24806 -11.97295 -11.66143 -11.48980 -11.45406 -11.09603 -10.86198 -10.63393 -10.53502 -10.15925 -9.93915 -9.71641 -9.49938 -9.24287 -8.75623 -8.70352 -8.58035 -8.19231 -8.06515 -7.48546 -5.87760 -3.94069 1.44099 1.58278 2.20441 2.69540 3.38096 3.41671 3.42564 3.44834 4.13487 4.24943 4.32398 4.48685 4.54746 4.61777 4.66542 4.84338 4.90227 4.94505 5.07314 5.23655 5.28743 5.41684 5.43858 5.49982 5.53385 5.66900 5.70491 5.80218 5.81282 5.87918 5.94421 5.98411 6.02342 6.04790 6.24845 6.29390 6.45374 6.53271 6.66325 6.73116 6.89492 6.93793 6.98080 7.07362 7.10828 7.37978 7.52673 7.82436 7.84825 7.91604 8.15698 8.21219 8.30221 8.58743 9.09983 9.69419 11.18007 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.002265 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.744742 B =12360.157435 C =12968.896673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.125 3.875 4 N -0.433 5.433 5 C 0.003 3.997 6 C -0.081 4.081 7 C -0.150 4.150 8 C -0.256 4.256 9 C 0.425 3.575 10 O -0.451 6.451 11 C 0.018 3.982 12 N -0.526 5.526 13 C 0.060 3.940 14 C -0.114 4.114 15 C -0.110 4.110 16 C 0.055 3.945 17 H 0.035 0.965 18 C -0.513 4.513 19 H 0.052 0.948 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.068 3.932 27 C 0.102 3.898 28 C -0.093 4.093 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.147 0.853 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.090 0.910 46 H 0.259 0.741 47 H 0.058 0.942 48 H 0.018 0.982 49 H 0.077 0.923 50 H 0.060 0.940 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.867 6.389 -15.260 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.004 3.996 4 N -0.110 5.110 5 C -0.103 4.103 6 C -0.139 4.139 7 C -0.174 4.174 8 C -0.264 4.264 9 C 0.303 3.697 10 O -0.326 6.326 11 C -0.111 4.111 12 N -0.251 5.251 13 C -0.067 4.067 14 C -0.152 4.152 15 C -0.148 4.148 16 C 0.036 3.964 17 H 0.053 0.947 18 C -0.552 4.552 19 H 0.071 0.929 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.204 1.204 26 C -0.059 4.059 27 C -0.014 4.014 28 C -0.150 4.150 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.037 0.963 49 H 0.096 0.904 50 H 0.079 0.921 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.465 5.589 -16.093 29.812 hybrid contribution 0.022 0.904 1.416 1.680 sum -24.443 6.493 -14.677 29.241 Atomic orbital electron populations 1.23937 0.95532 1.02511 0.98292 1.23151 0.96357 0.98297 1.01783 1.20972 0.92472 0.97051 0.89150 1.43526 1.09738 1.47965 1.09727 1.20134 0.98082 1.07421 0.84702 1.20306 0.91550 1.00546 1.01469 1.21850 0.91670 1.04887 0.98988 1.21122 0.96843 1.14572 0.93856 1.21443 0.84713 0.74171 0.89400 1.90460 1.54728 1.33224 1.54236 1.22270 0.93034 0.99849 0.95988 1.61821 0.99369 1.53501 1.10389 1.22143 0.94206 0.93017 0.97383 1.21624 0.93544 1.00442 0.99578 1.21653 1.03394 0.98690 0.91102 1.18654 0.87482 0.95616 0.94616 0.94728 1.21118 1.00542 1.40824 0.92750 0.92930 1.24941 0.96652 0.95252 0.97078 1.69899 1.08533 1.41587 1.32641 0.86695 0.77563 0.78187 0.85717 1.20354 1.21383 1.20436 1.22338 1.00334 0.98333 0.84877 1.20840 0.83960 0.99672 0.96956 1.20567 1.02055 1.00524 0.91891 0.88215 0.87663 0.86559 0.88715 0.88300 0.91155 0.90110 0.92191 0.83556 0.88224 0.92620 0.96638 0.91018 0.93791 0.92017 0.95333 0.89194 0.93074 0.92314 0.96340 0.90408 0.92068 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 14.32 29.02 0.42 -0.33 16 2 C -0.18 -1.04 9.85 -36.02 -0.35 -1.40 16 3 C 0.12 0.76 6.00 -5.20 -0.03 0.73 16 4 N -0.43 -4.13 2.66 -108.89 -0.29 -4.42 16 5 C 0.00 0.03 6.84 -81.89 -0.56 -0.53 16 6 C -0.08 -0.52 10.05 36.01 0.36 -0.16 16 7 C -0.15 -1.75 10.58 -37.45 -0.40 -2.15 16 8 C -0.26 -3.54 6.29 -103.09 -0.65 -4.19 16 9 C 0.42 6.96 6.80 -31.00 -0.21 6.75 16 10 O -0.45 -8.49 12.88 5.50 0.07 -8.41 16 11 C 0.02 0.29 5.01 -4.98 -0.02 0.27 16 12 N -0.53 -10.82 4.39 -236.13 -1.04 -11.86 16 13 C 0.06 1.22 5.11 -3.83 -0.02 1.20 16 14 C -0.11 -2.49 6.09 -26.65 -0.16 -2.65 16 15 C -0.11 -2.78 5.02 -26.61 -0.13 -2.91 16 16 C 0.06 1.45 2.27 -91.69 -0.21 1.24 16 17 H 0.03 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.51 -14.50 8.56 -34.44 -0.29 -14.79 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -26.11 11.35 55.43 0.63 -25.49 16 22 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.07 1.52 4.68 -3.84 -0.02 1.50 16 27 C 0.10 1.21 6.94 -81.43 -0.56 0.65 16 28 C -0.09 -0.95 9.54 36.01 0.34 -0.61 16 29 H 0.10 0.32 7.84 -52.49 -0.41 -0.09 16 30 H 0.11 0.41 8.06 -52.49 -0.42 -0.01 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.09 0.42 6.53 -51.93 -0.34 0.08 16 33 H 0.10 0.49 6.88 -51.93 -0.36 0.14 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.30 6.92 -51.93 -0.36 -0.06 16 37 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.10 1.53 7.98 -51.93 -0.41 1.11 16 39 H 0.06 0.86 8.12 -51.93 -0.42 0.43 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 1.41 5.80 -51.93 -0.30 1.11 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.09 2.50 6.15 -51.93 -0.32 2.18 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 51 H 0.10 1.23 6.52 -51.93 -0.34 0.89 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -32.77 402.56 -10.84 -43.60 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.65 Total: -0.50 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.60 Total: -15.71 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.70 Total: -41.77 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.77 -10.84 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661149366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.875 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds