Wall clock time and date at job start Tue Mar 31 2020 16:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53125 * 109.52124 * 2 1 4 4 C 1.53035 * 109.27592 * 182.38167 * 3 2 1 5 5 N 1.46847 * 109.52780 * 59.17980 * 4 3 2 6 6 C 1.46892 * 111.00083 * 174.16464 * 5 4 3 7 7 C 1.52999 * 109.47124 * 170.00151 * 6 5 4 8 8 N 1.46498 * 109.47281 * 179.97438 * 7 6 5 9 9 C 1.34783 * 120.00380 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99456 * 359.97438 * 9 8 7 11 11 C 1.50693 * 119.99880 * 179.97438 * 9 8 7 12 12 C 1.50706 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.37632 * 120.12924 * 265.00072 * 12 11 9 14 14 C 1.38614 * 120.25049 * 179.97438 * 13 12 11 15 15 C 1.38650 * 120.50064 * 0.02562 * 14 13 12 16 16 C 1.37601 * 120.24925 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12470 * 84.72349 * 12 11 9 18 18 C 1.41397 * 120.24713 * 359.97438 * 17 12 11 19 19 H 1.07998 * 119.99588 * 329.70087 * 18 17 12 20 20 C 1.39948 * 120.00082 * 149.70100 * 18 17 12 21 21 N 1.30818 * 119.99680 * 162.01372 * 20 18 17 22 22 Si 1.86798 * 119.99768 * 342.01702 * 20 18 17 23 23 H 1.48494 * 109.47190 * 95.40206 * 22 20 18 24 24 H 1.48504 * 109.46678 * 215.40175 * 22 20 18 25 25 H 1.48496 * 109.47290 * 335.39809 * 22 20 18 26 26 C 1.46856 * 111.19200 * 298.25692 * 5 4 3 27 27 C 1.53035 * 109.52192 * 61.74662 * 26 5 4 28 28 H 1.08995 * 109.47137 * 59.99875 * 1 2 3 29 29 H 1.08993 * 109.46778 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46748 * 299.99738 * 1 2 3 31 31 H 1.08990 * 109.52219 * 120.12435 * 2 1 3 32 32 H 1.08998 * 109.50282 * 62.43943 * 3 2 1 33 33 H 1.08998 * 109.53418 * 302.34147 * 3 2 1 34 34 H 1.08999 * 109.45967 * 299.15871 * 4 3 2 35 35 H 1.08998 * 109.45414 * 179.19085 * 4 3 2 36 36 H 1.09001 * 109.47803 * 49.99651 * 6 5 4 37 37 H 1.09009 * 109.47215 * 289.99783 * 6 5 4 38 38 H 1.08999 * 109.47567 * 59.99502 * 7 6 5 39 39 H 1.08998 * 109.46703 * 299.99128 * 7 6 5 40 40 H 0.97004 * 120.00114 * 359.97438 * 8 7 6 41 41 H 1.09001 * 109.47727 * 60.00053 * 11 9 8 42 42 H 1.09000 * 109.47533 * 299.99358 * 11 9 8 43 43 H 1.08001 * 119.87731 * 359.97438 * 13 12 11 44 44 H 1.07998 * 119.75054 * 179.97438 * 14 13 12 45 45 H 1.08004 * 119.88166 * 179.97438 * 15 14 13 46 46 H 1.08007 * 120.12858 * 179.97438 * 16 15 14 47 47 H 0.97004 * 119.99666 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.45540 * 181.75566 * 26 5 4 49 49 H 1.08991 * 109.46486 * 301.72324 * 26 5 4 50 50 H 1.09000 * 109.50086 * 180.87994 * 27 26 5 51 51 H 1.08991 * 109.51096 * 60.75683 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4371 -0.0600 5 7 4.0116 0.7426 -1.2765 6 6 5.4685 0.8374 -1.4383 7 6 5.9184 -0.0961 -2.5640 8 7 7.3713 -0.0011 -2.7258 9 6 7.9946 -0.7399 -3.6651 10 8 7.3526 -1.4836 -4.3761 11 6 9.4891 -0.6417 -3.8318 12 6 9.9325 -1.5622 -4.9397 13 6 10.3793 -2.8306 -4.6468 14 6 10.7872 -3.6795 -5.6638 15 6 10.7508 -3.2625 -6.9856 16 6 10.3088 -1.9983 -7.3017 17 6 9.8857 -1.1302 -6.2779 18 6 9.4225 0.1684 -6.5914 19 1 8.6824 0.6436 -5.9647 20 6 9.9231 0.8379 -7.7138 21 7 9.2721 1.8578 -8.2113 22 14 11.5206 0.2750 -8.5016 23 1 11.2197 -0.6394 -9.6322 24 1 12.2670 1.4560 -9.0052 25 1 12.3450 -0.4386 -7.4936 26 6 3.5721 -0.6586 -1.2766 27 6 2.0430 -0.7150 -1.2531 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8943 -0.5156 0.8885 32 1 1.7153 1.9451 0.9109 33 1 1.6456 1.9704 -0.8679 34 1 3.9666 0.9225 0.8156 35 1 3.9378 2.4634 -0.0747 36 1 5.9571 0.5469 -0.5083 37 1 5.7406 1.8634 -1.6866 38 1 5.4299 0.1944 -3.4941 39 1 5.6465 -1.1220 -2.3157 40 1 7.8849 0.5935 -2.1568 41 1 9.9783 -0.9312 -2.9018 42 1 9.7603 0.3842 -4.0811 43 1 10.4122 -3.1658 -3.6206 44 1 11.1367 -4.6730 -5.4248 45 1 11.0714 -3.9320 -7.7701 46 1 10.2817 -1.6753 -8.3320 47 1 9.6193 2.3221 -8.9890 48 1 3.9401 -1.1545 -2.1750 49 1 3.9679 -1.1634 -0.3954 50 1 1.7175 -1.7552 -1.2374 51 1 1.6469 -0.2225 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777303551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:45 Heat of formation + Delta-G solvation = -52.451951 kcal Electronic energy + Delta-G solvation = -27925.087270 eV Core-core repulsion = 24208.074106 eV Total energy + Delta-G solvation = -3717.013164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94179 -40.20433 -39.26984 -36.70989 -35.47626 -34.89874 -33.52378 -32.15860 -31.89831 -30.70657 -28.82799 -27.46512 -26.51227 -24.65924 -23.57588 -23.17792 -22.22450 -21.97885 -20.95451 -20.57062 -19.23970 -17.94106 -17.67740 -17.21106 -16.85903 -16.44488 -16.22717 -15.94364 -15.72949 -15.44868 -15.35187 -15.21642 -14.94792 -14.64942 -14.52351 -14.44306 -13.84748 -13.75026 -13.63334 -13.36372 -13.12900 -13.00535 -12.83606 -12.71477 -12.67309 -12.50042 -12.43355 -12.28133 -12.12113 -11.98272 -11.55226 -11.52619 -11.36546 -11.19857 -11.09989 -10.96429 -10.82402 -10.04233 -9.38981 -9.31727 -9.27625 -8.85327 -6.43563 0.80600 0.91521 1.27662 1.40320 1.49877 1.81369 2.14499 2.21433 2.65647 3.04149 3.56391 3.70046 3.85246 3.86864 3.91514 4.05257 4.08542 4.29594 4.30459 4.35977 4.39407 4.44302 4.48489 4.50354 4.57144 4.60095 4.71121 4.74764 4.80757 4.82906 4.88786 4.90854 4.94403 4.95426 5.00838 5.01829 5.13543 5.17907 5.21937 5.27477 5.34439 5.38834 5.49605 5.54724 5.69214 5.87958 5.96863 6.04491 6.06688 6.11689 6.30692 6.47093 6.65157 6.82151 6.92471 7.42194 8.22695 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.002365 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.048151 B =11838.944455 C =12563.115256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.109 4.109 4 C 0.056 3.944 5 N -0.548 5.548 6 C 0.059 3.941 7 C 0.123 3.877 8 N -0.723 5.723 9 C 0.515 3.485 10 O -0.577 6.577 11 C -0.073 4.073 12 C -0.173 4.173 13 C -0.079 4.079 14 C -0.231 4.231 15 C -0.092 4.092 16 C -0.257 4.257 17 C 0.082 3.918 18 C -0.468 4.468 19 H 0.056 0.944 20 C 0.047 3.953 21 N -0.853 5.853 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.250 1.250 26 C 0.045 3.955 27 C -0.111 4.111 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.060 0.940 40 H 0.415 0.585 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.090 0.910 47 H 0.291 0.709 48 H 0.065 0.935 49 H 0.038 0.962 50 H 0.072 0.928 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.905 -0.454 19.636 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.274 5.274 6 C -0.069 4.069 7 C -0.002 4.002 8 N -0.378 5.378 9 C 0.303 3.697 10 O -0.456 6.456 11 C -0.112 4.112 12 C -0.175 4.175 13 C -0.097 4.097 14 C -0.250 4.250 15 C -0.110 4.110 16 C -0.276 4.276 17 C 0.079 3.921 18 C -0.498 4.498 19 H 0.075 0.925 20 C -0.167 4.167 21 N -0.480 5.480 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.173 1.173 26 C -0.082 4.082 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.252 0.748 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.056 0.944 50 H 0.091 0.909 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.673 -0.499 18.586 20.959 hybrid contribution 0.797 0.000 -0.210 0.824 sum -8.876 -0.499 18.376 20.413 Atomic orbital electron populations 1.21783 0.94288 1.01965 1.02030 1.21182 0.96307 0.96060 0.97532 1.21645 0.93858 0.96588 1.02576 1.22164 0.96551 0.99092 0.89363 1.61928 1.11326 1.14767 1.39370 1.22136 0.88089 1.00140 0.96570 1.21316 0.80432 0.99716 0.98686 1.45794 1.08129 1.45922 1.37967 1.21191 0.91162 0.78772 0.78535 1.90665 1.68598 1.40746 1.45575 1.20343 0.90333 1.01544 0.99019 1.19577 1.08342 0.96595 0.92947 1.20902 0.97098 0.92600 0.99072 1.20882 1.10805 1.00782 0.92496 1.20976 0.97930 0.94937 0.97152 1.21145 1.12675 0.96397 0.97422 1.17753 0.89431 0.92783 0.92108 1.19317 1.21516 1.00076 1.08922 0.92541 1.26797 1.00889 0.93924 0.95104 1.69748 1.38064 1.19599 1.20563 0.85507 0.78863 0.77519 0.79276 1.19505 1.20415 1.17332 1.22238 0.96787 0.88612 1.00587 1.21649 0.93671 1.00867 0.98684 0.93001 0.92471 0.91802 0.91221 0.89872 0.91992 0.94233 0.89955 0.92417 0.89294 0.94033 0.92173 0.74831 0.85852 0.88546 0.85461 0.85367 0.86104 0.89227 0.89897 0.91629 0.94395 0.90909 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.21 71.98 0.66 -1.06 16 2 C -0.09 -1.29 2.79 -10.71 -0.03 -1.32 16 3 C -0.11 -1.51 5.38 30.65 0.16 -1.35 16 4 C 0.06 0.86 5.42 86.33 0.47 1.33 16 5 N -0.55 -11.16 4.81 -896.36 -4.31 -15.46 16 6 C 0.06 1.18 5.39 86.30 0.46 1.64 16 7 C 0.12 3.45 4.92 86.38 0.43 3.87 16 8 N -0.72 -21.11 5.56 -463.07 -2.57 -23.68 16 9 C 0.52 20.39 7.42 87.65 0.65 21.04 16 10 O -0.58 -29.14 16.03 -3.02 -0.05 -29.19 16 11 C -0.07 -2.72 5.19 29.10 0.15 -2.57 16 12 C -0.17 -7.92 4.43 -19.40 -0.09 -8.01 16 13 C -0.08 -3.21 9.66 22.22 0.21 -2.99 16 14 C -0.23 -9.27 10.05 22.46 0.23 -9.05 16 15 C -0.09 -4.02 10.02 22.22 0.22 -3.80 16 16 C -0.26 -13.03 7.17 22.73 0.16 -12.86 16 17 C 0.08 4.33 5.10 -21.29 -0.11 4.22 16 18 C -0.47 -26.74 8.56 23.46 0.20 -26.54 16 19 H 0.06 3.47 6.99 -2.91 -0.02 3.45 16 20 C 0.05 2.57 5.41 85.26 0.46 3.03 16 21 N -0.85 -48.22 13.93 21.83 0.30 -47.92 16 22 Si 0.96 44.44 24.52 68.60 1.68 46.12 16 23 H -0.27 -12.12 6.71 99.48 0.67 -11.45 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.25 -11.58 6.85 99.48 0.68 -10.90 16 26 C 0.05 0.93 4.85 86.32 0.42 1.34 16 27 C -0.11 -1.95 5.38 30.65 0.16 -1.78 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 36 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 37 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.76 6.21 -2.39 -0.01 1.75 16 40 H 0.41 8.75 8.47 -92.71 -0.79 7.97 16 41 H 0.12 3.39 8.05 -2.39 -0.02 3.37 16 42 H 0.10 3.69 7.15 -2.39 -0.02 3.68 16 43 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 44 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 45 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 46 H 0.09 4.59 4.74 -2.91 -0.01 4.58 16 47 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 48 H 0.07 1.59 5.81 -2.38 -0.01 1.58 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.80 395.66 -0.05 -71.85 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.06 Total: 33.12 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.83 Total: -34.84 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -6.58 Total: -87.06 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.05 Total: -29.19 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.68 Total: 46.12 kcal Total: -71.80 -0.05 -71.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777303551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.399 kcal (2) G-P(sol) polarization free energy of solvation -71.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds