Wall clock time and date at job start Tue Mar 31 2020 15:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34352 * 125.41323 * 2 1 4 4 C 1.46902 * 106.35451 * 180.02562 * 3 2 1 5 5 C 1.46449 * 127.06391 * 179.97438 * 4 3 2 6 6 O 1.21345 * 119.99712 * 180.02562 * 5 4 3 7 7 C 1.50695 * 119.99827 * 0.02562 * 5 4 3 8 8 N 1.46905 * 109.47025 * 180.02562 * 7 5 4 9 9 C 1.46850 * 111.00274 * 294.21518 * 8 7 5 10 10 C 1.53027 * 109.52359 * 174.16107 * 9 8 7 11 11 C 1.53118 * 109.28247 * 59.17923 * 10 9 8 12 12 C 1.53121 * 109.15858 * 302.34579 * 11 10 9 13 13 H 1.09008 * 109.50140 * 297.71204 * 12 11 10 14 14 C 1.50699 * 109.50618 * 177.59689 * 12 11 10 15 15 H 1.07999 * 119.99748 * 272.12959 * 14 12 11 16 16 C 1.37878 * 120.00145 * 92.12320 * 14 12 11 17 17 N 1.31515 * 119.99984 * 186.94653 * 16 14 12 18 18 Si 1.86795 * 120.00167 * 6.94406 * 16 14 12 19 19 H 1.48508 * 109.46897 * 90.45738 * 18 16 14 20 20 H 1.48495 * 109.47501 * 210.45829 * 18 16 14 21 21 H 1.48501 * 109.47182 * 330.46006 * 18 16 14 22 22 C 1.46849 * 111.00030 * 170.00463 * 8 7 5 23 23 C 1.38225 * 105.87443 * 359.97438 * 4 3 2 24 24 C 1.50699 * 125.92234 * 179.97438 * 23 4 3 25 25 N 1.34491 * 108.15824 * 0.26712 * 23 4 3 26 26 C 1.46493 * 124.77891 * 179.74122 * 25 23 4 27 27 C 1.53008 * 117.49700 * 310.27714 * 26 25 23 28 28 C 1.53007 * 117.49750 * 241.62241 * 26 25 23 29 29 H 1.08991 * 109.47267 * 86.66888 * 1 2 3 30 30 H 1.09005 * 109.46917 * 206.66625 * 1 2 3 31 31 H 1.08995 * 109.47088 * 326.66080 * 1 2 3 32 32 H 1.08001 * 126.82427 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47994 * 300.00088 * 7 5 4 34 34 H 1.09003 * 109.47284 * 60.01094 * 7 5 4 35 35 H 1.09003 * 109.45619 * 294.17862 * 9 8 7 36 36 H 1.08997 * 109.46303 * 54.13988 * 9 8 7 37 37 H 1.09003 * 109.50748 * 299.23691 * 10 9 8 38 38 H 1.08999 * 109.50477 * 179.12010 * 10 9 8 39 39 H 1.08996 * 109.52709 * 182.44348 * 11 10 9 40 40 H 1.08997 * 109.52642 * 62.24946 * 11 10 9 41 41 H 0.96994 * 120.00603 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.46133 * 305.85592 * 22 8 7 43 43 H 1.08992 * 109.46320 * 65.82496 * 22 8 7 44 44 H 1.09006 * 109.46458 * 90.02530 * 24 23 4 45 45 H 1.09003 * 109.47192 * 330.02928 * 24 23 4 46 46 H 1.08995 * 109.47366 * 210.02158 * 24 23 4 47 47 H 1.08996 * 115.55655 * 95.94662 * 26 25 23 48 48 H 1.08996 * 117.49784 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49610 * 145.02276 * 27 26 25 50 50 H 1.09007 * 117.49450 * 214.97979 * 28 26 25 51 51 H 1.09000 * 117.49799 * 359.96581 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2856 1.0950 0.0000 4 6 3.6741 0.6153 -0.0006 5 6 4.8899 1.4316 -0.0014 6 8 5.9794 0.8973 -0.0023 7 6 4.7880 2.9351 -0.0010 8 7 6.1367 3.5173 -0.0025 9 6 6.8443 3.2095 1.2469 10 6 8.2893 3.7040 1.1515 11 6 8.2913 5.2146 0.9009 12 6 7.5069 5.5125 -0.3800 13 1 7.9989 5.0348 -1.2274 14 6 7.4536 7.0020 -0.6024 15 1 6.6616 7.5863 -0.1579 16 6 8.4160 7.6188 -1.3733 17 7 8.4506 8.9309 -1.4565 18 14 9.6709 6.5909 -2.2997 19 1 9.1519 6.2803 -3.6560 20 1 10.9420 7.3495 -2.4178 21 1 9.9162 5.3258 -1.5618 22 6 6.0845 4.9655 -0.2402 23 6 3.5973 -0.7648 -0.0004 24 6 4.7667 -1.7154 -0.0014 25 7 2.2981 -1.1123 -0.0056 26 6 1.8017 -2.4906 -0.0125 27 6 2.3910 -3.4485 -1.0500 28 6 0.9590 -2.9320 -1.2109 29 1 -0.3633 0.0597 -1.0258 30 1 -0.3633 -0.9184 0.4612 31 1 -0.3633 0.8585 0.5648 32 1 1.9561 2.1235 -0.0004 33 1 4.2501 3.2632 -0.8904 34 1 4.2516 3.2627 0.8896 35 1 6.3447 3.7058 2.0789 36 1 6.8393 2.1319 1.4111 37 1 8.7936 3.1980 0.3282 38 1 8.8098 3.4893 2.0848 39 1 9.3176 5.5640 0.7890 40 1 7.8217 5.7240 1.7423 41 1 9.1274 9.3649 -1.9991 42 1 5.5276 5.1634 -1.1561 43 1 5.5886 5.4536 0.5988 44 1 5.0492 -1.9447 1.0262 45 1 5.6097 -1.2538 -0.5156 46 1 4.4869 -2.6351 -0.5151 47 1 1.5437 -2.9024 0.9631 48 1 3.1482 -3.0532 -1.7271 49 1 2.5202 -4.4903 -0.7569 50 1 0.1467 -3.6344 -1.0235 51 1 0.7735 -2.1967 -1.9938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000661150581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:44 Heat of formation + Delta-G solvation = 16.647743 kcal Electronic energy + Delta-G solvation = -28508.599141 eV Core-core repulsion = 24794.582364 eV Total energy + Delta-G solvation = -3714.016777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50173 -40.55199 -39.00238 -37.66147 -35.38104 -33.92890 -33.58867 -32.04650 -31.89450 -30.15938 -28.79241 -26.91099 -25.85584 -24.46321 -23.55501 -23.43757 -23.00098 -22.11390 -20.46194 -20.16338 -19.23256 -18.95045 -17.71646 -17.03624 -16.88582 -16.43063 -16.16218 -15.86472 -15.60899 -15.34092 -15.01810 -14.96789 -14.81977 -14.63553 -14.43266 -14.21747 -14.13518 -13.95083 -13.68504 -13.46907 -13.39157 -13.04825 -12.93934 -12.85725 -12.83598 -12.63056 -12.50794 -12.33420 -12.22643 -11.80391 -11.74880 -11.60707 -11.53535 -11.29990 -11.22065 -10.88910 -10.61715 -10.27539 -9.58459 -9.15170 -8.92792 -8.28133 -6.30065 0.45110 1.35427 1.36507 1.37647 1.50970 1.73887 2.31164 2.37367 2.48746 2.88004 3.09478 3.47555 3.52423 3.72026 3.72757 3.91360 4.03627 4.10294 4.15986 4.18307 4.29488 4.39994 4.47715 4.49656 4.54163 4.60177 4.64377 4.65599 4.71419 4.72124 4.77349 4.82094 4.82806 4.84812 4.90758 4.95192 5.00485 5.04273 5.08720 5.11511 5.13998 5.21517 5.26360 5.34012 5.56240 5.66125 5.75224 5.84898 6.12604 6.16602 6.22990 6.36657 6.39235 6.76902 6.90295 7.35881 8.88567 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.002475 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.332743 B =11310.217692 C =11672.631694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.012 3.988 3 C -0.172 4.172 4 C -0.293 4.293 5 C 0.428 3.572 6 O -0.486 6.486 7 C 0.018 3.982 8 N -0.543 5.543 9 C 0.063 3.937 10 C -0.110 4.110 11 C -0.109 4.109 12 C 0.017 3.983 13 H 0.031 0.969 14 C -0.511 4.511 15 H 0.034 0.966 16 C 0.016 3.984 17 N -0.948 5.948 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.248 1.248 22 C 0.084 3.916 23 C 0.103 3.897 24 C -0.094 4.094 25 N -0.408 5.408 26 C 0.022 3.978 27 C -0.169 4.169 28 C -0.153 4.153 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.265 0.735 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.149 0.851 48 H 0.092 0.908 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.224 -30.152 3.756 35.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.195 4.195 4 C -0.301 4.301 5 C 0.309 3.691 6 O -0.365 6.365 7 C -0.110 4.110 8 N -0.268 5.268 9 C -0.064 4.064 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.003 4.003 13 H 0.049 0.951 14 C -0.549 4.549 15 H 0.053 0.947 16 C -0.181 4.181 17 N -0.588 5.588 18 Si 0.762 3.238 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.172 1.172 22 C -0.043 4.043 23 C -0.015 4.015 24 C -0.151 4.151 25 N -0.083 5.083 26 C -0.079 4.079 27 C -0.206 4.206 28 C -0.191 4.191 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.173 0.827 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.166 0.834 48 H 0.111 0.889 49 H 0.154 0.846 50 H 0.155 0.845 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.482 -30.795 3.298 36.067 hybrid contribution 0.355 1.174 0.136 1.234 sum -18.128 -29.621 3.433 34.897 Atomic orbital electron populations 1.20397 0.85401 1.04196 1.03538 1.20681 0.95086 0.84717 1.09071 1.22056 0.90279 0.98784 1.08387 1.21030 0.94552 0.92836 1.21659 1.21522 0.87007 0.90211 0.70370 1.90433 1.30997 1.75767 1.39259 1.22352 0.91095 0.93807 1.03764 1.61770 1.16232 1.12595 1.36179 1.22095 0.94400 1.00807 0.89134 1.21574 0.96189 0.95547 1.01462 1.21744 0.99388 0.94810 0.98735 1.19146 0.93116 0.93254 0.94759 0.95094 1.21205 1.10986 0.92318 1.30430 0.94742 1.25827 0.99319 0.95654 0.97271 1.70051 1.36791 1.10128 1.41833 0.85864 0.78482 0.79798 0.79631 1.19634 1.21242 1.17203 1.21967 0.98135 0.84992 0.99203 1.21021 0.85751 0.93986 1.00731 1.20656 0.93454 0.97356 1.03667 1.43179 1.04187 1.06056 1.54893 1.22356 1.07381 0.80182 0.98016 1.23521 0.97310 1.00060 0.99731 1.23460 0.95406 1.03065 0.97121 0.90189 0.90332 0.89430 0.82653 0.87087 0.90859 0.95542 0.89928 0.92829 0.90367 0.94248 0.93630 0.92579 0.91742 0.96126 0.90137 0.90591 0.88926 0.83420 0.88916 0.84589 0.84501 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.79 71.24 0.70 -0.06 16 2 C 0.01 0.20 6.78 40.95 0.28 0.48 16 3 C -0.17 -3.76 10.58 23.65 0.25 -3.51 16 4 C -0.29 -7.79 6.29 -18.87 -0.12 -7.91 16 5 C 0.43 13.46 6.80 27.82 0.19 13.65 16 6 O -0.49 -17.65 12.86 -3.23 -0.04 -17.69 16 7 C 0.02 0.56 5.01 85.55 0.43 0.99 16 8 N -0.54 -20.85 4.40 -900.94 -3.96 -24.81 16 9 C 0.06 2.30 5.11 86.32 0.44 2.74 16 10 C -0.11 -4.17 6.09 30.64 0.19 -3.99 16 11 C -0.11 -4.87 5.26 30.67 0.16 -4.71 16 12 C 0.02 0.82 1.86 -11.49 -0.02 0.80 16 13 H 0.03 1.59 5.26 -2.38 -0.01 1.58 16 14 C -0.51 -30.00 8.86 25.60 0.23 -29.77 16 15 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 16 C 0.02 0.98 5.47 84.65 0.46 1.45 16 17 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 18 Si 0.94 46.79 27.08 68.60 1.86 48.65 16 19 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.25 -11.88 6.54 99.48 0.65 -11.22 16 22 C 0.08 3.64 4.72 86.32 0.41 4.05 16 23 C 0.10 2.33 6.82 42.15 0.29 2.62 16 24 C -0.09 -1.84 9.51 71.24 0.68 -1.16 16 25 N -0.41 -6.97 2.97 -472.20 -1.40 -8.38 16 26 C 0.02 0.21 5.62 45.00 0.25 0.46 16 27 C -0.17 -1.13 8.69 30.62 0.27 -0.86 16 28 C -0.15 -0.85 10.07 30.62 0.31 -0.54 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.54 7.68 -2.38 -0.02 0.52 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.11 3.22 7.99 -2.39 -0.02 3.20 16 34 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 2.96 5.78 -2.39 -0.01 2.94 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.04 1.82 8.02 -2.39 -0.02 1.80 16 40 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.06 2.77 8.02 -2.38 -0.02 2.75 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.08 1.88 6.52 -2.39 -0.02 1.86 16 46 H 0.09 1.27 5.05 -2.39 -0.01 1.26 16 47 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.09 0.95 6.97 -2.39 -0.02 0.93 16 49 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.14 0.08 8.14 -2.38 -0.02 0.06 16 51 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -75.31 396.88 2.98 -72.33 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.85 Total: 15.36 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 5.38 Total: -25.30 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -5.07 Total: -93.36 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.04 Total: -17.69 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.86 Total: 48.65 kcal Total: -75.31 2.98 -72.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661150581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.977 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds