Wall clock time and date at job start Tue Mar 31 2020 16:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53125 * 109.52124 * 2 1 4 4 C 1.53035 * 109.27592 * 182.38167 * 3 2 1 5 5 N 1.46847 * 109.52780 * 59.17980 * 4 3 2 6 6 C 1.46892 * 111.00083 * 174.16464 * 5 4 3 7 7 C 1.52999 * 109.47124 * 170.00151 * 6 5 4 8 8 N 1.46498 * 109.47281 * 179.97438 * 7 6 5 9 9 C 1.34783 * 120.00380 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99456 * 359.97438 * 9 8 7 11 11 C 1.50693 * 119.99880 * 179.97438 * 9 8 7 12 12 C 1.50706 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.37632 * 120.12924 * 265.00072 * 12 11 9 14 14 C 1.38614 * 120.25049 * 179.97438 * 13 12 11 15 15 C 1.38650 * 120.50064 * 0.02562 * 14 13 12 16 16 C 1.37601 * 120.24925 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12470 * 84.72349 * 12 11 9 18 18 C 1.41397 * 120.24713 * 359.97438 * 17 12 11 19 19 H 1.07998 * 119.99588 * 329.70087 * 18 17 12 20 20 C 1.39948 * 120.00082 * 149.70100 * 18 17 12 21 21 N 1.30818 * 119.99680 * 162.01372 * 20 18 17 22 22 Si 1.86798 * 119.99768 * 342.01702 * 20 18 17 23 23 H 1.48494 * 109.47190 * 95.40206 * 22 20 18 24 24 H 1.48504 * 109.46678 * 215.40175 * 22 20 18 25 25 H 1.48496 * 109.47290 * 335.39809 * 22 20 18 26 26 C 1.46856 * 111.19200 * 298.25692 * 5 4 3 27 27 C 1.53035 * 109.52192 * 61.74662 * 26 5 4 28 28 H 1.08995 * 109.47137 * 59.99875 * 1 2 3 29 29 H 1.08993 * 109.46778 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46748 * 299.99738 * 1 2 3 31 31 H 1.08990 * 109.52219 * 120.12435 * 2 1 3 32 32 H 1.08998 * 109.50282 * 62.43943 * 3 2 1 33 33 H 1.08998 * 109.53418 * 302.34147 * 3 2 1 34 34 H 1.08999 * 109.45967 * 299.15871 * 4 3 2 35 35 H 1.08998 * 109.45414 * 179.19085 * 4 3 2 36 36 H 1.09001 * 109.47803 * 49.99651 * 6 5 4 37 37 H 1.09009 * 109.47215 * 289.99783 * 6 5 4 38 38 H 1.08999 * 109.47567 * 59.99502 * 7 6 5 39 39 H 1.08998 * 109.46703 * 299.99128 * 7 6 5 40 40 H 0.97004 * 120.00114 * 359.97438 * 8 7 6 41 41 H 1.09001 * 109.47727 * 60.00053 * 11 9 8 42 42 H 1.09000 * 109.47533 * 299.99358 * 11 9 8 43 43 H 1.08001 * 119.87731 * 359.97438 * 13 12 11 44 44 H 1.07998 * 119.75054 * 179.97438 * 14 13 12 45 45 H 1.08004 * 119.88166 * 179.97438 * 15 14 13 46 46 H 1.08007 * 120.12858 * 179.97438 * 16 15 14 47 47 H 0.97004 * 119.99666 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.45540 * 181.75566 * 26 5 4 49 49 H 1.08991 * 109.46486 * 301.72324 * 26 5 4 50 50 H 1.09000 * 109.50086 * 180.87994 * 27 26 5 51 51 H 1.08991 * 109.51096 * 60.75683 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4371 -0.0600 5 7 4.0116 0.7426 -1.2765 6 6 5.4685 0.8374 -1.4383 7 6 5.9184 -0.0961 -2.5640 8 7 7.3713 -0.0011 -2.7258 9 6 7.9946 -0.7399 -3.6651 10 8 7.3526 -1.4836 -4.3761 11 6 9.4891 -0.6417 -3.8318 12 6 9.9325 -1.5622 -4.9397 13 6 10.3793 -2.8306 -4.6468 14 6 10.7872 -3.6795 -5.6638 15 6 10.7508 -3.2625 -6.9856 16 6 10.3088 -1.9983 -7.3017 17 6 9.8857 -1.1302 -6.2779 18 6 9.4225 0.1684 -6.5914 19 1 8.6824 0.6436 -5.9647 20 6 9.9231 0.8379 -7.7138 21 7 9.2721 1.8578 -8.2113 22 14 11.5206 0.2750 -8.5016 23 1 11.2197 -0.6394 -9.6322 24 1 12.2670 1.4560 -9.0052 25 1 12.3450 -0.4386 -7.4936 26 6 3.5721 -0.6586 -1.2766 27 6 2.0430 -0.7150 -1.2531 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8943 -0.5156 0.8885 32 1 1.7153 1.9451 0.9109 33 1 1.6456 1.9704 -0.8679 34 1 3.9666 0.9225 0.8156 35 1 3.9378 2.4634 -0.0747 36 1 5.9571 0.5469 -0.5083 37 1 5.7406 1.8634 -1.6866 38 1 5.4299 0.1944 -3.4941 39 1 5.6465 -1.1220 -2.3157 40 1 7.8849 0.5935 -2.1568 41 1 9.9783 -0.9312 -2.9018 42 1 9.7603 0.3842 -4.0811 43 1 10.4122 -3.1658 -3.6206 44 1 11.1367 -4.6730 -5.4248 45 1 11.0714 -3.9320 -7.7701 46 1 10.2817 -1.6753 -8.3320 47 1 9.6193 2.3221 -8.9890 48 1 3.9401 -1.1545 -2.1750 49 1 3.9679 -1.1634 -0.3954 50 1 1.7175 -1.7552 -1.2374 51 1 1.6469 -0.2225 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777303551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:46 Heat of formation + Delta-G solvation = -32.052783 kcal Electronic energy + Delta-G solvation = -27924.202696 eV Core-core repulsion = 24208.074106 eV Total energy + Delta-G solvation = -3716.128590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.70743 -39.05216 -37.55897 -35.69071 -33.74484 -33.53650 -31.85373 -31.15691 -30.27839 -29.70161 -27.53828 -26.19701 -24.73688 -23.84181 -22.74831 -21.41016 -21.17018 -20.48988 -19.90094 -19.30168 -17.29927 -16.57289 -16.30402 -15.70263 -15.66604 -15.21648 -14.96780 -14.79882 -14.49794 -14.29410 -14.14487 -14.06096 -13.65667 -13.33888 -13.10178 -12.78422 -12.67208 -12.62801 -12.26118 -12.13521 -12.07609 -11.84141 -11.61150 -11.48542 -11.41065 -11.32388 -11.00518 -10.88731 -10.75722 -10.68284 -10.53895 -10.37054 -10.20668 -9.66217 -9.51174 -9.18055 -9.07387 -8.65979 -8.51884 -7.54616 -7.44895 -6.88375 -4.42112 2.60966 2.76829 3.16190 3.23062 3.35483 3.36692 3.40565 3.99974 4.03527 4.46673 4.53202 4.54060 4.57644 4.75239 4.98904 5.02245 5.12698 5.16747 5.27280 5.35027 5.37990 5.38901 5.41350 5.46631 5.60683 5.64662 5.68657 5.78765 5.85917 5.88605 5.90471 5.92440 5.94042 6.00628 6.12259 6.14090 6.19796 6.24116 6.33563 6.63396 6.75077 6.77391 6.87536 6.91513 7.00753 7.26114 7.48493 7.71513 7.79785 7.94661 7.98795 8.20130 8.41966 8.74239 8.87932 8.89500 10.13859 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.002365 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.048151 B =11838.944455 C =12563.115256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.111 4.111 4 C 0.056 3.944 5 N -0.533 5.533 6 C 0.047 3.953 7 C 0.118 3.882 8 N -0.744 5.744 9 C 0.517 3.483 10 O -0.520 6.520 11 C -0.074 4.074 12 C -0.167 4.167 13 C -0.069 4.069 14 C -0.243 4.243 15 C -0.080 4.080 16 C -0.233 4.233 17 C 0.109 3.891 18 C -0.443 4.443 19 H 0.089 0.911 20 C 0.084 3.916 21 N -0.810 5.810 22 Si 0.910 3.090 23 H -0.272 1.272 24 H -0.293 1.293 25 H -0.244 1.244 26 C 0.044 3.956 27 C -0.112 4.112 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.395 0.605 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.283 0.717 48 H 0.087 0.913 49 H 0.032 0.968 50 H 0.066 0.934 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 0.747 17.010 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.071 4.071 5 N -0.258 5.258 6 C -0.081 4.081 7 C -0.006 4.006 8 N -0.399 5.399 9 C 0.304 3.696 10 O -0.394 6.394 11 C -0.113 4.113 12 C -0.168 4.168 13 C -0.088 4.088 14 C -0.262 4.262 15 C -0.099 4.099 16 C -0.253 4.253 17 C 0.106 3.894 18 C -0.472 4.472 19 H 0.107 0.893 20 C -0.134 4.134 21 N -0.434 5.434 22 Si 0.736 3.264 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.167 1.167 26 C -0.083 4.083 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.228 0.772 41 H 0.096 0.904 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.094 0.906 48 H 0.105 0.895 49 H 0.050 0.950 50 H 0.085 0.915 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.703 0.661 15.910 19.186 hybrid contribution 1.154 -0.207 0.464 1.261 sum -9.549 0.454 16.374 18.961 Atomic orbital electron populations 1.21809 0.95106 1.01655 1.01753 1.21198 0.95644 0.96229 0.98302 1.21646 0.94486 0.96568 1.02195 1.22086 0.95966 0.98947 0.90146 1.61918 1.11542 1.14514 1.37823 1.22261 0.87602 1.00896 0.97357 1.21341 0.81535 0.98969 0.98787 1.46023 1.07479 1.47164 1.39271 1.21092 0.90909 0.79055 0.78554 1.90690 1.67540 1.37919 1.43221 1.20290 0.90394 1.02433 0.98218 1.19076 1.09687 0.95198 0.92861 1.20423 0.98088 0.93319 0.96942 1.20324 1.13446 0.99396 0.93065 1.20592 0.98324 0.95509 0.95432 1.20997 1.11362 0.95084 0.97811 1.17490 0.88501 0.93042 0.90344 1.19412 1.20698 0.98924 1.08128 0.89293 1.26159 0.98550 0.93919 0.94797 1.69712 1.36448 1.17982 1.19261 0.86344 0.82144 0.77569 0.80296 1.19774 1.22022 1.16708 1.22289 0.95908 0.88704 1.01433 1.21659 0.94603 1.00351 0.98373 0.92495 0.92759 0.92872 0.91721 0.91662 0.90894 0.95015 0.90659 0.94415 0.89869 0.90784 0.91777 0.77181 0.90399 0.88150 0.89153 0.89045 0.89035 0.88347 0.90620 0.89516 0.94954 0.91525 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.21 37.16 0.34 -0.64 16 2 C -0.10 -0.73 2.79 -90.49 -0.25 -0.99 16 3 C -0.11 -0.86 5.38 -26.65 -0.14 -1.01 16 4 C 0.06 0.49 5.42 -3.83 -0.02 0.47 16 5 N -0.53 -5.60 4.81 -234.67 -1.13 -6.73 16 6 C 0.05 0.50 5.39 -3.83 -0.02 0.48 16 7 C 0.12 1.63 4.92 -4.04 -0.02 1.61 16 8 N -0.74 -11.03 5.56 -60.30 -0.33 -11.36 16 9 C 0.52 10.18 7.42 -10.99 -0.08 10.09 16 10 O -0.52 -12.73 16.03 5.56 0.09 -12.64 16 11 C -0.07 -1.41 5.19 -29.03 -0.15 -1.56 16 12 C -0.17 -3.88 4.43 -103.91 -0.46 -4.35 16 13 C -0.07 -1.52 9.66 -39.66 -0.38 -1.90 16 14 C -0.24 -5.32 10.05 -39.29 -0.39 -5.72 16 15 C -0.08 -1.84 10.02 -39.66 -0.40 -2.24 16 16 C -0.23 -5.92 7.17 -38.87 -0.28 -6.20 16 17 C 0.11 2.85 5.10 -106.82 -0.54 2.30 16 18 C -0.44 -12.08 8.56 -37.74 -0.32 -12.40 16 19 H 0.09 2.55 6.99 -52.49 -0.37 2.19 16 20 C 0.08 2.24 5.41 -17.34 -0.09 2.14 16 21 N -0.81 -21.90 13.93 55.55 0.77 -21.13 16 22 Si 0.91 21.13 24.52 -169.99 -4.17 16.97 16 23 H -0.27 -6.22 6.71 56.52 0.38 -5.84 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.24 -5.76 6.85 56.52 0.39 -5.37 16 26 C 0.04 0.45 4.85 -3.83 -0.02 0.44 16 27 C -0.11 -1.00 5.38 -26.65 -0.14 -1.14 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 37 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 40 H 0.40 4.50 8.47 -40.82 -0.35 4.16 16 41 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 42 H 0.10 1.91 7.15 -51.93 -0.37 1.54 16 43 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 46 H 0.10 2.49 4.74 -52.48 -0.25 2.24 16 47 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 48 H 0.09 1.00 5.81 -51.93 -0.30 0.70 16 49 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -31.53 395.66 -10.92 -42.45 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.73 Total: 7.09 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.39 Total: -20.61 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.69 Total: -39.22 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.17 Total: 16.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.53 -10.92 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777303551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.394 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds