Wall clock time and date at job start Tue Mar 31 2020 15:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34352 * 125.41323 * 2 1 4 4 C 1.46902 * 106.35451 * 180.02562 * 3 2 1 5 5 C 1.46449 * 127.06391 * 179.97438 * 4 3 2 6 6 O 1.21345 * 119.99712 * 180.02562 * 5 4 3 7 7 C 1.50695 * 119.99827 * 0.02562 * 5 4 3 8 8 N 1.46905 * 109.47025 * 180.02562 * 7 5 4 9 9 C 1.46850 * 111.00274 * 294.21518 * 8 7 5 10 10 C 1.53027 * 109.52359 * 174.16107 * 9 8 7 11 11 C 1.53118 * 109.28247 * 59.17923 * 10 9 8 12 12 C 1.53121 * 109.15858 * 302.34579 * 11 10 9 13 13 H 1.09008 * 109.50140 * 297.71204 * 12 11 10 14 14 C 1.50699 * 109.50618 * 177.59689 * 12 11 10 15 15 H 1.07999 * 119.99748 * 272.12959 * 14 12 11 16 16 C 1.37878 * 120.00145 * 92.12320 * 14 12 11 17 17 N 1.31515 * 119.99984 * 186.94653 * 16 14 12 18 18 Si 1.86795 * 120.00167 * 6.94406 * 16 14 12 19 19 H 1.48508 * 109.46897 * 90.45738 * 18 16 14 20 20 H 1.48495 * 109.47501 * 210.45829 * 18 16 14 21 21 H 1.48501 * 109.47182 * 330.46006 * 18 16 14 22 22 C 1.46849 * 111.00030 * 170.00463 * 8 7 5 23 23 C 1.38225 * 105.87443 * 359.97438 * 4 3 2 24 24 C 1.50699 * 125.92234 * 179.97438 * 23 4 3 25 25 N 1.34491 * 108.15824 * 0.26712 * 23 4 3 26 26 C 1.46493 * 124.77891 * 179.74122 * 25 23 4 27 27 C 1.53008 * 117.49700 * 310.27714 * 26 25 23 28 28 C 1.53007 * 117.49750 * 241.62241 * 26 25 23 29 29 H 1.08991 * 109.47267 * 86.66888 * 1 2 3 30 30 H 1.09005 * 109.46917 * 206.66625 * 1 2 3 31 31 H 1.08995 * 109.47088 * 326.66080 * 1 2 3 32 32 H 1.08001 * 126.82427 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47994 * 300.00088 * 7 5 4 34 34 H 1.09003 * 109.47284 * 60.01094 * 7 5 4 35 35 H 1.09003 * 109.45619 * 294.17862 * 9 8 7 36 36 H 1.08997 * 109.46303 * 54.13988 * 9 8 7 37 37 H 1.09003 * 109.50748 * 299.23691 * 10 9 8 38 38 H 1.08999 * 109.50477 * 179.12010 * 10 9 8 39 39 H 1.08996 * 109.52709 * 182.44348 * 11 10 9 40 40 H 1.08997 * 109.52642 * 62.24946 * 11 10 9 41 41 H 0.96994 * 120.00603 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.46133 * 305.85592 * 22 8 7 43 43 H 1.08992 * 109.46320 * 65.82496 * 22 8 7 44 44 H 1.09006 * 109.46458 * 90.02530 * 24 23 4 45 45 H 1.09003 * 109.47192 * 330.02928 * 24 23 4 46 46 H 1.08995 * 109.47366 * 210.02158 * 24 23 4 47 47 H 1.08996 * 115.55655 * 95.94662 * 26 25 23 48 48 H 1.08996 * 117.49784 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49610 * 145.02276 * 27 26 25 50 50 H 1.09007 * 117.49450 * 214.97979 * 28 26 25 51 51 H 1.09000 * 117.49799 * 359.96581 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2856 1.0950 0.0000 4 6 3.6741 0.6153 -0.0006 5 6 4.8899 1.4316 -0.0014 6 8 5.9794 0.8973 -0.0023 7 6 4.7880 2.9351 -0.0010 8 7 6.1367 3.5173 -0.0025 9 6 6.8443 3.2095 1.2469 10 6 8.2893 3.7040 1.1515 11 6 8.2913 5.2146 0.9009 12 6 7.5069 5.5125 -0.3800 13 1 7.9989 5.0348 -1.2274 14 6 7.4536 7.0020 -0.6024 15 1 6.6616 7.5863 -0.1579 16 6 8.4160 7.6188 -1.3733 17 7 8.4506 8.9309 -1.4565 18 14 9.6709 6.5909 -2.2997 19 1 9.1519 6.2803 -3.6560 20 1 10.9420 7.3495 -2.4178 21 1 9.9162 5.3258 -1.5618 22 6 6.0845 4.9655 -0.2402 23 6 3.5973 -0.7648 -0.0004 24 6 4.7667 -1.7154 -0.0014 25 7 2.2981 -1.1123 -0.0056 26 6 1.8017 -2.4906 -0.0125 27 6 2.3910 -3.4485 -1.0500 28 6 0.9590 -2.9320 -1.2109 29 1 -0.3633 0.0597 -1.0258 30 1 -0.3633 -0.9184 0.4612 31 1 -0.3633 0.8585 0.5648 32 1 1.9561 2.1235 -0.0004 33 1 4.2501 3.2632 -0.8904 34 1 4.2516 3.2627 0.8896 35 1 6.3447 3.7058 2.0789 36 1 6.8393 2.1319 1.4111 37 1 8.7936 3.1980 0.3282 38 1 8.8098 3.4893 2.0848 39 1 9.3176 5.5640 0.7890 40 1 7.8217 5.7240 1.7423 41 1 9.1274 9.3649 -1.9991 42 1 5.5276 5.1634 -1.1561 43 1 5.5886 5.4536 0.5988 44 1 5.0492 -1.9447 1.0262 45 1 5.6097 -1.2538 -0.5156 46 1 4.4869 -2.6351 -0.5151 47 1 1.5437 -2.9024 0.9631 48 1 3.1482 -3.0532 -1.7271 49 1 2.5202 -4.4903 -0.7569 50 1 0.1467 -3.6344 -1.0235 51 1 0.7735 -2.1967 -1.9938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000661150581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:45 Heat of formation + Delta-G solvation = 35.742245 kcal Electronic energy + Delta-G solvation = -28507.771141 eV Core-core repulsion = 24794.582364 eV Total energy + Delta-G solvation = -3713.188777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74201 -39.21294 -37.59829 -37.06965 -33.51768 -32.86247 -32.04424 -31.09209 -30.10724 -29.44961 -27.54714 -24.96370 -24.84140 -23.55860 -23.18128 -22.19992 -21.46409 -20.98429 -19.33368 -18.71142 -18.22914 -17.06914 -16.77256 -16.21803 -15.53560 -15.13621 -14.97868 -14.52541 -14.40688 -14.35335 -13.94388 -13.66718 -13.56014 -13.33146 -13.15873 -13.04585 -12.94219 -12.66590 -12.47552 -12.42601 -12.26605 -12.23969 -12.05856 -11.86371 -11.55663 -11.23596 -11.16018 -11.12172 -10.98482 -10.87290 -10.47257 -10.02355 -9.71928 -9.59726 -9.39314 -8.95579 -8.78744 -8.73121 -8.38462 -8.10609 -7.63121 -5.99361 -3.97519 1.47305 2.14992 2.39156 2.87601 3.35537 3.39886 3.47686 3.55235 3.97267 4.06285 4.19886 4.23795 4.52657 4.53678 4.63863 4.77733 4.89883 4.93339 5.04663 5.11892 5.24384 5.26004 5.32520 5.38196 5.40186 5.50149 5.52097 5.60205 5.63534 5.71907 5.77127 5.79803 5.84539 5.88323 6.06360 6.19096 6.20944 6.34585 6.46732 6.58294 6.68983 6.69762 6.82394 6.94476 7.00298 7.05852 7.06632 7.44371 7.59795 7.71570 7.72085 7.99205 8.07811 8.62462 9.05827 9.65512 11.13815 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.002475 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.332743 B =11310.217692 C =11672.631694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.006 3.994 3 C -0.151 4.151 4 C -0.259 4.259 5 C 0.426 3.574 6 O -0.453 6.453 7 C 0.018 3.982 8 N -0.531 5.531 9 C 0.059 3.941 10 C -0.117 4.117 11 C -0.112 4.112 12 C 0.019 3.981 13 H 0.041 0.959 14 C -0.510 4.510 15 H 0.070 0.930 16 C 0.071 3.929 17 N -0.903 5.903 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.259 1.259 22 C 0.073 3.927 23 C 0.108 3.892 24 C -0.099 4.099 25 N -0.412 5.412 26 C 0.043 3.957 27 C -0.171 4.171 28 C -0.167 4.167 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.023 0.977 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.131 0.869 48 H 0.108 0.892 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 -26.663 3.510 32.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.175 4.175 4 C -0.267 4.267 5 C 0.304 3.696 6 O -0.329 6.329 7 C -0.111 4.111 8 N -0.255 5.255 9 C -0.068 4.068 10 C -0.155 4.155 11 C -0.150 4.150 12 C 0.000 4.000 13 H 0.059 0.941 14 C -0.548 4.548 15 H 0.088 0.912 16 C -0.130 4.130 17 N -0.541 5.541 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.183 1.183 22 C -0.054 4.054 23 C -0.009 4.009 24 C -0.156 4.156 25 N -0.089 5.089 26 C -0.060 4.060 27 C -0.208 4.208 28 C -0.205 4.205 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.086 0.914 47 H 0.149 0.851 48 H 0.126 0.874 49 H 0.131 0.869 50 H 0.129 0.871 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.818 -27.282 3.045 32.193 hybrid contribution 0.001 0.123 0.184 0.221 sum -16.817 -27.159 3.229 32.106 Atomic orbital electron populations 1.20296 0.87990 1.02970 1.02549 1.20148 0.93538 0.85124 1.11187 1.21863 0.90896 0.97612 1.07095 1.21103 0.94634 0.91919 1.19018 1.21427 0.86524 0.90371 0.71272 1.90452 1.29867 1.75453 1.37114 1.22273 0.92840 0.93384 1.02618 1.61862 1.13890 1.14332 1.35433 1.22116 0.95044 1.00440 0.89229 1.21633 0.95180 0.98301 1.00382 1.21870 1.00617 0.92424 1.00086 1.19181 0.90799 0.95955 0.94077 0.94126 1.20970 1.12332 0.90287 1.31248 0.91164 1.25033 0.97072 0.94679 0.96211 1.69925 1.35403 1.08356 1.40420 0.86859 0.80923 0.81115 0.80821 1.20348 1.21818 1.18292 1.22270 1.00385 0.83386 0.99330 1.20829 0.84345 0.94234 1.01449 1.20695 0.94665 0.96841 1.03410 1.42931 1.04987 1.04496 1.56526 1.21967 1.05836 0.81755 0.96439 1.23439 0.97320 0.99261 1.00777 1.23383 0.94902 1.03384 0.98818 0.91219 0.91919 0.90229 0.83426 0.87998 0.92357 0.96237 0.90599 0.91935 0.93170 0.93136 0.93348 0.92800 0.91489 0.95830 0.90589 0.88258 0.91385 0.85132 0.87373 0.86903 0.87089 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.79 36.01 0.35 -0.16 16 2 C 0.01 0.06 6.78 -81.89 -0.56 -0.49 16 3 C -0.15 -1.72 10.58 -37.45 -0.40 -2.12 16 4 C -0.26 -3.49 6.29 -103.09 -0.65 -4.14 16 5 C 0.43 6.70 6.80 -31.01 -0.21 6.49 16 6 O -0.45 -8.17 12.86 5.50 0.07 -8.10 16 7 C 0.02 0.28 5.01 -4.98 -0.02 0.26 16 8 N -0.53 -10.30 4.40 -236.12 -1.04 -11.34 16 9 C 0.06 1.11 5.11 -3.84 -0.02 1.09 16 10 C -0.12 -2.30 6.09 -26.66 -0.16 -2.46 16 11 C -0.11 -2.52 5.26 -26.61 -0.14 -2.66 16 12 C 0.02 0.47 1.86 -91.69 -0.17 0.30 16 13 H 0.04 1.05 5.26 -51.92 -0.27 0.78 16 14 C -0.51 -14.56 8.86 -34.44 -0.31 -14.87 16 15 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 18 Si 0.88 22.42 27.08 -169.99 -4.60 17.82 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 22 C 0.07 1.57 4.72 -3.83 -0.02 1.55 16 23 C 0.11 1.26 6.82 -81.43 -0.56 0.71 16 24 C -0.10 -1.00 9.51 36.00 0.34 -0.66 16 25 N -0.41 -3.93 2.97 -100.60 -0.30 -4.23 16 26 C 0.04 0.26 5.62 -67.93 -0.38 -0.12 16 27 C -0.17 -0.82 8.69 -26.69 -0.23 -1.05 16 28 C -0.17 -0.74 10.07 -26.69 -0.27 -1.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.10 1.49 7.99 -51.93 -0.41 1.08 16 34 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.40 5.78 -51.93 -0.30 1.10 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 1.18 8.02 -51.93 -0.42 0.76 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 1.42 8.02 -51.93 -0.42 1.00 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 1.21 6.52 -51.93 -0.34 0.87 16 46 H 0.07 0.52 5.05 -51.93 -0.26 0.26 16 47 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.11 0.66 6.97 -51.93 -0.36 0.30 16 49 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -33.94 396.88 -11.30 -45.23 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.69 Total: -0.73 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.49 Total: -17.34 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.56 Total: -42.86 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.60 Total: 17.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.94 -11.30 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661150581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.974 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds