Wall clock time and date at job start Tue Mar 31 2020 15:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34354 * 125.41649 * 2 1 4 4 C 1.46897 * 106.35736 * 180.02562 * 3 2 1 5 5 C 1.46448 * 127.06640 * 179.97438 * 4 3 2 6 6 O 1.21343 * 119.99877 * 180.02562 * 5 4 3 7 7 C 1.50697 * 119.99793 * 0.02562 * 5 4 3 8 8 N 1.46907 * 109.47229 * 179.97438 * 7 5 4 9 9 C 1.46846 * 110.99499 * 66.04393 * 8 7 5 10 10 C 1.53041 * 109.52144 * 185.84096 * 9 8 7 11 11 C 1.53117 * 109.27637 * 300.82064 * 10 9 8 12 12 C 1.53115 * 109.16060 * 57.65722 * 11 10 9 13 13 H 1.09000 * 109.50425 * 62.32445 * 12 11 10 14 14 C 1.50698 * 109.50652 * 182.39971 * 12 11 10 15 15 H 1.08002 * 119.99909 * 119.99326 * 14 12 11 16 16 C 1.37879 * 120.00230 * 300.00042 * 14 12 11 17 17 N 1.31518 * 119.99688 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00085 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47144 * 90.00032 * 18 16 14 20 20 H 1.48501 * 109.47177 * 209.99848 * 18 16 14 21 21 H 1.48503 * 109.47050 * 330.00267 * 18 16 14 22 22 C 1.46836 * 111.00262 * 190.25577 * 8 7 5 23 23 C 1.38228 * 105.86911 * 0.25965 * 4 3 2 24 24 C 1.50700 * 125.91617 * 179.73935 * 23 4 3 25 25 N 1.34482 * 108.15749 * 359.57612 * 23 4 3 26 26 C 1.46505 * 124.77033 * 180.18777 * 25 23 4 27 27 C 1.53008 * 117.49280 * 130.01036 * 26 25 23 28 28 C 1.52997 * 117.50115 * 61.35118 * 26 25 23 29 29 H 1.09006 * 109.47404 * 95.36078 * 1 2 3 30 30 H 1.08996 * 109.47361 * 215.36196 * 1 2 3 31 31 H 1.09007 * 109.47041 * 335.36055 * 1 2 3 32 32 H 1.07998 * 126.82408 * 359.96299 * 3 2 1 33 33 H 1.08996 * 109.47059 * 60.00112 * 7 5 4 34 34 H 1.08994 * 109.47282 * 299.99809 * 7 5 4 35 35 H 1.09004 * 109.46925 * 305.85712 * 9 8 7 36 36 H 1.09004 * 109.46368 * 65.82907 * 9 8 7 37 37 H 1.08997 * 109.50668 * 60.76304 * 10 9 8 38 38 H 1.08999 * 109.50203 * 180.88149 * 10 9 8 39 39 H 1.09007 * 109.51894 * 177.55693 * 11 10 9 40 40 H 1.08999 * 109.52837 * 297.75049 * 11 10 9 41 41 H 0.96994 * 119.99549 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.46242 * 294.17923 * 22 8 7 43 43 H 1.09002 * 109.46284 * 54.14526 * 22 8 7 44 44 H 1.09005 * 109.46929 * 90.02483 * 24 23 4 45 45 H 1.08997 * 109.47142 * 210.02431 * 24 23 4 46 46 H 1.09000 * 109.47419 * 330.02740 * 24 23 4 47 47 H 1.08999 * 115.54890 * 275.67345 * 26 25 23 48 48 H 1.08992 * 117.50243 * 359.97438 * 27 26 25 49 49 H 1.09000 * 117.49915 * 145.02341 * 27 26 25 50 50 H 1.08997 * 117.49986 * 214.97641 * 28 26 25 51 51 H 1.09002 * 117.49865 * 359.96886 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2856 1.0949 0.0000 4 6 3.6741 0.6152 -0.0006 5 6 4.8900 1.4315 -0.0014 6 8 5.9794 0.8972 -0.0023 7 6 4.7881 2.9350 -0.0010 8 7 6.1368 3.5173 -0.0013 9 6 6.8401 3.2150 -1.2544 10 6 8.2856 3.7091 -1.1617 11 6 8.2884 5.2184 -0.9042 12 6 7.5084 5.5105 0.3806 13 1 8.0036 5.0297 1.2242 14 6 7.4559 6.9990 0.6100 15 1 6.5029 7.5050 0.6565 16 6 8.6246 7.7151 0.7603 17 7 9.7851 7.0989 0.7040 18 14 8.5595 9.5603 1.0440 19 1 8.4956 9.8350 2.5019 20 1 9.7767 10.1919 0.4741 21 1 7.3544 10.1207 0.3814 22 6 6.0855 4.9642 0.2431 23 6 3.5971 -0.7649 -0.0070 24 6 4.7665 -1.7154 -0.0156 25 7 2.2980 -1.1122 -0.0006 26 6 1.8017 -2.4907 -0.0003 27 6 0.7470 -2.8615 1.0443 28 6 2.1810 -3.3779 1.1870 29 1 -0.3634 -0.0960 -1.0232 30 1 -0.3634 -0.8380 0.5947 31 1 -0.3633 0.9342 0.4285 32 1 1.9562 2.1234 -0.0006 33 1 4.2516 3.2626 0.8894 34 1 4.2502 3.2630 -0.8905 35 1 6.8345 2.1382 -1.4236 36 1 6.3378 3.7151 -2.0826 37 1 8.7926 3.1993 -0.3425 38 1 8.8029 3.4986 -2.0977 39 1 9.3152 5.5673 -0.7943 40 1 7.8160 5.7318 -1.7418 41 1 10.6072 7.6026 0.8101 42 1 5.5867 5.4562 -0.5920 43 1 5.5317 5.1580 1.1618 44 1 5.0517 -1.9498 1.0101 45 1 4.4855 -2.6325 -0.5332 46 1 5.6083 -1.2514 -0.5296 47 1 1.7286 -2.9641 -0.9794 48 1 0.4228 -2.0801 1.7316 49 1 -0.0196 -3.5794 0.7527 50 1 2.3571 -4.4352 0.9892 51 1 2.8002 -2.9362 1.9678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000661150580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:42 Heat of formation + Delta-G solvation = 35.202817 kcal Electronic energy + Delta-G solvation = -28424.684392 eV Core-core repulsion = 24711.472224 eV Total energy + Delta-G solvation = -3713.212168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69965 -39.10493 -37.46386 -36.97095 -33.54966 -32.85765 -31.76678 -30.96033 -29.71600 -29.38507 -27.33313 -24.85850 -24.78734 -23.51517 -23.15924 -22.03049 -21.42810 -21.04292 -19.23199 -18.53382 -18.20128 -17.04588 -16.27176 -16.20198 -15.40202 -14.99227 -14.87428 -14.39562 -14.36247 -14.29575 -14.13157 -13.65724 -13.42123 -13.22088 -13.20390 -12.90528 -12.71648 -12.56386 -12.46692 -12.29388 -12.20463 -12.02300 -11.95407 -11.51356 -11.50231 -11.14722 -11.10249 -11.08791 -10.88521 -10.59967 -10.53980 -9.94150 -9.71797 -9.49663 -9.24588 -8.75703 -8.70892 -8.57397 -8.19590 -8.06577 -7.48604 -5.88102 -3.94249 1.52932 2.19011 2.42597 2.90633 3.36611 3.41434 3.42959 3.45877 4.00353 4.08994 4.22861 4.31662 4.51628 4.57704 4.68157 4.88474 4.90493 4.97823 5.08598 5.14543 5.26047 5.29166 5.40455 5.41542 5.46453 5.52450 5.55760 5.68763 5.70526 5.80348 5.81740 5.89957 5.98682 6.04777 6.25051 6.29464 6.45412 6.53240 6.66338 6.73330 6.89414 6.93817 6.98666 7.09442 7.11118 7.37952 7.52604 7.82468 7.84892 7.91541 8.15696 8.21063 8.30063 8.58661 9.10054 9.69297 11.17775 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.002309 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.457325 B =12121.453689 C =12785.043934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.005 3.995 3 C -0.151 4.151 4 C -0.258 4.258 5 C 0.425 3.575 6 O -0.451 6.451 7 C 0.018 3.982 8 N -0.526 5.526 9 C 0.060 3.940 10 C -0.114 4.114 11 C -0.110 4.110 12 C 0.055 3.945 13 H 0.035 0.965 14 C -0.513 4.513 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.068 3.932 23 C 0.107 3.893 24 C -0.091 4.091 25 N -0.413 5.413 26 C 0.043 3.957 27 C -0.169 4.169 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.015 0.985 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.018 0.982 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.131 0.869 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.984 -22.157 -2.208 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.175 4.175 4 C -0.266 4.266 5 C 0.303 3.697 6 O -0.326 6.326 7 C -0.111 4.111 8 N -0.251 5.251 9 C -0.067 4.067 10 C -0.152 4.152 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.053 0.947 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.059 4.059 23 C -0.009 4.009 24 C -0.148 4.148 25 N -0.090 5.090 26 C -0.060 4.060 27 C -0.206 4.206 28 C -0.206 4.206 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.165 0.835 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.117 0.883 47 H 0.148 0.852 48 H 0.125 0.875 49 H 0.130 0.870 50 H 0.130 0.870 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.100 -22.900 -1.820 29.876 hybrid contribution -0.701 1.516 -0.565 1.763 sum -19.801 -21.385 -2.384 29.241 Atomic orbital electron populations 1.20428 0.88097 1.03406 1.02491 1.20137 0.93497 0.85185 1.11289 1.21864 0.90935 0.97560 1.07138 1.21127 0.94659 0.91931 1.18842 1.21432 0.86497 0.90397 0.71379 1.90460 1.29841 1.75424 1.36887 1.22270 0.93104 0.93416 1.02338 1.61821 1.13581 1.14403 1.35268 1.22144 0.95697 1.00044 0.88865 1.21628 0.94257 0.99380 0.99928 1.21652 1.04183 0.91005 0.98000 1.18658 0.88712 0.94466 0.94569 0.94720 1.21155 0.92366 0.92691 1.48949 0.92880 1.24944 0.95564 0.98081 0.95345 1.69906 0.97180 1.35324 1.50252 0.86636 0.77357 0.85926 0.78283 1.20762 1.21340 1.20064 1.22337 1.01367 0.83732 0.98431 1.20829 0.84314 0.94230 1.01488 1.20537 0.94542 0.96469 1.03262 1.42914 1.04981 1.04474 1.56602 1.21965 1.05227 0.82314 0.96453 1.23401 0.92921 1.03591 1.00685 1.23404 0.98302 0.99883 0.99055 0.91376 0.91436 0.90190 0.83504 0.88224 0.92620 0.91022 0.96640 0.92013 0.93782 0.89202 0.95313 0.93129 0.96342 0.92320 0.90553 0.91945 0.88300 0.85167 0.87472 0.87028 0.87018 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 9.96 36.01 0.36 -0.21 16 2 C 0.01 0.05 6.73 -81.89 -0.55 -0.50 16 3 C -0.15 -1.79 10.58 -37.45 -0.40 -2.18 16 4 C -0.26 -3.61 6.29 -103.09 -0.65 -4.26 16 5 C 0.42 7.02 6.80 -31.01 -0.21 6.81 16 6 O -0.45 -8.54 12.88 5.50 0.07 -8.47 16 7 C 0.02 0.30 5.01 -4.97 -0.02 0.27 16 8 N -0.53 -10.84 4.39 -236.11 -1.04 -11.88 16 9 C 0.06 1.22 5.11 -3.83 -0.02 1.20 16 10 C -0.11 -2.50 6.09 -26.65 -0.16 -2.66 16 11 C -0.11 -2.78 5.02 -26.61 -0.13 -2.91 16 12 C 0.05 1.44 2.26 -91.69 -0.21 1.23 16 13 H 0.03 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.51 -14.48 8.56 -34.44 -0.29 -14.78 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -26.13 11.35 55.43 0.63 -25.50 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.07 1.53 4.68 -3.84 -0.02 1.51 16 23 C 0.11 1.31 6.87 -81.43 -0.56 0.75 16 24 C -0.09 -0.96 9.21 36.01 0.33 -0.63 16 25 N -0.41 -4.08 2.97 -100.60 -0.30 -4.38 16 26 C 0.04 0.28 5.67 -67.93 -0.38 -0.11 16 27 C -0.17 -0.76 8.82 -26.69 -0.24 -1.00 16 28 C -0.17 -0.86 10.02 -26.69 -0.27 -1.13 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.36 5.21 -51.93 -0.27 0.08 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.10 1.53 7.98 -51.93 -0.41 1.11 16 34 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 35 H 0.07 1.42 5.80 -51.93 -0.30 1.12 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 2.50 6.15 -51.92 -0.32 2.18 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.51 7.77 -51.93 -0.40 0.11 16 46 H 0.10 1.25 6.53 -51.93 -0.34 0.91 16 47 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.11 0.56 6.92 -51.93 -0.36 0.21 16 49 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 397.87 15.07 6.00 6.00 Total: -1.00 -32.81 397.87 -11.88 -44.70 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.70 Total: -0.26 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -3.52 Total: -16.93 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.71 Total: -41.76 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.81 -11.88 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661150580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.902 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds