Wall clock time and date at job start Tue Mar 31 2020 16:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46842 * 111.00367 * 2 1 4 4 C 1.53038 * 109.52418 * 185.84251 * 3 2 1 5 5 C 1.53114 * 109.27641 * 300.81991 * 4 3 2 6 6 C 1.52998 * 109.52539 * 297.68693 * 5 4 3 7 7 C 1.53009 * 109.52222 * 177.56004 * 5 4 3 8 8 N 1.46499 * 109.46950 * 180.12523 * 7 5 4 9 9 C 1.34774 * 120.00005 * 180.02562 * 8 7 5 10 10 O 1.21278 * 119.99526 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00256 * 180.02562 * 9 8 7 12 12 C 1.50701 * 109.47556 * 179.97438 * 11 9 8 13 13 C 1.37630 * 120.12796 * 265.00188 * 12 11 9 14 14 C 1.38619 * 120.24694 * 180.29070 * 13 12 11 15 15 C 1.38655 * 120.49866 * 359.44683 * 14 13 12 16 16 C 1.37604 * 120.25111 * 0.55480 * 15 14 13 17 17 C 1.40697 * 120.12236 * 85.01918 * 12 11 9 18 18 C 1.41390 * 120.25030 * 359.96070 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08548 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.08926 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47012 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47407 * 119.99663 * 22 20 18 25 25 H 1.48508 * 109.46756 * 239.99409 * 22 20 18 26 26 C 1.53123 * 109.21259 * 57.62384 * 5 4 3 27 27 C 1.46846 * 110.99834 * 124.21477 * 2 1 3 28 28 H 1.09000 * 109.47052 * 59.99986 * 1 2 3 29 29 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46654 * 300.00352 * 1 2 3 31 31 H 1.08996 * 109.46304 * 65.82311 * 3 2 1 32 32 H 1.09007 * 109.45182 * 305.85023 * 3 2 1 33 33 H 1.08997 * 109.50312 * 180.87835 * 4 3 2 34 34 H 1.09000 * 109.50360 * 60.75859 * 4 3 2 35 35 H 1.09005 * 109.46947 * 299.87843 * 6 5 4 36 36 H 1.08997 * 109.47156 * 59.87006 * 6 5 4 37 37 H 1.08999 * 109.47627 * 179.87241 * 6 5 4 38 38 H 1.08991 * 109.46763 * 60.12914 * 7 5 4 39 39 H 1.08996 * 109.46622 * 300.12425 * 7 5 4 40 40 H 0.97004 * 120.00509 * 0.02562 * 8 7 5 41 41 H 1.09003 * 109.47324 * 59.99832 * 11 9 8 42 42 H 1.09000 * 109.47440 * 299.99911 * 11 9 8 43 43 H 1.07995 * 119.88141 * 0.02562 * 13 12 11 44 44 H 1.07999 * 119.74930 * 179.69896 * 14 13 12 45 45 H 1.08004 * 119.87487 * 180.29445 * 15 14 13 46 46 H 1.07992 * 120.12974 * 179.74704 * 16 15 14 47 47 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.50577 * 62.32277 * 26 5 4 49 49 H 1.09007 * 109.50243 * 182.43489 * 26 5 4 50 50 H 1.09000 * 109.46250 * 294.16963 * 27 2 1 51 51 H 1.08993 * 109.46532 * 54.14965 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1188 0.5368 1.0142 6 6 3.7973 1.2373 2.3359 7 6 5.6362 0.4447 0.8403 8 7 6.2093 -0.3208 1.9502 9 6 7.5393 -0.5314 2.0077 10 8 8.2615 -0.0876 1.1403 11 6 8.1288 -1.3193 3.1490 12 6 9.6233 -1.4100 2.9778 13 6 10.1830 -2.5075 2.3643 14 6 11.5579 -2.5962 2.2109 15 6 12.3835 -1.5778 2.6623 16 6 11.8458 -0.4713 3.2788 17 6 10.4517 -0.3732 3.4450 18 6 9.8879 0.7593 4.0765 19 1 8.8736 1.0542 3.8512 20 6 10.6440 1.4982 4.9934 21 7 11.7304 0.9841 5.5101 22 14 10.1020 3.2184 5.4797 23 1 8.8507 3.5653 4.7594 24 1 9.8601 3.2657 6.9441 25 1 11.1649 4.1919 5.1219 26 6 3.5183 -0.8717 1.0223 27 6 1.9952 -0.7709 1.1337 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.7326 1.8608 0.9375 32 1 1.5635 1.9255 -0.8331 33 1 3.9100 2.3510 -0.1311 34 1 3.7814 0.8566 -1.0907 35 1 4.2232 2.2406 2.3283 36 1 2.7162 1.3025 2.4589 37 1 4.2233 0.6679 3.1620 38 1 6.0625 1.4477 0.8325 39 1 5.8643 -0.0545 -0.1014 40 1 5.6316 -0.6761 2.6437 41 1 7.7028 -2.3226 3.1562 42 1 7.9002 -0.8208 4.0910 43 1 9.5492 -3.3045 2.0047 44 1 11.9889 -3.4633 1.7326 45 1 13.4530 -1.6552 2.5334 46 1 12.4909 0.3188 3.6333 47 1 12.2548 1.4963 6.1453 48 1 3.7815 -1.3849 0.0974 49 1 3.9102 -1.4296 1.8728 50 1 1.7325 -0.2710 2.0660 51 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780741381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:49 Heat of formation + Delta-G solvation = -29.640832 kcal Electronic energy + Delta-G solvation = -28694.633483 eV Core-core repulsion = 24978.609483 eV Total energy + Delta-G solvation = -3716.024000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.26338 -38.89848 -37.29000 -35.82841 -33.57263 -33.01913 -31.59654 -31.14824 -29.41077 -28.78753 -27.51293 -26.35892 -25.10443 -24.47313 -23.48237 -21.73302 -20.88158 -20.37158 -19.29412 -18.51523 -17.14848 -16.66135 -15.84163 -15.56791 -15.40267 -15.37499 -15.16264 -14.86444 -14.44563 -14.30592 -13.92068 -13.85860 -13.45732 -13.22973 -12.96700 -12.71649 -12.55509 -12.40943 -12.27570 -12.13746 -11.81887 -11.74775 -11.67297 -11.52632 -11.32480 -11.12378 -10.96682 -10.93836 -10.72305 -10.66149 -10.53253 -10.41661 -10.34619 -9.43172 -9.31915 -9.13019 -9.07069 -8.60464 -8.57280 -7.25738 -7.23678 -6.69285 -4.29211 2.81801 3.02626 3.09695 3.14962 3.30531 3.44004 3.63031 3.75650 3.97060 4.44010 4.46569 4.58672 4.70847 4.86839 4.97079 5.00751 5.06526 5.17240 5.23257 5.32148 5.42413 5.45225 5.52546 5.55039 5.62444 5.66896 5.74328 5.80750 5.85724 5.89834 5.96289 5.99803 6.06166 6.13252 6.22674 6.27755 6.34136 6.48729 6.56339 6.76551 6.78620 6.85230 6.89467 7.13611 7.34935 7.47624 7.69690 7.95276 8.03274 8.13754 8.18425 8.36872 8.70249 8.95810 8.97331 9.06980 10.25061 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002974 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.889191 B = 9411.671191 C =10755.314327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.056 3.944 4 C -0.104 4.104 5 C -0.072 4.072 6 C -0.146 4.146 7 C 0.134 3.866 8 N -0.743 5.743 9 C 0.513 3.487 10 O -0.522 6.522 11 C -0.071 4.071 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.240 4.240 15 C -0.107 4.107 16 C -0.160 4.160 17 C 0.128 3.872 18 C -0.455 4.455 19 H 0.074 0.926 20 C 0.076 3.924 21 N -0.796 5.796 22 Si 0.902 3.098 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.272 1.272 26 C -0.106 4.106 27 C 0.054 3.946 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.393 0.607 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.278 0.722 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.036 0.964 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.294 -0.156 -4.988 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.143 4.143 5 C -0.073 4.073 6 C -0.203 4.203 7 C 0.009 3.991 8 N -0.398 5.398 9 C 0.301 3.699 10 O -0.395 6.395 11 C -0.111 4.111 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.126 3.874 18 C -0.485 4.485 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.422 5.422 22 Si 0.727 3.273 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.197 1.197 26 C -0.144 4.144 27 C -0.073 4.073 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.228 0.772 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.054 0.946 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.402 0.005 -5.883 20.274 hybrid contribution -0.738 1.045 1.354 1.863 sum -20.140 1.050 -4.528 20.669 Atomic orbital electron populations 1.22345 0.87464 1.01999 1.00510 1.61916 1.07336 1.13935 1.43609 1.22115 0.95568 0.89007 1.00507 1.21576 0.93967 1.00300 0.98412 1.20832 0.94471 0.95905 0.96082 1.21981 1.01119 1.00875 0.96357 1.21229 0.90794 0.96653 0.90383 1.46167 1.08166 1.57900 1.27613 1.21198 0.80868 0.80092 0.87749 1.90678 1.59523 1.49399 1.39943 1.20264 0.95237 0.98660 0.96924 1.19060 0.91693 0.96706 1.10635 1.20297 0.94363 0.96642 0.98698 1.20306 0.93550 1.00461 1.11589 1.20672 0.97101 0.95303 0.99516 1.21290 0.95746 0.98292 1.02570 1.17344 0.91398 0.90440 0.88232 1.19492 1.00005 1.08747 1.20239 0.90765 1.25875 0.94197 0.99147 0.94852 1.69830 1.13678 1.36614 1.22074 0.86363 0.79983 0.82483 0.78498 1.18553 1.20083 1.19746 1.21648 0.93796 0.96020 1.02890 1.22141 0.95754 0.98019 0.91433 0.91434 0.91427 0.95849 0.94544 0.90846 0.91049 0.90675 0.92220 0.92622 0.92262 0.91847 0.91896 0.77232 0.90747 0.88707 0.89786 0.89696 0.89624 0.86575 0.91084 0.90745 0.91239 0.94565 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.59 60.07 0.58 0.75 16 2 N -0.54 -4.66 4.91 -242.96 -1.19 -5.85 16 3 C 0.06 0.46 5.22 -3.84 -0.02 0.44 16 4 C -0.10 -0.94 4.88 -26.65 -0.13 -1.07 16 5 C -0.07 -0.70 0.53 -154.38 -0.08 -0.78 16 6 C -0.15 -1.37 7.73 37.16 0.29 -1.08 16 7 C 0.13 1.76 4.57 -4.04 -0.02 1.74 16 8 N -0.74 -10.74 4.98 -60.30 -0.30 -11.04 16 9 C 0.51 10.07 7.46 -10.99 -0.08 9.99 16 10 O -0.52 -12.71 16.03 5.56 0.09 -12.62 16 11 C -0.07 -1.40 5.18 -29.04 -0.15 -1.55 16 12 C -0.18 -4.38 4.43 -103.92 -0.46 -4.84 16 13 C -0.08 -1.92 9.66 -39.66 -0.38 -2.31 16 14 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 15 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.16 -4.35 8.68 -38.87 -0.34 -4.68 16 17 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 18 C -0.45 -12.11 8.14 -37.75 -0.31 -12.42 16 19 H 0.07 1.93 6.68 -52.48 -0.35 1.58 16 20 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 21 N -0.80 -20.79 10.97 55.55 0.61 -20.18 16 22 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.11 -0.96 4.68 -26.65 -0.12 -1.08 16 27 C 0.05 0.45 5.22 -3.83 -0.02 0.43 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.30 6.51 -51.93 -0.34 -0.04 16 32 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.47 4.93 -51.93 -0.26 0.22 16 37 H 0.06 0.56 6.87 -51.93 -0.36 0.20 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.39 4.55 6.19 -40.82 -0.25 4.30 16 41 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 42 H 0.09 1.84 7.06 -51.93 -0.37 1.47 16 43 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 46 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 47 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.59 6.95 -51.92 -0.36 0.23 16 50 H 0.04 0.30 6.52 -51.93 -0.34 -0.04 16 51 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -31.20 392.45 -11.05 -42.25 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.41 Total: 8.38 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.73 Total: -20.90 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.88 Total: -37.07 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.20 -11.05 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780741381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.609 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds