Wall clock time and date at job start Tue Mar 31 2020 16:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 110.28890 * 2 1 4 4 C 1.52993 * 109.47212 * 299.32206 * 3 2 1 5 5 C 1.50699 * 109.47314 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00273 * 269.73162 * 5 4 3 7 7 C 1.38238 * 119.99751 * 179.74454 * 6 5 4 8 8 C 1.38230 * 120.00195 * 0.54689 * 7 6 5 9 9 C 1.38235 * 120.00108 * 359.70515 * 8 7 6 10 10 C 1.38237 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.54257 * 110.32449 * 237.86767 * 2 1 3 12 12 C 1.54377 * 105.06188 * 241.10815 * 11 2 1 13 13 N 1.48556 * 104.59759 * 23.85537 * 12 11 2 14 14 C 1.46898 * 111.00275 * 200.96056 * 13 12 11 15 15 C 1.50701 * 109.47314 * 176.46826 * 14 13 12 16 16 O 1.21285 * 119.99691 * 6.04020 * 15 14 13 17 17 N 1.34775 * 120.00358 * 186.03308 * 15 14 13 18 18 C 1.46494 * 120.00204 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.47198 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00146 * 359.72932 * 19 18 17 21 21 C 1.37880 * 119.99947 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99713 * 179.72521 * 21 19 18 23 23 Si 1.86798 * 120.00080 * 359.72425 * 21 19 18 24 24 H 1.48507 * 109.46968 * 90.00240 * 23 21 19 25 25 H 1.48497 * 109.47217 * 209.99621 * 23 21 19 26 26 H 1.48498 * 109.47190 * 330.00209 * 23 21 19 27 27 C 1.48565 * 104.22027 * 320.51699 * 13 12 11 28 28 H 1.08998 * 109.47565 * 180.67244 * 1 2 3 29 29 H 1.09000 * 109.47310 * 300.67746 * 1 2 3 30 30 H 1.09004 * 109.46414 * 60.67245 * 1 2 3 31 31 H 1.09005 * 109.47232 * 59.32263 * 3 2 1 32 32 H 1.09000 * 109.47107 * 179.31924 * 3 2 1 33 33 H 1.08994 * 109.47531 * 300.00131 * 4 3 2 34 34 H 1.09004 * 109.47010 * 60.00205 * 4 3 2 35 35 H 1.07997 * 119.99560 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.99413 * 180.27474 * 7 6 5 37 37 H 1.07999 * 120.00081 * 179.72437 * 8 7 6 38 38 H 1.08000 * 120.00358 * 180.02562 * 9 8 7 39 39 H 1.08004 * 120.00008 * 179.97438 * 10 9 8 40 40 H 1.08995 * 110.32041 * 122.21163 * 11 2 1 41 41 H 1.08994 * 110.41055 * 0.05015 * 11 2 1 42 42 H 1.09002 * 110.41383 * 265.07578 * 12 11 2 43 43 H 1.09001 * 110.41385 * 142.63457 * 12 11 2 44 44 H 1.09003 * 109.46908 * 56.47082 * 14 13 12 45 45 H 1.08996 * 109.47227 * 296.47469 * 14 13 12 46 46 H 0.97001 * 119.99589 * 0.02562 * 17 15 14 47 47 H 1.08997 * 109.47378 * 60.00034 * 18 17 15 48 48 H 1.09001 * 109.47255 * 300.00168 * 18 17 15 49 49 H 0.97007 * 119.99824 * 179.97438 * 22 21 19 50 50 H 1.08996 * 110.41386 * 158.25889 * 27 13 12 51 51 H 1.09000 * 110.41433 * 280.70397 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 1.5748 2.1583 -1.2576 5 6 2.0969 3.5720 -1.2573 6 6 1.3545 4.5829 -0.6760 7 6 1.8359 5.8787 -0.6711 8 6 3.0543 6.1657 -1.2575 9 6 3.7943 5.1557 -1.8434 10 6 3.3155 3.8589 -1.8434 11 6 2.0658 -0.7694 -1.2250 12 6 2.8806 -1.9417 -0.6375 13 7 2.3147 -2.1475 0.7206 14 6 3.2647 -2.8611 1.5843 15 6 2.6929 -2.9746 2.9739 16 8 1.5587 -2.6061 3.1949 17 7 3.4416 -3.4859 3.9711 18 6 2.8854 -3.5968 5.3219 19 6 3.9179 -4.1945 6.2427 20 1 4.8895 -4.4688 5.8591 21 6 3.6203 -4.3959 7.5739 22 7 4.5194 -4.9225 8.3763 23 14 1.9401 -3.9208 8.2376 24 1 1.0139 -5.0749 8.1123 25 1 2.0627 -3.5375 9.6670 26 1 1.4077 -2.7724 7.4610 27 6 2.0661 -0.7722 1.2246 28 1 -0.3634 -1.0275 0.0121 29 1 -0.3634 0.5243 0.8838 30 1 -0.3632 0.5034 -0.8960 31 1 1.6947 1.9577 0.8839 32 1 3.1504 1.4195 0.0122 33 1 1.9406 1.6358 -2.1415 34 1 0.4850 2.1739 -1.2698 35 1 0.4002 4.3595 -0.2224 36 1 1.2578 6.6677 -0.2130 37 1 3.4283 7.1788 -1.2576 38 1 4.7464 5.3798 -2.3012 39 1 3.8935 3.0699 -2.3016 40 1 2.7082 -0.1252 -1.8252 41 1 1.2400 -1.1469 -1.8277 42 1 3.9360 -1.6767 -0.5733 43 1 2.7490 -2.8378 -1.2439 44 1 4.2051 -2.3110 1.6222 45 1 3.4432 -3.8583 1.1821 46 1 4.3488 -3.7804 3.7944 47 1 2.0034 -4.2368 5.3002 48 1 2.6071 -2.6066 5.6827 49 1 4.3102 -5.0639 9.3129 50 1 1.3212 -0.7877 2.0202 51 1 2.9940 -0.3242 1.5802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751501681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:12 Heat of formation + Delta-G solvation = -21.933947 kcal Electronic energy + Delta-G solvation = -27672.954147 eV Core-core repulsion = 23957.264343 eV Total energy + Delta-G solvation = -3715.689804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18577 -39.43937 -38.43162 -35.34510 -34.22740 -32.67909 -32.31963 -31.16888 -30.16564 -28.72779 -28.29067 -26.91566 -25.36874 -23.78451 -22.85042 -22.13915 -21.49567 -20.83223 -19.79991 -18.86326 -17.22543 -17.07920 -16.19788 -15.99400 -15.72114 -15.60712 -15.34937 -14.85862 -14.74201 -14.17881 -14.05164 -13.87511 -13.79547 -13.64356 -13.42475 -13.16659 -12.93098 -12.75146 -12.43410 -12.39758 -12.17305 -12.07276 -12.00863 -11.62986 -11.44785 -11.27244 -11.18828 -11.08292 -10.99398 -10.74341 -10.56343 -10.55519 -10.48398 -9.97168 -9.49634 -9.20566 -9.13048 -8.93726 -8.77756 -8.40097 -8.10901 -6.21725 -4.23888 1.07789 1.11592 3.24541 3.28057 3.33443 3.42055 3.49470 3.69846 4.19839 4.33411 4.44704 4.50162 4.50401 4.62955 4.71578 4.81626 4.86602 4.96477 5.08173 5.13532 5.19894 5.22507 5.25043 5.30277 5.33642 5.38419 5.44415 5.50165 5.52718 5.59667 5.64740 5.69761 5.76081 5.80949 5.87229 5.91799 5.97963 6.04794 6.06294 6.18658 6.23282 6.31960 6.34564 6.42404 6.73214 6.78117 6.88298 6.97607 7.07859 7.25316 7.40050 8.14789 8.52640 8.75611 8.96812 9.38615 10.90200 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.002175 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.818073 B =12871.665156 C =13688.487717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.099 4.099 4 C -0.083 4.083 5 C -0.077 4.077 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.115 4.115 12 C 0.030 3.970 13 N -0.489 5.489 14 C 0.024 3.976 15 C 0.500 3.500 16 O -0.541 6.541 17 N -0.708 5.708 18 C 0.222 3.778 19 C -0.544 4.544 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.893 5.893 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.261 1.261 27 C 0.041 3.959 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.395 0.605 47 H 0.020 0.980 48 H 0.024 0.976 49 H 0.267 0.733 50 H 0.102 0.898 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 17.614 -24.436 30.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.120 4.120 5 C -0.077 4.077 6 C -0.136 4.136 7 C -0.137 4.137 8 C -0.147 4.147 9 C -0.137 4.137 10 C -0.137 4.137 11 C -0.153 4.153 12 C -0.098 4.098 13 N -0.212 5.212 14 C -0.107 4.107 15 C 0.284 3.716 16 O -0.419 6.419 17 N -0.358 5.358 18 C 0.100 3.900 19 C -0.581 4.581 20 H 0.097 0.903 21 C -0.127 4.127 22 N -0.530 5.530 23 Si 0.704 3.296 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.086 4.086 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.229 0.771 47 H 0.038 0.962 48 H 0.042 0.958 49 H 0.077 0.923 50 H 0.120 0.880 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.288 17.470 -24.047 30.031 hybrid contribution 0.645 0.440 0.549 0.955 sum -3.644 17.910 -23.498 29.769 Atomic orbital electron populations 1.21862 0.93631 1.02522 1.01121 1.21308 0.96419 0.93853 0.94855 1.21633 1.00440 0.94174 0.97475 1.20740 1.01214 0.91088 0.98967 1.19991 0.94701 0.95702 0.97354 1.21097 1.00053 0.92721 0.99751 1.21163 0.96295 0.96707 0.99490 1.21139 0.95304 0.99226 0.99016 1.21151 0.99756 0.93138 0.99668 1.21070 0.95853 0.96661 1.00137 1.22472 0.99677 0.96071 0.97091 1.23166 0.96694 0.98842 0.91134 1.65218 1.39122 1.15803 1.01093 1.22215 0.94446 1.01273 0.92806 1.20327 0.86446 0.78644 0.86142 1.90627 1.18457 1.49121 1.83714 1.46174 1.17051 1.62235 1.10299 1.19460 0.95177 0.96862 0.78490 1.21101 1.00627 1.42882 0.93530 0.90286 1.24806 0.97279 0.94058 0.96548 1.69884 1.34371 1.43207 1.05524 0.86805 0.84320 0.80055 0.78440 1.19828 1.20920 1.18515 1.23355 1.00677 0.87168 0.97446 0.91692 0.92716 0.92894 0.91534 0.91946 0.90794 0.90556 0.86083 0.86189 0.86308 0.86227 0.86210 0.91258 0.90876 0.94015 0.90168 0.92343 0.87990 0.77134 0.96181 0.95829 0.92271 0.87968 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 7.87 37.16 0.29 -1.08 16 2 C -0.06 -0.65 0.76 -153.13 -0.12 -0.77 16 3 C -0.10 -0.90 4.04 -26.74 -0.11 -1.01 16 4 C -0.08 -0.64 4.79 -27.89 -0.13 -0.77 16 5 C -0.08 -0.66 5.13 -104.62 -0.54 -1.20 16 6 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 7 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 8 C -0.13 -1.00 10.05 -39.59 -0.40 -1.40 16 9 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 10 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 11 C -0.12 -1.03 5.75 -25.35 -0.15 -1.18 16 12 C 0.03 0.30 6.49 -2.19 -0.01 0.29 16 13 N -0.49 -6.72 5.18 -231.41 -1.20 -7.92 16 14 C 0.02 0.34 5.39 -4.98 -0.03 0.31 16 15 C 0.50 9.54 7.48 -10.99 -0.08 9.46 16 16 O -0.54 -12.24 14.43 5.55 0.08 -12.16 16 17 N -0.71 -14.38 5.55 -61.48 -0.34 -14.72 16 18 C 0.22 5.50 4.50 -5.20 -0.02 5.48 16 19 C -0.54 -14.98 9.83 -34.44 -0.34 -15.31 16 20 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 21 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 22 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 23 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 27 C 0.04 0.56 4.67 -2.18 -0.01 0.55 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.07 0.51 6.54 -51.93 -0.34 0.18 16 34 H 0.08 0.56 6.47 -51.93 -0.34 0.23 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.07 0.52 6.50 -51.93 -0.34 0.18 16 41 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 42 H 0.04 0.40 7.92 -51.93 -0.41 -0.01 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 45 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.40 7.03 8.32 -40.82 -0.34 6.69 16 47 H 0.02 0.52 7.58 -51.93 -0.39 0.13 16 48 H 0.02 0.62 7.19 -51.93 -0.37 0.25 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.10 1.72 6.25 -51.93 -0.32 1.40 16 51 H 0.04 0.52 7.67 -51.93 -0.40 0.12 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -32.46 401.02 -11.25 -43.71 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.64 Total: 3.89 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.30 Total: -9.97 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.77 Total: -48.44 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.46 -11.25 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751501681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.780 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds