Wall clock time and date at job start Tue Mar 31 2020 16:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 110.27687 * 2 1 4 4 C 1.52999 * 109.47247 * 59.29403 * 3 2 1 5 5 C 1.50707 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99618 * 269.72845 * 5 4 3 7 7 C 1.38240 * 119.99587 * 179.77130 * 6 5 4 8 8 C 1.38238 * 119.99891 * 0.49787 * 7 6 5 9 9 C 1.38236 * 119.99902 * 359.75388 * 8 7 6 10 10 C 1.38230 * 119.99989 * 90.00046 * 5 4 3 11 11 C 1.54601 * 110.30605 * 122.08584 * 2 1 3 12 12 C 1.54941 * 102.91892 * 97.05482 * 11 2 1 13 13 N 1.48532 * 103.22613 * 37.41773 * 12 11 2 14 14 C 1.46904 * 110.99707 * 200.27439 * 13 12 11 15 15 C 1.50697 * 109.46878 * 176.42391 * 14 13 12 16 16 O 1.21283 * 120.00175 * 6.00696 * 15 14 13 17 17 N 1.34774 * 120.00010 * 186.00233 * 15 14 13 18 18 C 1.46501 * 120.00205 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47197 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00156 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99929 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00318 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47374 * 90.00026 * 23 21 19 25 25 H 1.48506 * 109.47169 * 210.00096 * 23 21 19 26 26 H 1.48500 * 109.47086 * 329.99973 * 23 21 19 27 27 C 1.48127 * 105.82298 * 320.73227 * 13 12 11 28 28 H 1.09001 * 109.46844 * 60.70192 * 1 2 3 29 29 H 1.08996 * 109.47610 * 180.70239 * 1 2 3 30 30 H 1.09005 * 109.47490 * 300.70799 * 1 2 3 31 31 H 1.09003 * 109.47005 * 299.29699 * 3 2 1 32 32 H 1.09005 * 109.47411 * 179.29955 * 3 2 1 33 33 H 1.08997 * 109.47491 * 299.99760 * 4 3 2 34 34 H 1.08993 * 109.47266 * 60.00609 * 4 3 2 35 35 H 1.07997 * 120.00329 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.99701 * 180.23302 * 7 6 5 37 37 H 1.08002 * 119.99614 * 179.72478 * 8 7 6 38 38 H 1.07996 * 119.99631 * 179.97438 * 9 8 7 39 39 H 1.07996 * 120.00476 * 0.02562 * 10 5 4 40 40 H 1.08996 * 110.72627 * 215.41636 * 11 2 1 41 41 H 1.09003 * 110.71975 * 338.52377 * 11 2 1 42 42 H 1.09004 * 110.66205 * 155.84824 * 12 11 2 43 43 H 1.08992 * 110.66738 * 278.81173 * 12 11 2 44 44 H 1.08994 * 109.47353 * 296.42742 * 14 13 12 45 45 H 1.09009 * 109.46893 * 56.42654 * 14 13 12 46 46 H 0.97004 * 119.99716 * 0.02562 * 17 15 14 47 47 H 1.08997 * 109.46972 * 299.99649 * 18 17 15 48 48 H 1.09005 * 109.46884 * 60.00280 * 18 17 15 49 49 H 0.97005 * 119.99750 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.99155 * 266.08054 * 27 13 12 51 51 H 1.08997 * 109.94689 * 144.71668 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4351 0.0000 4 6 1.5460 2.1688 1.2402 5 6 2.0678 3.5827 1.2398 6 6 3.2702 3.8757 1.8557 7 6 3.7512 5.1718 1.8513 8 6 3.0247 6.1765 1.2399 9 6 1.8198 5.8842 0.6286 10 6 1.3414 4.5873 0.6285 11 6 2.0665 -0.7702 1.2285 12 6 2.3607 -2.1784 0.6530 13 7 2.8841 -1.8876 -0.7062 14 6 2.7723 -3.0658 -1.5765 15 6 3.2301 -2.7083 -2.9671 16 8 3.7133 -1.6174 -3.1848 17 7 3.1025 -3.6008 -3.9689 18 6 3.5480 -3.2535 -5.3206 19 6 3.2966 -4.4156 -6.2465 20 1 2.8492 -5.3221 -5.8661 21 6 3.6366 -4.3213 -7.5793 22 7 4.1808 -3.2172 -8.0425 23 14 3.3243 -5.7615 -8.7272 24 1 1.9686 -5.6369 -9.3203 25 1 4.3404 -5.7607 -9.8102 26 1 3.4157 -7.0319 -7.9636 27 6 2.0645 -0.7673 -1.2235 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3634 0.5248 0.8836 31 1 1.7144 1.9502 -0.8962 32 1 3.1501 1.4199 0.0126 33 1 0.4562 2.1842 1.2276 34 1 1.8918 1.6539 2.1365 35 1 3.8355 3.0917 2.3375 36 1 4.6924 5.4001 2.3292 37 1 3.3984 7.1898 1.2403 38 1 1.2521 6.6692 0.1513 39 1 0.3997 4.3592 0.1516 40 1 2.9795 -0.3087 1.6045 41 1 1.3106 -0.8210 2.0121 42 1 3.1129 -2.6899 1.2536 43 1 1.4469 -2.7700 0.5978 44 1 3.3965 -3.8682 -1.1836 45 1 1.7340 -3.3960 -1.6094 46 1 2.7157 -4.4732 -3.7948 47 1 2.9958 -2.3821 -5.6724 48 1 4.6139 -3.0262 -5.3046 49 1 4.4197 -3.1507 -8.9803 50 1 1.2324 -1.1548 -1.8114 51 1 2.6799 -0.1080 -1.8355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751501672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:09 Heat of formation + Delta-G solvation = -46.816526 kcal Electronic energy + Delta-G solvation = -27629.361058 eV Core-core repulsion = 23912.592265 eV Total energy + Delta-G solvation = -3716.768794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19941 -40.26896 -39.60210 -36.34371 -35.92984 -34.36250 -33.38897 -31.73482 -31.06436 -29.73925 -29.19710 -28.13203 -26.40922 -24.71752 -24.17139 -23.42194 -22.37805 -21.72208 -21.28051 -19.79816 -18.85072 -17.64278 -17.42717 -17.24096 -16.92819 -16.53131 -16.25285 -16.22734 -15.91544 -15.64202 -15.05643 -14.86212 -14.73163 -14.37172 -14.20775 -14.20368 -14.02711 -13.89866 -13.65209 -13.36280 -13.23030 -13.11027 -12.94384 -12.85417 -12.71490 -12.56459 -12.28684 -12.21729 -12.06250 -11.95890 -11.69267 -11.50611 -11.46611 -11.28720 -11.25711 -10.81675 -10.65663 -9.83515 -9.79058 -9.53199 -9.32318 -8.30704 -6.47783 0.48938 0.53022 1.41616 1.44391 1.55700 1.78097 2.27965 2.48921 2.90226 3.03919 3.12932 3.59435 3.66257 3.81729 3.98084 4.01271 4.05753 4.19559 4.28433 4.30820 4.35116 4.39444 4.40681 4.46218 4.51570 4.63495 4.67365 4.69665 4.76624 4.80092 4.86263 4.96347 5.05432 5.09167 5.10916 5.16538 5.18955 5.21989 5.22716 5.24375 5.28849 5.43726 5.47748 5.51915 5.61758 5.65616 5.67796 5.78737 5.83283 5.92359 6.05056 6.17399 6.63563 6.93338 7.21998 7.51766 8.81576 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002075 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.882062 B =13493.578869 C =14528.556910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.089 4.089 4 C -0.071 4.071 5 C -0.091 4.091 6 C -0.132 4.132 7 C -0.130 4.130 8 C -0.139 4.139 9 C -0.130 4.130 10 C -0.133 4.133 11 C -0.105 4.105 12 C 0.033 3.967 13 N -0.521 5.521 14 C 0.040 3.960 15 C 0.491 3.509 16 O -0.586 6.586 17 N -0.710 5.710 18 C 0.270 3.730 19 C -0.556 4.556 20 H 0.085 0.915 21 C 0.001 3.999 22 N -0.932 5.932 23 Si 0.987 3.013 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.254 1.254 27 C 0.053 3.947 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.408 0.592 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.269 0.731 50 H 0.028 0.972 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 9.282 25.646 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.091 4.091 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.156 4.156 9 C -0.148 4.148 10 C -0.151 4.151 11 C -0.143 4.143 12 C -0.093 4.093 13 N -0.245 5.245 14 C -0.091 4.091 15 C 0.278 3.722 16 O -0.466 6.466 17 N -0.361 5.361 18 C 0.147 3.853 19 C -0.594 4.594 20 H 0.103 0.897 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.809 3.191 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.178 1.178 27 C -0.075 4.075 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.145 0.855 45 H 0.102 0.898 46 H 0.243 0.757 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.077 0.923 50 H 0.046 0.954 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.295 10.256 25.335 28.563 hybrid contribution -0.561 -0.762 -1.501 1.774 sum -8.856 9.494 23.834 27.141 Atomic orbital electron populations 1.21937 0.92787 1.02125 1.02536 1.21410 0.96284 0.94692 0.94255 1.21492 0.99755 0.93756 0.97686 1.20655 1.01333 0.90426 0.98386 1.20174 0.95214 0.96246 0.97499 1.21322 0.96095 0.97285 1.00306 1.21449 1.00456 0.93172 0.99694 1.21443 0.95414 1.00205 0.98580 1.21440 0.96784 0.97036 0.99549 1.21311 1.00698 0.93162 0.99970 1.22618 1.01758 0.93566 0.96329 1.23391 0.99386 0.98186 0.88378 1.64620 1.52306 1.04777 1.02828 1.22181 1.02487 0.95447 0.88969 1.21393 0.78568 0.84297 0.87924 1.90639 1.46502 1.24568 1.84916 1.46195 1.62497 1.18177 1.09271 1.18482 0.92527 0.95461 0.78867 1.21628 1.42737 1.00792 0.94228 0.89715 1.26113 0.94048 0.99468 1.00187 1.70152 1.42128 1.28902 1.15850 0.85130 0.77987 0.78406 0.77529 1.19543 1.20961 1.17800 1.22925 0.94219 0.93529 0.96798 0.93476 0.92410 0.89938 0.93507 0.93309 0.89626 0.89600 0.85254 0.84631 0.84540 0.84671 0.85328 0.90831 0.88208 0.88787 0.92210 0.85487 0.89808 0.75658 0.99821 0.99780 0.92254 0.95384 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.85 71.98 0.57 -1.66 16 2 C -0.07 -1.33 0.70 -51.30 -0.04 -1.37 16 3 C -0.09 -1.89 3.92 30.59 0.12 -1.77 16 4 C -0.07 -1.11 4.79 29.85 0.14 -0.97 16 5 C -0.09 -1.70 5.13 -19.86 -0.10 -1.80 16 6 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 7 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 8 C -0.14 -2.31 10.05 22.27 0.22 -2.08 16 9 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 10 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 11 C -0.11 -1.68 5.15 31.80 0.16 -1.52 16 12 C 0.03 0.61 6.56 86.65 0.57 1.18 16 13 N -0.52 -14.66 5.12 -886.95 -4.54 -19.20 16 14 C 0.04 1.13 5.30 85.56 0.45 1.58 16 15 C 0.49 20.38 7.44 87.66 0.65 21.03 16 16 O -0.59 -30.25 14.53 -3.04 -0.04 -30.30 16 17 N -0.71 -30.79 5.55 -466.79 -2.59 -33.38 16 18 C 0.27 15.20 5.43 85.63 0.46 15.66 16 19 C -0.56 -30.72 9.28 25.60 0.24 -30.48 16 20 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 21 C 0.00 0.07 5.46 84.65 0.46 0.54 16 22 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 23 Si 0.99 42.71 29.54 68.60 2.03 44.74 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 27 C 0.05 1.60 4.72 86.40 0.41 2.00 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.97 6.46 -2.38 -0.02 0.96 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.23 8.13 -2.38 -0.02 1.21 16 33 H 0.09 1.13 6.41 -2.39 -0.02 1.12 16 34 H 0.09 1.13 7.19 -2.39 -0.02 1.11 16 35 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.07 1.24 7.73 -2.39 -0.02 1.22 16 41 H 0.10 1.07 7.85 -2.39 -0.02 1.05 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 0.92 7.95 -2.39 -0.02 0.90 16 44 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.08 1.92 8.01 -2.38 -0.02 1.90 16 46 H 0.41 14.40 8.32 -92.70 -0.77 13.63 16 47 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 48 H -0.02 -1.01 8.14 -2.38 -0.02 -1.02 16 49 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 50 H 0.03 0.88 7.26 -2.39 -0.02 0.86 16 51 H 0.05 1.95 6.58 -2.39 -0.02 1.93 16 Total: -1.00 -76.26 405.70 0.46 -75.80 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.13 Total: 27.38 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.20 Total: -8.14 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -6.85 Total: -109.47 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.04 Total: -30.30 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -76.26 0.46 -75.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751501672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.981 kcal (2) G-P(sol) polarization free energy of solvation -76.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds