Wall clock time and date at job start Tue Mar 31 2020 16:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46842 * 111.00367 * 2 1 4 4 C 1.53038 * 109.52418 * 185.84251 * 3 2 1 5 5 C 1.53114 * 109.27641 * 300.81991 * 4 3 2 6 6 C 1.52998 * 109.52539 * 297.68693 * 5 4 3 7 7 C 1.53009 * 109.52222 * 177.56004 * 5 4 3 8 8 N 1.46499 * 109.46950 * 180.12523 * 7 5 4 9 9 C 1.34774 * 120.00005 * 180.02562 * 8 7 5 10 10 O 1.21278 * 119.99526 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00256 * 180.02562 * 9 8 7 12 12 C 1.50701 * 109.47556 * 179.97438 * 11 9 8 13 13 C 1.37630 * 120.12796 * 265.00188 * 12 11 9 14 14 C 1.38619 * 120.24694 * 180.29070 * 13 12 11 15 15 C 1.38655 * 120.49866 * 359.44683 * 14 13 12 16 16 C 1.37604 * 120.25111 * 0.55480 * 15 14 13 17 17 C 1.40697 * 120.12236 * 85.01918 * 12 11 9 18 18 C 1.41390 * 120.25030 * 359.96070 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08548 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.08926 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47012 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47407 * 119.99663 * 22 20 18 25 25 H 1.48508 * 109.46756 * 239.99409 * 22 20 18 26 26 C 1.53123 * 109.21259 * 57.62384 * 5 4 3 27 27 C 1.46846 * 110.99834 * 124.21477 * 2 1 3 28 28 H 1.09000 * 109.47052 * 59.99986 * 1 2 3 29 29 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46654 * 300.00352 * 1 2 3 31 31 H 1.08996 * 109.46304 * 65.82311 * 3 2 1 32 32 H 1.09007 * 109.45182 * 305.85023 * 3 2 1 33 33 H 1.08997 * 109.50312 * 180.87835 * 4 3 2 34 34 H 1.09000 * 109.50360 * 60.75859 * 4 3 2 35 35 H 1.09005 * 109.46947 * 299.87843 * 6 5 4 36 36 H 1.08997 * 109.47156 * 59.87006 * 6 5 4 37 37 H 1.08999 * 109.47627 * 179.87241 * 6 5 4 38 38 H 1.08991 * 109.46763 * 60.12914 * 7 5 4 39 39 H 1.08996 * 109.46622 * 300.12425 * 7 5 4 40 40 H 0.97004 * 120.00509 * 0.02562 * 8 7 5 41 41 H 1.09003 * 109.47324 * 59.99832 * 11 9 8 42 42 H 1.09000 * 109.47440 * 299.99911 * 11 9 8 43 43 H 1.07995 * 119.88141 * 0.02562 * 13 12 11 44 44 H 1.07999 * 119.74930 * 179.69896 * 14 13 12 45 45 H 1.08004 * 119.87487 * 180.29445 * 15 14 13 46 46 H 1.07992 * 120.12974 * 179.74704 * 16 15 14 47 47 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.50577 * 62.32277 * 26 5 4 49 49 H 1.09007 * 109.50243 * 182.43489 * 26 5 4 50 50 H 1.09000 * 109.46250 * 294.16963 * 27 2 1 51 51 H 1.08993 * 109.46532 * 54.14965 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1188 0.5368 1.0142 6 6 3.7973 1.2373 2.3359 7 6 5.6362 0.4447 0.8403 8 7 6.2093 -0.3208 1.9502 9 6 7.5393 -0.5314 2.0077 10 8 8.2615 -0.0876 1.1403 11 6 8.1288 -1.3193 3.1490 12 6 9.6233 -1.4100 2.9778 13 6 10.1830 -2.5075 2.3643 14 6 11.5579 -2.5962 2.2109 15 6 12.3835 -1.5778 2.6623 16 6 11.8458 -0.4713 3.2788 17 6 10.4517 -0.3732 3.4450 18 6 9.8879 0.7593 4.0765 19 1 8.8736 1.0542 3.8512 20 6 10.6440 1.4982 4.9934 21 7 11.7304 0.9841 5.5101 22 14 10.1020 3.2184 5.4797 23 1 8.8507 3.5653 4.7594 24 1 9.8601 3.2657 6.9441 25 1 11.1649 4.1919 5.1219 26 6 3.5183 -0.8717 1.0223 27 6 1.9952 -0.7709 1.1337 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.7326 1.8608 0.9375 32 1 1.5635 1.9255 -0.8331 33 1 3.9100 2.3510 -0.1311 34 1 3.7814 0.8566 -1.0907 35 1 4.2232 2.2406 2.3283 36 1 2.7162 1.3025 2.4589 37 1 4.2233 0.6679 3.1620 38 1 6.0625 1.4477 0.8325 39 1 5.8643 -0.0545 -0.1014 40 1 5.6316 -0.6761 2.6437 41 1 7.7028 -2.3226 3.1562 42 1 7.9002 -0.8208 4.0910 43 1 9.5492 -3.3045 2.0047 44 1 11.9889 -3.4633 1.7326 45 1 13.4530 -1.6552 2.5334 46 1 12.4909 0.3188 3.6333 47 1 12.2548 1.4963 6.1453 48 1 3.7815 -1.3849 0.0974 49 1 3.9102 -1.4296 1.8728 50 1 1.7325 -0.2710 2.0660 51 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780741381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:48 Heat of formation + Delta-G solvation = -48.169936 kcal Electronic energy + Delta-G solvation = -28695.436965 eV Core-core repulsion = 24978.609483 eV Total energy + Delta-G solvation = -3716.827482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23785 -40.28958 -39.04258 -36.81526 -35.48977 -34.24382 -33.31745 -31.83762 -31.33637 -29.69615 -28.76511 -27.63560 -26.77581 -25.46783 -24.20849 -22.82614 -22.59641 -21.89587 -20.94109 -19.30902 -19.05232 -17.97175 -17.33999 -16.96590 -16.58691 -16.30159 -16.15007 -16.04060 -15.73682 -15.50019 -15.34086 -14.99029 -14.82486 -14.54265 -14.36877 -14.26546 -13.55921 -13.39948 -13.36562 -13.33214 -13.00965 -12.92113 -12.88464 -12.74299 -12.59661 -12.54141 -12.48631 -12.38724 -12.10929 -12.02453 -11.54442 -11.35900 -11.30679 -11.19179 -11.17735 -11.02584 -10.70586 -9.95463 -9.21580 -9.18923 -9.14652 -8.58850 -6.28138 0.99862 1.14400 1.35499 1.48863 1.52326 1.88723 2.20023 2.42287 2.79585 3.03562 3.61682 3.70074 3.77703 3.81391 4.17164 4.20644 4.23640 4.36069 4.41179 4.42761 4.44673 4.51179 4.60226 4.62731 4.68859 4.71012 4.73081 4.78189 4.79578 4.82083 4.87233 4.95154 5.04524 5.05751 5.06029 5.09788 5.11242 5.21332 5.25056 5.33605 5.37912 5.48487 5.56105 5.60800 5.79011 6.05195 6.17120 6.18257 6.18392 6.22532 6.43291 6.69457 6.77211 7.00565 7.12668 7.49470 8.37953 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002974 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.889191 B = 9411.671191 C =10755.314327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.060 3.940 4 C -0.104 4.104 5 C -0.061 4.061 6 C -0.144 4.144 7 C 0.135 3.865 8 N -0.719 5.719 9 C 0.515 3.485 10 O -0.577 6.577 11 C -0.070 4.070 12 C -0.186 4.186 13 C -0.092 4.092 14 C -0.243 4.243 15 C -0.118 4.118 16 C -0.195 4.195 17 C 0.095 3.905 18 C -0.480 4.480 19 H 0.071 0.929 20 C 0.035 3.965 21 N -0.827 5.827 22 Si 0.972 3.028 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.270 1.270 26 C -0.103 4.103 27 C 0.057 3.943 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.411 0.589 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.285 0.715 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.041 0.959 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.894 -0.638 -4.694 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.068 4.068 4 C -0.142 4.142 5 C -0.062 4.062 6 C -0.201 4.201 7 C 0.011 3.989 8 N -0.374 5.374 9 C 0.303 3.697 10 O -0.455 6.455 11 C -0.109 4.109 12 C -0.188 4.188 13 C -0.110 4.110 14 C -0.262 4.262 15 C -0.136 4.136 16 C -0.214 4.214 17 C 0.092 3.908 18 C -0.510 4.510 19 H 0.089 0.911 20 C -0.179 4.179 21 N -0.454 5.454 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.184 1.184 25 H -0.195 1.195 26 C -0.141 4.141 27 C -0.071 4.071 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.248 0.752 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.060 0.940 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.056 -0.503 -5.566 22.753 hybrid contribution 0.059 1.094 1.190 1.617 sum -21.998 0.591 -4.376 22.437 Atomic orbital electron populations 1.22376 0.86331 1.02578 1.00974 1.61921 1.08462 1.14006 1.43897 1.22078 0.94533 0.89175 1.01030 1.21564 0.94931 1.00109 0.97593 1.20741 0.91678 0.96921 0.96845 1.21964 1.02034 1.00281 0.95810 1.21289 0.93129 0.95109 0.89342 1.45914 1.06756 1.56632 1.28087 1.21128 0.82050 0.79583 0.86921 1.90660 1.61157 1.51798 1.41933 1.20283 0.92734 1.00961 0.96939 1.19559 0.94076 0.96008 1.09184 1.20743 0.94916 0.97261 0.98099 1.20725 0.93891 1.00861 1.10758 1.20946 0.98481 0.95040 0.99144 1.21307 0.96158 0.99135 1.04844 1.17752 0.91906 0.91785 0.89309 1.19624 1.00275 1.09806 1.21297 0.91099 1.26672 0.94125 1.02663 0.94449 1.69889 1.14678 1.38157 1.22631 0.85320 0.79294 0.77300 0.78789 1.18616 1.18422 1.19526 1.21624 0.94735 0.95125 1.02626 1.22119 0.94789 0.98570 0.91582 0.90917 0.90836 0.95428 0.94176 0.90086 0.90936 0.91529 0.93049 0.91186 0.92166 0.93710 0.92982 0.75168 0.86934 0.88518 0.86524 0.86692 0.87728 0.88585 0.90410 0.91887 0.90499 0.94047 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 127.69 1.22 1.51 16 2 N -0.56 -8.31 4.91 -922.60 -4.53 -12.85 16 3 C 0.06 0.86 5.22 86.33 0.45 1.31 16 4 C -0.10 -1.75 4.88 30.65 0.15 -1.60 16 5 C -0.06 -1.11 0.53 -52.10 -0.03 -1.13 16 6 C -0.14 -2.41 7.73 71.98 0.56 -1.85 16 7 C 0.14 3.51 4.57 86.38 0.39 3.91 16 8 N -0.72 -19.99 4.98 -463.07 -2.31 -22.29 16 9 C 0.52 19.99 7.46 87.66 0.65 20.64 16 10 O -0.58 -28.62 16.03 -3.02 -0.05 -28.67 16 11 C -0.07 -2.67 5.18 29.10 0.15 -2.52 16 12 C -0.19 -9.10 4.43 -19.41 -0.09 -9.19 16 13 C -0.09 -4.22 9.66 22.22 0.21 -4.00 16 14 C -0.24 -11.30 10.05 22.46 0.23 -11.07 16 15 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 16 C -0.19 -11.00 8.68 22.73 0.20 -10.81 16 17 C 0.09 5.28 5.56 -21.29 -0.12 5.16 16 18 C -0.48 -26.26 8.14 23.46 0.19 -26.07 16 19 H 0.07 3.78 6.68 -2.91 -0.02 3.76 16 20 C 0.04 1.82 5.16 85.26 0.44 2.26 16 21 N -0.83 -44.41 10.97 21.82 0.24 -44.17 16 22 Si 0.97 39.57 29.59 68.60 2.03 41.60 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 26 C -0.10 -1.66 4.68 30.65 0.14 -1.52 16 27 C 0.06 0.79 5.22 86.33 0.45 1.24 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.04 0.56 6.51 -2.39 -0.02 0.54 16 32 H 0.08 1.05 8.12 -2.38 -0.02 1.03 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 1.00 4.93 -2.39 -0.01 0.99 16 37 H 0.06 0.99 6.87 -2.39 -0.02 0.98 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.41 8.60 6.19 -92.71 -0.57 8.03 16 41 H 0.11 3.39 8.05 -2.39 -0.02 3.37 16 42 H 0.10 3.68 7.06 -2.39 -0.02 3.66 16 43 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.10 5.66 6.22 -2.91 -0.02 5.64 16 47 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 48 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.08 1.11 6.95 -2.38 -0.02 1.09 16 50 H 0.04 0.54 6.52 -2.39 -0.02 0.53 16 51 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 Total: -1.00 -69.74 392.45 1.16 -68.58 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.34 Total: 37.24 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 5.43 Total: -39.44 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -6.60 Total: -79.31 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -69.74 1.16 -68.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780741381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.412 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds