Wall clock time and date at job start Tue Mar 31 2020 15:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50699 * 120.00135 * 2 1 4 4 N 1.46491 * 109.47713 * 124.99348 * 3 2 1 5 5 C 1.36491 * 124.78106 * 270.00358 * 4 3 2 6 6 C 1.50701 * 125.41420 * 359.97438 * 5 4 3 7 7 C 1.34352 * 109.16640 * 179.74588 * 5 4 3 8 8 C 1.46899 * 106.35479 * 0.37757 * 7 5 4 9 9 C 1.46456 * 127.05925 * 179.88801 * 8 7 5 10 10 O 1.21347 * 119.99784 * 179.68200 * 9 8 7 11 11 C 1.50694 * 120.00550 * 359.68416 * 9 8 7 12 12 N 1.46892 * 109.47634 * 179.97438 * 11 9 8 13 13 C 1.46851 * 111.00061 * 66.04553 * 12 11 9 14 14 C 1.53035 * 109.52351 * 185.84117 * 13 12 11 15 15 C 1.53114 * 109.28054 * 300.82182 * 14 13 12 16 16 C 1.53119 * 109.16060 * 57.65437 * 15 14 13 17 17 H 1.09001 * 109.50224 * 62.33025 * 16 15 14 18 18 C 1.50706 * 109.50101 * 182.40515 * 16 15 14 19 19 H 1.07999 * 119.99515 * 120.00663 * 18 16 15 20 20 C 1.37870 * 120.00176 * 300.00129 * 18 16 15 21 21 N 1.31520 * 119.99883 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00043 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47288 * 59.99994 * 22 20 18 24 24 H 1.48503 * 109.47086 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46819 * 299.99648 * 22 20 18 26 26 C 1.46842 * 111.00485 * 190.25695 * 12 11 9 27 27 C 1.34496 * 124.77719 * 89.99739 * 4 3 2 28 28 C 1.50702 * 125.91890 * 0.02562 * 27 4 3 29 29 H 1.08001 * 120.00494 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00100 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00494 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46960 * 4.99219 * 3 2 1 33 33 H 1.09003 * 109.47288 * 245.00188 * 3 2 1 34 34 H 1.09002 * 109.46661 * 90.00616 * 6 5 4 35 35 H 1.09003 * 109.46852 * 209.99770 * 6 5 4 36 36 H 1.09000 * 109.47501 * 330.00245 * 6 5 4 37 37 H 1.08000 * 126.82194 * 180.25274 * 7 5 4 38 38 H 1.09000 * 109.46704 * 59.99693 * 11 9 8 39 39 H 1.08998 * 109.47077 * 300.00126 * 11 9 8 40 40 H 1.09002 * 109.45716 * 65.82468 * 13 12 11 41 41 H 1.08998 * 109.46048 * 305.86219 * 13 12 11 42 42 H 1.09005 * 109.50046 * 180.88323 * 14 13 12 43 43 H 1.08997 * 109.53619 * 60.78727 * 14 13 12 44 44 H 1.09007 * 109.52422 * 297.75149 * 15 14 13 45 45 H 1.09003 * 109.57878 * 177.59661 * 15 14 13 46 46 H 0.97004 * 119.99507 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.45960 * 54.14537 * 26 12 11 48 48 H 1.08996 * 109.46282 * 294.17945 * 26 12 11 49 49 H 1.09005 * 109.46504 * 270.02049 * 28 27 4 50 50 H 1.08999 * 109.47335 * 30.01877 * 28 27 4 51 51 H 1.09001 * 109.47400 * 150.02062 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.6926 1.8055 2.3757 6 6 1.3626 2.3773 2.7943 7 6 3.7690 1.6761 3.1692 8 6 4.8249 1.0799 2.3400 9 6 6.1893 0.7456 2.7541 10 8 6.9599 0.2484 1.9595 11 6 6.6363 1.0190 4.1670 12 7 8.0340 0.5972 4.3288 13 6 8.9313 1.4247 3.5123 14 6 10.3544 0.8674 3.5916 15 6 10.8168 0.8675 5.0512 16 6 9.8386 0.0387 5.8883 17 1 9.8447 -0.9937 5.5390 18 6 10.2535 0.0823 7.3365 19 1 9.5790 0.4814 8.0796 20 6 11.4939 -0.3873 7.7127 21 7 12.3154 -0.8729 6.8076 22 14 12.0079 -0.3339 9.5078 23 1 11.0588 -1.1382 10.3186 24 1 13.3760 -0.8942 9.6479 25 1 11.9973 1.0727 9.9840 26 6 8.4305 0.6201 5.7425 27 6 4.2644 0.8936 1.0904 28 6 4.9573 0.3023 -0.1102 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0894 33 1 2.6212 1.4026 -0.9314 34 1 0.7274 1.5779 3.1759 35 1 1.5170 3.1225 3.5747 36 1 0.8815 2.8451 1.9353 37 1 3.8438 1.9567 4.2094 38 1 6.0066 0.4626 4.8613 39 1 6.5519 2.0856 4.3748 40 1 8.9209 2.4487 3.8856 41 1 8.5937 1.4126 2.4760 42 1 11.0230 1.4910 2.9980 43 1 10.3688 -0.1518 3.2053 44 1 10.8405 1.8909 5.4258 45 1 11.8137 0.4319 5.1186 46 1 13.1880 -1.2037 7.0724 47 1 7.7291 0.0236 6.3260 48 1 8.4225 1.6478 6.1054 49 1 4.8096 -0.7777 -0.1194 50 1 4.5398 0.7339 -1.0198 51 1 6.0236 0.5228 -0.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000661149366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:20 Heat of formation + Delta-G solvation = 8.854197 kcal Electronic energy + Delta-G solvation = -28268.297026 eV Core-core repulsion = 24553.942295 eV Total energy + Delta-G solvation = -3714.354730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41293 -40.47470 -38.88867 -36.05702 -35.47465 -33.67688 -33.49927 -32.37742 -31.66123 -30.12481 -29.07139 -26.92453 -26.72604 -25.68029 -23.88753 -23.24674 -22.45110 -21.16586 -20.39877 -20.33475 -19.18047 -18.39128 -17.52136 -16.81664 -16.70151 -16.50250 -16.16487 -15.99505 -15.77591 -15.54868 -14.97335 -14.80341 -14.59050 -14.37674 -14.25017 -14.11947 -14.08551 -14.00387 -13.69306 -13.46238 -13.26101 -13.19316 -12.98688 -12.81292 -12.79269 -12.72932 -12.52699 -12.44373 -12.29108 -12.06939 -11.78772 -11.72537 -11.43160 -11.04242 -10.65813 -10.54349 -10.44018 -10.20878 -9.55960 -9.09908 -8.89942 -8.05016 -6.20126 0.47017 1.07844 1.41736 1.42922 1.45293 1.52711 2.04887 2.33822 2.44579 2.95493 3.21253 3.48168 3.71310 3.84286 3.87182 3.96874 4.11925 4.19310 4.23888 4.26943 4.37486 4.45696 4.47301 4.49976 4.56581 4.62232 4.65061 4.71448 4.75166 4.76714 4.83256 4.88715 4.94602 4.96054 4.99767 5.05449 5.12493 5.14843 5.19270 5.35465 5.39245 5.52427 5.57477 5.64992 5.65162 5.86911 5.96826 6.12524 6.16133 6.21998 6.28481 6.37741 6.47030 6.91900 6.93744 7.47508 8.99713 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.002265 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.744742 B =12360.157435 C =12968.896673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.197 4.197 3 C 0.120 3.880 4 N -0.426 5.426 5 C 0.011 3.989 6 C -0.080 4.080 7 C -0.171 4.171 8 C -0.291 4.291 9 C 0.425 3.575 10 O -0.488 6.488 11 C 0.019 3.981 12 N -0.544 5.544 13 C 0.068 3.932 14 C -0.107 4.107 15 C -0.101 4.101 16 C 0.052 3.948 17 H -0.009 1.009 18 C -0.534 4.534 19 H 0.056 0.944 20 C 0.010 3.990 21 N -0.918 5.918 22 Si 0.959 3.041 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.270 1.270 26 C 0.082 3.918 27 C 0.099 3.901 28 C -0.090 4.090 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.156 0.844 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.026 0.974 45 H 0.059 0.941 46 H 0.260 0.740 47 H 0.062 0.938 48 H 0.023 0.977 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.051 8.072 -15.484 33.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.216 4.216 3 C 0.000 4.000 4 N -0.102 5.102 5 C -0.097 4.097 6 C -0.137 4.137 7 C -0.194 4.194 8 C -0.300 4.300 9 C 0.307 3.693 10 O -0.367 6.367 11 C -0.110 4.110 12 N -0.269 5.269 13 C -0.059 4.059 14 C -0.145 4.145 15 C -0.140 4.140 16 C 0.033 3.967 17 H 0.010 0.990 18 C -0.573 4.573 19 H 0.074 0.926 20 C -0.189 4.189 21 N -0.557 5.557 22 Si 0.784 3.216 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.195 1.195 26 C -0.045 4.045 27 C -0.019 4.019 28 C -0.147 4.147 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.173 0.827 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.041 0.959 49 H 0.096 0.904 50 H 0.109 0.891 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.696 7.286 -16.321 32.963 hybrid contribution 0.878 0.351 1.407 1.695 sum -26.819 7.637 -14.914 31.623 Atomic orbital electron populations 1.24148 0.95033 1.03678 0.95794 1.23038 0.96850 0.97618 1.04075 1.21282 0.92413 0.98011 0.88283 1.43800 1.09294 1.46414 1.10675 1.20688 0.98913 1.05745 0.84330 1.20426 0.89657 1.00982 1.02617 1.22046 0.91800 1.05840 0.99737 1.21018 0.96200 1.17135 0.95608 1.21591 0.85712 0.73286 0.88741 1.90445 1.55956 1.35400 1.54910 1.22358 0.90573 1.01015 0.97020 1.61707 1.01533 1.54609 1.09041 1.22042 0.92886 0.93135 0.97848 1.21534 0.95459 1.00046 0.97471 1.21458 1.01572 0.97746 0.93186 1.18589 0.90384 0.93650 0.94071 0.99047 1.21481 1.00970 1.41058 0.93786 0.92580 1.25799 0.96667 0.94790 1.01611 1.70062 1.08773 1.42132 1.34735 0.85604 0.77166 0.78586 0.80227 1.19535 1.21088 1.19461 1.22029 0.97966 0.98108 0.86403 1.21008 0.85051 0.99143 0.96691 1.20528 1.00683 1.00701 0.92788 0.86300 0.87245 0.88124 0.86328 0.87221 0.90332 0.89191 0.90136 0.82688 0.87049 0.90834 0.95682 0.90286 0.91513 0.93913 0.95550 0.92288 0.93110 0.91949 0.95922 0.90357 0.89126 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 14.32 67.79 0.97 0.10 16 2 C -0.20 -1.85 9.85 25.66 0.25 -1.60 16 3 C 0.12 1.09 6.00 85.63 0.51 1.61 16 4 N -0.43 -7.22 2.66 -498.43 -1.33 -8.54 16 5 C 0.01 0.18 6.84 40.95 0.28 0.46 16 6 C -0.08 -0.72 10.05 71.24 0.72 -0.01 16 7 C -0.17 -3.77 10.58 23.65 0.25 -3.52 16 8 C -0.29 -8.00 6.29 -18.87 -0.12 -8.11 16 9 C 0.43 14.15 6.80 27.83 0.19 14.33 16 10 O -0.49 -18.99 12.88 -3.24 -0.04 -19.04 16 11 C 0.02 0.61 5.01 85.56 0.43 1.04 16 12 N -0.54 -22.65 4.39 -900.98 -3.96 -26.61 16 13 C 0.07 2.78 5.11 86.32 0.44 3.22 16 14 C -0.11 -4.80 6.09 30.64 0.19 -4.61 16 15 C -0.10 -5.28 5.02 30.67 0.15 -5.12 16 16 C 0.05 2.83 2.27 -11.49 -0.03 2.81 16 17 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 18 C -0.53 -30.79 8.56 25.60 0.22 -30.58 16 19 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 20 C 0.01 0.56 5.30 84.65 0.45 1.01 16 21 N -0.92 -55.66 11.35 21.45 0.24 -55.41 16 22 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.08 3.73 4.68 86.33 0.40 4.14 16 27 C 0.10 2.29 6.94 42.15 0.29 2.58 16 28 C -0.09 -1.81 9.54 71.24 0.68 -1.13 16 29 H 0.12 0.25 7.84 -2.91 -0.02 0.22 16 30 H 0.11 0.56 8.06 -2.91 -0.02 0.53 16 31 H 0.10 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.12 0.53 6.53 -2.38 -0.02 0.51 16 33 H 0.11 0.76 6.88 -2.39 -0.02 0.74 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.42 6.92 -2.39 -0.02 0.40 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.11 3.37 7.98 -2.39 -0.02 3.35 16 39 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 40 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 3.14 5.80 -2.39 -0.01 3.13 16 42 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.06 3.42 6.15 -2.39 -0.01 3.41 16 46 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.06 2.74 8.01 -2.39 -0.02 2.72 16 48 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.09 1.21 6.92 -2.39 -0.02 1.19 16 51 H 0.08 1.95 6.52 -2.39 -0.02 1.94 16 Total: -1.00 -73.66 402.56 4.12 -69.54 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.89 Total: 16.43 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 6.28 Total: -23.38 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -5.04 Total: -90.56 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.04 Total: -19.04 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.66 4.12 -69.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661149366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.395 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds