Wall clock time and date at job start Tue Mar 31 2020 16:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 110.27687 * 2 1 4 4 C 1.52999 * 109.47247 * 59.29403 * 3 2 1 5 5 C 1.50707 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99618 * 269.72845 * 5 4 3 7 7 C 1.38240 * 119.99587 * 179.77130 * 6 5 4 8 8 C 1.38238 * 119.99891 * 0.49787 * 7 6 5 9 9 C 1.38236 * 119.99902 * 359.75388 * 8 7 6 10 10 C 1.38230 * 119.99989 * 90.00046 * 5 4 3 11 11 C 1.54601 * 110.30605 * 122.08584 * 2 1 3 12 12 C 1.54941 * 102.91892 * 97.05482 * 11 2 1 13 13 N 1.48532 * 103.22613 * 37.41773 * 12 11 2 14 14 C 1.46904 * 110.99707 * 200.27439 * 13 12 11 15 15 C 1.50697 * 109.46878 * 176.42391 * 14 13 12 16 16 O 1.21283 * 120.00175 * 6.00696 * 15 14 13 17 17 N 1.34774 * 120.00010 * 186.00233 * 15 14 13 18 18 C 1.46501 * 120.00205 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47197 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00156 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99929 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00318 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47374 * 90.00026 * 23 21 19 25 25 H 1.48506 * 109.47169 * 210.00096 * 23 21 19 26 26 H 1.48500 * 109.47086 * 329.99973 * 23 21 19 27 27 C 1.48127 * 105.82298 * 320.73227 * 13 12 11 28 28 H 1.09001 * 109.46844 * 60.70192 * 1 2 3 29 29 H 1.08996 * 109.47610 * 180.70239 * 1 2 3 30 30 H 1.09005 * 109.47490 * 300.70799 * 1 2 3 31 31 H 1.09003 * 109.47005 * 299.29699 * 3 2 1 32 32 H 1.09005 * 109.47411 * 179.29955 * 3 2 1 33 33 H 1.08997 * 109.47491 * 299.99760 * 4 3 2 34 34 H 1.08993 * 109.47266 * 60.00609 * 4 3 2 35 35 H 1.07997 * 120.00329 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.99701 * 180.23302 * 7 6 5 37 37 H 1.08002 * 119.99614 * 179.72478 * 8 7 6 38 38 H 1.07996 * 119.99631 * 179.97438 * 9 8 7 39 39 H 1.07996 * 120.00476 * 0.02562 * 10 5 4 40 40 H 1.08996 * 110.72627 * 215.41636 * 11 2 1 41 41 H 1.09003 * 110.71975 * 338.52377 * 11 2 1 42 42 H 1.09004 * 110.66205 * 155.84824 * 12 11 2 43 43 H 1.08992 * 110.66738 * 278.81173 * 12 11 2 44 44 H 1.08994 * 109.47353 * 296.42742 * 14 13 12 45 45 H 1.09009 * 109.46893 * 56.42654 * 14 13 12 46 46 H 0.97004 * 119.99716 * 0.02562 * 17 15 14 47 47 H 1.08997 * 109.46972 * 299.99649 * 18 17 15 48 48 H 1.09005 * 109.46884 * 60.00280 * 18 17 15 49 49 H 0.97005 * 119.99750 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.99155 * 266.08054 * 27 13 12 51 51 H 1.08997 * 109.94689 * 144.71668 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4351 0.0000 4 6 1.5460 2.1688 1.2402 5 6 2.0678 3.5827 1.2398 6 6 3.2702 3.8757 1.8557 7 6 3.7512 5.1718 1.8513 8 6 3.0247 6.1765 1.2399 9 6 1.8198 5.8842 0.6286 10 6 1.3414 4.5873 0.6285 11 6 2.0665 -0.7702 1.2285 12 6 2.3607 -2.1784 0.6530 13 7 2.8841 -1.8876 -0.7062 14 6 2.7723 -3.0658 -1.5765 15 6 3.2301 -2.7083 -2.9671 16 8 3.7133 -1.6174 -3.1848 17 7 3.1025 -3.6008 -3.9689 18 6 3.5480 -3.2535 -5.3206 19 6 3.2966 -4.4156 -6.2465 20 1 2.8492 -5.3221 -5.8661 21 6 3.6366 -4.3213 -7.5793 22 7 4.1808 -3.2172 -8.0425 23 14 3.3243 -5.7615 -8.7272 24 1 1.9686 -5.6369 -9.3203 25 1 4.3404 -5.7607 -9.8102 26 1 3.4157 -7.0319 -7.9636 27 6 2.0645 -0.7673 -1.2235 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3634 0.5248 0.8836 31 1 1.7144 1.9502 -0.8962 32 1 3.1501 1.4199 0.0126 33 1 0.4562 2.1842 1.2276 34 1 1.8918 1.6539 2.1365 35 1 3.8355 3.0917 2.3375 36 1 4.6924 5.4001 2.3292 37 1 3.3984 7.1898 1.2403 38 1 1.2521 6.6692 0.1513 39 1 0.3997 4.3592 0.1516 40 1 2.9795 -0.3087 1.6045 41 1 1.3106 -0.8210 2.0121 42 1 3.1129 -2.6899 1.2536 43 1 1.4469 -2.7700 0.5978 44 1 3.3965 -3.8682 -1.1836 45 1 1.7340 -3.3960 -1.6094 46 1 2.7157 -4.4732 -3.7948 47 1 2.9958 -2.3821 -5.6724 48 1 4.6139 -3.0262 -5.3046 49 1 4.4197 -3.1507 -8.9803 50 1 1.2324 -1.1548 -1.8114 51 1 2.6799 -0.1080 -1.8355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751501672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:10 Heat of formation + Delta-G solvation = -26.170427 kcal Electronic energy + Delta-G solvation = -27628.465776 eV Core-core repulsion = 23912.592265 eV Total energy + Delta-G solvation = -3715.873512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.11848 -39.34359 -38.28900 -35.23586 -34.09963 -32.60051 -32.27214 -31.07454 -30.06741 -28.50691 -28.01695 -26.79004 -25.24857 -23.67575 -22.76108 -22.44302 -21.44845 -20.83433 -19.59316 -18.87774 -16.98949 -16.97734 -15.96306 -15.90197 -15.52777 -15.48961 -15.39937 -14.84018 -14.61870 -14.26795 -14.09994 -13.77225 -13.55671 -13.47901 -13.37066 -12.99408 -12.83652 -12.63363 -12.31407 -12.20598 -12.12410 -11.89659 -11.78334 -11.69951 -11.35904 -11.30107 -11.12880 -10.98850 -10.93903 -10.85740 -10.58690 -10.45815 -10.45708 -10.30001 -9.38791 -9.10953 -8.96149 -8.83612 -8.72427 -8.24359 -7.83726 -6.16046 -4.22973 1.17373 1.21194 3.24065 3.30139 3.32626 3.42261 3.59152 3.81700 4.26182 4.37489 4.48200 4.51661 4.61515 4.71298 4.79163 4.84913 4.93572 5.07781 5.19669 5.19956 5.22557 5.28428 5.32649 5.36218 5.41222 5.42021 5.47166 5.56693 5.60690 5.62343 5.70695 5.75669 5.82394 5.86514 5.87485 5.94472 5.99539 6.04472 6.16053 6.27206 6.29323 6.32629 6.46372 6.48566 6.82727 7.00346 7.01460 7.34100 7.47623 7.53715 7.68882 7.98218 8.65660 8.80323 9.15103 9.43881 10.94128 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002075 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.882062 B =13493.578869 C =14528.556910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.096 4.096 4 C -0.082 4.082 5 C -0.077 4.077 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.112 4.112 12 C 0.032 3.968 13 N -0.495 5.495 14 C 0.026 3.974 15 C 0.497 3.503 16 O -0.539 6.539 17 N -0.716 5.716 18 C 0.252 3.748 19 C -0.543 4.543 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.051 3.949 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.389 0.611 47 H 0.025 0.975 48 H 0.026 0.974 49 H 0.266 0.734 50 H 0.041 0.959 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 11.239 23.442 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.077 4.077 6 C -0.136 4.136 7 C -0.137 4.137 8 C -0.147 4.147 9 C -0.137 4.137 10 C -0.137 4.137 11 C -0.150 4.150 12 C -0.095 4.095 13 N -0.219 5.219 14 C -0.106 4.106 15 C 0.281 3.719 16 O -0.416 6.416 17 N -0.365 5.365 18 C 0.131 3.869 19 C -0.581 4.581 20 H 0.081 0.919 21 C -0.141 4.141 22 N -0.523 5.523 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.077 4.077 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.074 0.926 46 H 0.221 0.779 47 H 0.043 0.957 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.059 0.941 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.608 12.244 23.076 26.946 hybrid contribution -1.140 -1.474 -0.820 2.036 sum -7.748 10.771 22.256 25.911 Atomic orbital electron populations 1.21964 0.94383 1.01563 1.01904 1.21470 0.95175 0.95317 0.95401 1.21608 1.01177 0.93367 0.97177 1.20734 1.00751 0.91177 0.99293 1.19981 0.94877 0.95668 0.97153 1.21084 0.95868 0.96642 0.99964 1.21153 0.99710 0.93191 0.99625 1.21132 0.95436 0.99227 0.98920 1.21145 0.96405 0.96656 0.99511 1.21069 1.00098 0.92769 0.99735 1.22600 1.01029 0.94752 0.96579 1.23265 0.98319 0.97104 0.90858 1.64685 1.51186 1.04950 1.01124 1.22250 1.00679 0.94653 0.92998 1.20289 0.80080 0.85484 0.86053 1.90649 1.44655 1.22502 1.83833 1.46455 1.62235 1.16885 1.10940 1.19070 0.95611 0.96472 0.75745 1.21233 1.42778 1.00286 0.93849 0.91939 1.24960 0.94733 0.96296 0.98092 1.69982 1.40907 1.26152 1.15218 0.86416 0.78046 0.82140 0.80304 1.20488 1.20990 1.19760 1.23072 0.95541 0.93503 0.95539 0.92408 0.92924 0.92282 0.91682 0.91079 0.90885 0.90917 0.86111 0.86229 0.86352 0.86257 0.86191 0.90582 0.91196 0.90155 0.93986 0.88253 0.92645 0.77877 0.95677 0.95565 0.92456 0.94106 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.85 37.16 0.29 -0.99 16 2 C -0.07 -0.77 0.70 -153.15 -0.11 -0.88 16 3 C -0.10 -0.99 3.92 -26.74 -0.10 -1.10 16 4 C -0.08 -0.69 4.79 -27.88 -0.13 -0.83 16 5 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 6 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 7 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 8 C -0.13 -1.12 10.05 -39.58 -0.40 -1.51 16 9 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 10 C -0.12 -1.10 9.70 -39.59 -0.38 -1.49 16 11 C -0.11 -1.05 5.15 -24.87 -0.13 -1.17 16 12 C 0.03 0.35 6.56 -1.90 -0.01 0.33 16 13 N -0.50 -7.17 5.12 -231.70 -1.19 -8.36 16 14 C 0.03 0.38 5.30 -4.97 -0.03 0.36 16 15 C 0.50 10.04 7.44 -10.99 -0.08 9.96 16 16 O -0.54 -13.05 14.53 5.55 0.08 -12.96 16 17 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 18 C 0.25 6.74 5.43 -5.19 -0.03 6.72 16 19 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 20 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 23 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.05 0.74 4.72 -2.63 -0.01 0.73 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 6.46 -51.93 -0.34 0.11 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.07 0.56 6.41 -51.93 -0.33 0.23 16 34 H 0.07 0.56 7.19 -51.93 -0.37 0.19 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 41 H 0.07 0.53 7.85 -51.93 -0.41 0.13 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.41 7.95 -51.93 -0.41 0.00 16 44 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 0.72 8.01 -51.92 -0.42 0.30 16 46 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 47 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.04 0.62 7.26 -51.93 -0.38 0.24 16 51 H 0.10 1.71 6.58 -51.93 -0.34 1.37 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -32.69 405.70 -11.64 -44.34 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.77 Total: 5.06 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.26 Total: -9.01 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.79 Total: -49.46 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.69 -11.64 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751501672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.167 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds