Wall clock time and date at job start Tue Mar 31 2020 16:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 110.28890 * 2 1 4 4 C 1.52993 * 109.47212 * 299.32206 * 3 2 1 5 5 C 1.50699 * 109.47314 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00273 * 269.73162 * 5 4 3 7 7 C 1.38238 * 119.99751 * 179.74454 * 6 5 4 8 8 C 1.38230 * 120.00195 * 0.54689 * 7 6 5 9 9 C 1.38235 * 120.00108 * 359.70515 * 8 7 6 10 10 C 1.38237 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.54257 * 110.32449 * 237.86767 * 2 1 3 12 12 C 1.54377 * 105.06188 * 241.10815 * 11 2 1 13 13 N 1.48556 * 104.59759 * 23.85537 * 12 11 2 14 14 C 1.46898 * 111.00275 * 200.96056 * 13 12 11 15 15 C 1.50701 * 109.47314 * 176.46826 * 14 13 12 16 16 O 1.21285 * 119.99691 * 6.04020 * 15 14 13 17 17 N 1.34775 * 120.00358 * 186.03308 * 15 14 13 18 18 C 1.46494 * 120.00204 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.47198 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00146 * 359.72932 * 19 18 17 21 21 C 1.37880 * 119.99947 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99713 * 179.72521 * 21 19 18 23 23 Si 1.86798 * 120.00080 * 359.72425 * 21 19 18 24 24 H 1.48507 * 109.46968 * 90.00240 * 23 21 19 25 25 H 1.48497 * 109.47217 * 209.99621 * 23 21 19 26 26 H 1.48498 * 109.47190 * 330.00209 * 23 21 19 27 27 C 1.48565 * 104.22027 * 320.51699 * 13 12 11 28 28 H 1.08998 * 109.47565 * 180.67244 * 1 2 3 29 29 H 1.09000 * 109.47310 * 300.67746 * 1 2 3 30 30 H 1.09004 * 109.46414 * 60.67245 * 1 2 3 31 31 H 1.09005 * 109.47232 * 59.32263 * 3 2 1 32 32 H 1.09000 * 109.47107 * 179.31924 * 3 2 1 33 33 H 1.08994 * 109.47531 * 300.00131 * 4 3 2 34 34 H 1.09004 * 109.47010 * 60.00205 * 4 3 2 35 35 H 1.07997 * 119.99560 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.99413 * 180.27474 * 7 6 5 37 37 H 1.07999 * 120.00081 * 179.72437 * 8 7 6 38 38 H 1.08000 * 120.00358 * 180.02562 * 9 8 7 39 39 H 1.08004 * 120.00008 * 179.97438 * 10 9 8 40 40 H 1.08995 * 110.32041 * 122.21163 * 11 2 1 41 41 H 1.08994 * 110.41055 * 0.05015 * 11 2 1 42 42 H 1.09002 * 110.41383 * 265.07578 * 12 11 2 43 43 H 1.09001 * 110.41385 * 142.63457 * 12 11 2 44 44 H 1.09003 * 109.46908 * 56.47082 * 14 13 12 45 45 H 1.08996 * 109.47227 * 296.47469 * 14 13 12 46 46 H 0.97001 * 119.99589 * 0.02562 * 17 15 14 47 47 H 1.08997 * 109.47378 * 60.00034 * 18 17 15 48 48 H 1.09001 * 109.47255 * 300.00168 * 18 17 15 49 49 H 0.97007 * 119.99824 * 179.97438 * 22 21 19 50 50 H 1.08996 * 110.41386 * 158.25889 * 27 13 12 51 51 H 1.09000 * 110.41433 * 280.70397 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 1.5748 2.1583 -1.2576 5 6 2.0969 3.5720 -1.2573 6 6 1.3545 4.5829 -0.6760 7 6 1.8359 5.8787 -0.6711 8 6 3.0543 6.1657 -1.2575 9 6 3.7943 5.1557 -1.8434 10 6 3.3155 3.8589 -1.8434 11 6 2.0658 -0.7694 -1.2250 12 6 2.8806 -1.9417 -0.6375 13 7 2.3147 -2.1475 0.7206 14 6 3.2647 -2.8611 1.5843 15 6 2.6929 -2.9746 2.9739 16 8 1.5587 -2.6061 3.1949 17 7 3.4416 -3.4859 3.9711 18 6 2.8854 -3.5968 5.3219 19 6 3.9179 -4.1945 6.2427 20 1 4.8895 -4.4688 5.8591 21 6 3.6203 -4.3959 7.5739 22 7 4.5194 -4.9225 8.3763 23 14 1.9401 -3.9208 8.2376 24 1 1.0139 -5.0749 8.1123 25 1 2.0627 -3.5375 9.6670 26 1 1.4077 -2.7724 7.4610 27 6 2.0661 -0.7722 1.2246 28 1 -0.3634 -1.0275 0.0121 29 1 -0.3634 0.5243 0.8838 30 1 -0.3632 0.5034 -0.8960 31 1 1.6947 1.9577 0.8839 32 1 3.1504 1.4195 0.0122 33 1 1.9406 1.6358 -2.1415 34 1 0.4850 2.1739 -1.2698 35 1 0.4002 4.3595 -0.2224 36 1 1.2578 6.6677 -0.2130 37 1 3.4283 7.1788 -1.2576 38 1 4.7464 5.3798 -2.3012 39 1 3.8935 3.0699 -2.3016 40 1 2.7082 -0.1252 -1.8252 41 1 1.2400 -1.1469 -1.8277 42 1 3.9360 -1.6767 -0.5733 43 1 2.7490 -2.8378 -1.2439 44 1 4.2051 -2.3110 1.6222 45 1 3.4432 -3.8583 1.1821 46 1 4.3488 -3.7804 3.7944 47 1 2.0034 -4.2368 5.3002 48 1 2.6071 -2.6066 5.6827 49 1 4.3102 -5.0639 9.3129 50 1 1.3212 -0.7877 2.0202 51 1 2.9940 -0.3242 1.5802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751501681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:11 Heat of formation + Delta-G solvation = -42.223225 kcal Electronic energy + Delta-G solvation = -27673.833956 eV Core-core repulsion = 23957.264343 eV Total energy + Delta-G solvation = -3716.569613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19687 -40.29096 -39.61141 -36.37158 -35.94266 -34.42119 -33.39975 -31.73100 -31.16830 -30.12404 -29.26953 -28.10045 -26.41199 -24.61601 -23.87679 -23.41370 -22.38261 -21.71008 -21.34700 -19.71383 -19.10030 -17.72122 -17.63099 -17.25548 -16.88589 -16.42382 -16.36046 -16.05530 -16.01884 -15.63535 -15.05175 -14.88836 -14.72840 -14.60288 -14.32032 -14.27776 -14.18609 -14.02919 -13.74641 -13.42678 -13.22651 -13.16008 -13.04727 -12.76070 -12.74554 -12.38623 -12.24637 -12.06067 -11.95667 -11.87788 -11.74920 -11.67531 -11.41004 -11.29287 -11.24608 -10.93724 -10.69566 -9.93095 -9.78735 -9.54355 -9.38751 -8.41978 -6.48821 0.49112 0.53369 1.30743 1.32882 1.45531 1.73764 2.25872 2.33647 2.90227 2.93227 3.12453 3.59066 3.73546 3.79421 3.94932 4.00792 4.09509 4.20285 4.24601 4.30993 4.33114 4.35673 4.44596 4.47896 4.51712 4.64660 4.69965 4.70971 4.76660 4.78262 4.81230 4.87741 4.97072 5.01073 5.01672 5.10168 5.18663 5.20384 5.22947 5.24502 5.25304 5.29464 5.46910 5.51803 5.54309 5.61999 5.66397 5.79261 5.87380 5.98415 6.10105 6.17603 6.52129 6.85889 7.14404 7.43260 8.72670 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.002175 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.818073 B =12871.665156 C =13688.487717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C -0.091 4.091 4 C -0.074 4.074 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.131 4.131 8 C -0.139 4.139 9 C -0.129 4.129 10 C -0.130 4.130 11 C -0.109 4.109 12 C 0.030 3.970 13 N -0.510 5.510 14 C 0.035 3.965 15 C 0.497 3.503 16 O -0.579 6.579 17 N -0.709 5.709 18 C 0.235 3.765 19 C -0.547 4.547 20 H 0.060 0.940 21 C 0.026 3.974 22 N -0.930 5.930 23 Si 0.937 3.063 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.263 1.263 27 C 0.041 3.959 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.408 0.592 47 H 0.009 0.991 48 H 0.009 0.991 49 H 0.273 0.727 50 H 0.061 0.939 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 18.431 -26.802 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.111 4.111 5 C -0.090 4.090 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.097 4.097 13 N -0.234 5.234 14 C -0.096 4.096 15 C 0.284 3.716 16 O -0.459 6.459 17 N -0.359 5.359 18 C 0.111 3.889 19 C -0.584 4.584 20 H 0.078 0.922 21 C -0.174 4.174 22 N -0.569 5.569 23 Si 0.761 3.239 24 H -0.190 1.190 25 H -0.197 1.197 26 H -0.187 1.187 27 C -0.087 4.087 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.145 0.855 46 H 0.244 0.756 47 H 0.027 0.973 48 H 0.027 0.973 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.134 18.284 -26.446 32.415 hybrid contribution 0.649 0.202 1.265 1.436 sum -3.486 18.486 -25.181 31.431 Atomic orbital electron populations 1.21828 0.93842 1.01420 1.01723 1.21246 0.96182 0.94265 0.94070 1.21528 1.00226 0.93352 0.97783 1.20670 1.01347 0.90629 0.98481 1.20137 0.95077 0.96030 0.97708 1.21310 1.00567 0.93207 1.00166 1.21425 0.96759 0.97021 0.99650 1.21438 0.95256 1.00226 0.98732 1.21453 1.00510 0.93122 0.99581 1.21322 0.95909 0.97339 1.00181 1.22485 1.00112 0.95707 0.96403 1.23277 0.97474 0.99982 0.88999 1.65188 1.39980 1.15690 1.02586 1.22174 0.94869 1.03185 0.89367 1.21254 0.85769 0.76899 0.87645 1.90618 1.20326 1.50369 1.84605 1.46035 1.17880 1.62909 1.09110 1.19036 0.94065 0.95365 0.80431 1.21297 1.00472 1.42504 0.94173 0.92186 1.25604 1.00769 0.94074 0.97003 1.69981 1.36298 1.44471 1.06119 0.85857 0.80051 0.79796 0.78176 1.18992 1.19691 1.18698 1.23237 0.99377 0.88087 0.97958 0.93533 0.93911 0.90549 0.93060 0.92018 0.89380 0.90277 0.85629 0.84898 0.84660 0.84527 0.84832 0.89016 0.90197 0.92670 0.88928 0.90013 0.85525 0.75642 0.97307 0.97278 0.91824 0.92025 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 7.87 71.98 0.57 -2.04 16 2 C -0.06 -1.09 0.76 -51.29 -0.04 -1.13 16 3 C -0.09 -1.54 4.04 30.59 0.12 -1.42 16 4 C -0.07 -0.99 4.79 29.85 0.14 -0.85 16 5 C -0.09 -1.40 5.13 -19.86 -0.10 -1.50 16 6 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 7 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 8 C -0.14 -1.96 10.05 22.27 0.22 -1.74 16 9 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 10 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 11 C -0.11 -1.63 5.75 31.49 0.18 -1.45 16 12 C 0.03 0.52 6.49 86.45 0.56 1.08 16 13 N -0.51 -13.27 5.18 -886.04 -4.59 -17.86 16 14 C 0.04 0.92 5.39 85.56 0.46 1.39 16 15 C 0.50 18.85 7.48 87.66 0.66 19.51 16 16 O -0.58 -26.70 14.43 -3.05 -0.04 -26.75 16 17 N -0.71 -28.71 5.55 -466.80 -2.59 -31.30 16 18 C 0.23 11.75 4.50 85.63 0.39 12.14 16 19 C -0.55 -30.53 9.83 25.60 0.25 -30.28 16 20 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 21 C 0.03 1.48 5.47 84.66 0.46 1.94 16 22 N -0.93 -55.90 13.96 21.45 0.30 -55.60 16 23 Si 0.94 44.78 27.47 68.60 1.88 46.67 16 24 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 27 C 0.04 1.12 4.67 86.45 0.40 1.53 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.13 6.56 -2.38 -0.02 1.12 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.09 0.93 6.54 -2.39 -0.02 0.92 16 34 H 0.08 1.01 6.47 -2.38 -0.02 0.99 16 35 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.09 0.99 6.50 -2.39 -0.02 0.97 16 41 H 0.08 1.12 7.71 -2.39 -0.02 1.10 16 42 H 0.06 0.84 7.92 -2.39 -0.02 0.82 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.80 7.98 -2.39 -0.02 1.78 16 45 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.41 14.31 8.32 -92.71 -0.77 13.54 16 47 H 0.01 0.47 7.58 -2.39 -0.02 0.45 16 48 H 0.01 0.49 7.19 -2.39 -0.02 0.47 16 49 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 50 H 0.06 2.18 6.25 -2.39 -0.01 2.16 16 51 H 0.03 0.89 7.67 -2.39 -0.02 0.87 16 Total: -1.00 -71.29 401.02 0.19 -71.10 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.08 Total: 23.52 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.16 Total: -9.78 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -6.88 Total: -104.76 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.04 Total: -26.75 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -71.29 0.19 -71.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751501681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.878 kcal (2) G-P(sol) polarization free energy of solvation -71.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds