Wall clock time and date at job start Tue Mar 31 2020 15:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.05304 * 2 1 4 4 C 1.54266 * 110.03705 * 238.58424 * 2 1 3 5 5 C 1.54884 * 104.19167 * 264.32247 * 4 2 1 6 6 C 1.54959 * 102.78277 * 322.08505 * 5 4 2 7 7 C 1.53877 * 110.03358 * 121.41111 * 2 1 3 8 8 H 1.09007 * 110.02456 * 359.95846 * 7 2 1 9 9 N 1.46499 * 110.03565 * 238.57488 * 7 2 1 10 10 N 1.40101 * 119.99542 * 150.68759 * 9 7 2 11 11 C 1.29750 * 119.99483 * 180.02562 * 10 9 7 12 12 C 1.47497 * 119.99594 * 180.27868 * 11 10 9 13 13 C 1.39724 * 120.13235 * 359.45234 * 12 11 10 14 14 C 1.37939 * 119.95242 * 179.76887 * 13 12 11 15 15 C 1.38301 * 120.21504 * 0.47996 * 14 13 12 16 16 C 1.38827 * 120.25955 * 359.77126 * 15 14 13 17 17 O 1.35913 * 119.97566 * 179.97438 * 16 15 14 18 18 C 1.42901 * 117.00091 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47252 * 179.97438 * 18 17 16 20 20 C 1.50693 * 109.47334 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00168 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00206 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99900 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99781 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47298 * 90.00460 * 24 22 20 26 26 H 1.48503 * 109.46922 * 210.00291 * 24 22 20 27 27 H 1.48503 * 109.47502 * 330.00263 * 24 22 20 28 28 C 1.38463 * 120.04630 * 359.97438 * 16 15 14 29 29 H 1.08988 * 109.47230 * 298.58545 * 1 2 3 30 30 H 1.08998 * 109.46502 * 58.58726 * 1 2 3 31 31 H 1.08996 * 109.46757 * 178.57815 * 1 2 3 32 32 H 1.08997 * 109.47021 * 181.41074 * 3 2 1 33 33 H 1.09000 * 109.47246 * 301.41223 * 3 2 1 34 34 H 1.09002 * 109.47150 * 61.41211 * 3 2 1 35 35 H 1.08996 * 110.48575 * 23.00292 * 4 2 1 36 36 H 1.09001 * 110.48251 * 145.51268 * 4 2 1 37 37 H 1.09007 * 110.75442 * 80.37392 * 5 4 2 38 38 H 1.08996 * 110.75808 * 203.55422 * 5 4 2 39 39 H 1.09003 * 110.47660 * 279.23328 * 6 5 4 40 40 H 1.09001 * 110.53419 * 156.56828 * 6 5 4 41 41 H 0.96990 * 119.99787 * 330.69203 * 9 7 2 42 42 H 1.08002 * 119.99834 * 359.97438 * 11 10 9 43 43 H 1.08002 * 120.01671 * 359.97438 * 13 12 11 44 44 H 1.08004 * 119.88980 * 180.21172 * 14 13 12 45 45 H 1.08007 * 119.86619 * 179.74483 * 15 14 13 46 46 H 1.09001 * 109.46726 * 300.00138 * 18 17 16 47 47 H 1.08998 * 109.46999 * 59.99714 * 18 17 16 48 48 H 1.09001 * 109.46928 * 300.00046 * 19 18 17 49 49 H 1.09007 * 109.46752 * 59.99919 * 19 18 17 50 50 H 0.96999 * 119.99367 * 180.02562 * 23 22 20 51 51 H 1.07996 * 120.10852 * 179.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0586 -0.7554 -1.2368 5 6 2.3283 -2.1900 -0.7190 6 6 2.8872 -1.9412 0.7047 7 6 2.0572 -0.7534 1.2338 8 1 1.2228 -1.1184 1.8329 9 7 2.9033 0.1313 2.0385 10 7 2.9945 -0.0564 3.4239 11 6 3.7435 0.7275 4.1367 12 6 3.8444 0.5262 5.5944 13 6 3.1258 -0.5006 6.2121 14 6 3.2266 -0.6886 7.5749 15 6 4.0295 0.1426 8.3345 16 6 4.7434 1.1688 7.7308 17 8 5.5304 1.9826 8.4830 18 6 5.5759 1.7238 9.8876 19 6 6.5066 2.7334 10.5624 20 6 6.5540 2.4609 12.0437 21 1 5.9783 1.6486 12.4621 22 6 7.3325 3.2487 12.8650 23 7 7.3743 3.0105 14.1577 24 14 8.3288 4.6532 12.1413 25 1 7.5110 5.8927 12.1432 26 1 9.5510 4.8653 12.9579 27 1 8.7168 4.3184 10.7475 28 6 4.6543 1.3639 6.3629 29 1 -0.3633 0.4916 0.9023 30 1 -0.3632 0.5356 -0.8771 31 1 -0.3633 -1.0273 -0.0255 32 1 3.1443 1.4263 -0.0253 33 1 1.6761 1.9623 -0.8770 34 1 1.7173 1.9472 0.9024 35 1 1.3063 -0.7696 -2.0255 36 1 2.9800 -0.2985 -1.5979 37 1 1.4033 -2.7651 -0.6751 38 1 3.0653 -2.6941 -1.3440 39 1 3.9439 -1.6777 0.6588 40 1 2.7392 -2.8198 1.3325 41 1 3.4002 0.8468 1.6122 42 1 4.2969 1.5243 3.6620 43 1 2.4944 -1.1487 5.6223 44 1 2.6733 -1.4847 8.0508 45 1 4.1011 -0.0071 9.4018 46 1 4.5739 1.8162 10.3067 47 1 5.9497 0.7144 10.0592 48 1 7.5085 2.6405 10.1432 49 1 6.1330 3.7430 10.3908 50 1 7.9216 3.5650 14.7355 51 1 5.2089 2.1622 5.8922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782285536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:15 Heat of formation + Delta-G solvation = 10.998122 kcal Electronic energy + Delta-G solvation = -26642.366036 eV Core-core repulsion = 22928.104273 eV Total energy + Delta-G solvation = -3714.261763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.00194 -39.73535 -37.57623 -36.12043 -33.35112 -32.71531 -32.46383 -31.14157 -30.21765 -29.15537 -28.06584 -26.81814 -25.35876 -24.68617 -23.17257 -22.31900 -21.18075 -20.85961 -20.03220 -19.16268 -17.81744 -17.12392 -16.68809 -16.23374 -15.66484 -15.63734 -15.41842 -15.09144 -14.95247 -14.38653 -14.04389 -14.00278 -13.66880 -13.39950 -13.35137 -13.25244 -13.04118 -12.81372 -12.59644 -12.48063 -12.27591 -11.95007 -11.62469 -11.53163 -11.46899 -11.43777 -11.14617 -11.05488 -11.02796 -10.93461 -10.80020 -10.74105 -10.20981 -10.15052 -9.98548 -9.81127 -9.34003 -9.15857 -8.62172 -8.02938 -7.64818 -6.13315 -4.14155 0.95943 1.67508 2.56625 2.62968 3.28732 3.36018 3.41422 3.76746 3.95471 4.05465 4.12310 4.29551 4.39290 4.69835 4.73992 4.82842 4.86229 4.87746 4.97880 5.05077 5.14557 5.19007 5.20904 5.23403 5.27053 5.35957 5.37433 5.42598 5.46258 5.49048 5.58394 5.59751 5.61520 5.65259 5.75491 5.80779 5.88839 5.91182 5.93700 5.95892 6.10469 6.17767 6.43117 6.55298 6.66557 6.67582 6.89751 6.96564 7.11471 7.23910 7.62983 7.93112 8.23459 8.39068 8.87605 9.47040 10.99202 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.001623 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.272771 B =17243.568140 C =17715.496188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.142 4.142 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.140 4.140 7 C 0.190 3.810 8 H 0.085 0.915 9 N -0.655 5.655 10 N -0.221 5.221 11 C 0.063 3.937 12 C -0.005 4.005 13 C -0.138 4.138 14 C -0.083 4.083 15 C -0.202 4.202 16 C 0.142 3.858 17 O -0.320 6.320 18 C 0.072 3.928 19 C -0.009 4.009 20 C -0.527 4.527 21 H 0.075 0.925 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 C -0.142 4.142 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.378 0.622 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.132 0.868 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.028 0.972 49 H 0.023 0.977 50 H 0.266 0.734 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 -8.351 -32.276 35.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C -0.200 4.200 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.179 4.179 7 C 0.084 3.916 8 H 0.103 0.897 9 N -0.394 5.394 10 N -0.028 5.028 11 C -0.148 4.148 12 C -0.007 4.007 13 C -0.158 4.158 14 C -0.102 4.102 15 C -0.222 4.222 16 C 0.095 3.905 17 O -0.234 6.234 18 C -0.002 4.002 19 C -0.046 4.046 20 C -0.565 4.565 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.536 5.536 24 Si 0.707 3.293 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.187 1.187 28 C -0.163 4.163 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.218 0.782 42 H 0.126 0.874 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.150 0.850 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.046 0.954 49 H 0.042 0.958 50 H 0.075 0.925 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.407 -9.012 -32.262 36.080 hybrid contribution 1.234 1.572 -0.330 2.025 sum -12.173 -7.441 -32.592 35.577 Atomic orbital electron populations 1.21886 0.93513 1.02042 1.02052 1.21453 0.96209 0.95588 0.94630 1.21854 1.00408 0.95400 1.02289 1.22485 1.00965 0.95342 0.96499 1.22467 1.01024 0.96625 0.96155 1.22938 1.00227 0.98640 0.96090 1.21312 0.92127 0.88472 0.89731 0.89669 1.48401 1.53745 1.37060 1.00219 1.74084 1.14968 1.21215 0.92536 1.23807 0.99618 0.98297 0.93075 1.17980 0.97220 0.95857 0.89637 1.21101 1.01339 0.98907 0.94460 1.20867 0.97377 0.98284 0.93634 1.21505 1.01519 0.98010 1.01187 1.18925 0.90550 0.89958 0.91046 1.86119 1.62105 1.52957 1.22174 1.23077 1.00986 1.00929 0.75178 1.19583 0.94803 0.94367 0.95894 1.20850 1.29120 1.17337 0.89199 0.90728 1.24933 0.96111 0.97314 0.94645 1.69896 1.40312 1.39777 1.03585 0.86758 0.79971 0.82727 0.79811 1.20078 1.21192 1.18739 1.20351 1.02895 1.02097 0.90989 0.92388 0.92354 0.92259 0.92706 0.92216 0.92019 0.91307 0.91439 0.91312 0.91433 0.91303 0.91264 0.78164 0.87428 0.85539 0.85908 0.85038 0.92484 0.92465 0.95410 0.95843 0.92462 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.15 37.16 0.30 -0.43 16 2 C -0.08 -0.44 0.94 -153.38 -0.14 -0.59 16 3 C -0.14 -0.80 7.07 37.16 0.26 -0.53 16 4 C -0.12 -0.57 5.91 -25.07 -0.15 -0.72 16 5 C -0.12 -0.66 6.91 -24.70 -0.17 -0.83 16 6 C -0.14 -0.98 6.54 -25.04 -0.16 -1.14 16 7 C 0.19 1.42 3.56 -66.81 -0.24 1.18 16 8 H 0.09 0.73 7.67 -51.93 -0.40 0.33 16 9 N -0.66 -5.83 5.43 -3.94 -0.02 -5.85 16 10 N -0.22 -2.49 10.61 32.16 0.34 -2.15 16 11 C 0.06 0.71 10.75 -14.66 -0.16 0.55 16 12 C 0.00 -0.06 5.87 -105.07 -0.62 -0.68 16 13 C -0.14 -1.77 9.58 -39.14 -0.37 -2.14 16 14 C -0.08 -1.09 10.02 -39.67 -0.40 -1.49 16 15 C -0.20 -3.07 9.03 -39.34 -0.36 -3.43 16 16 C 0.14 2.35 6.68 -39.28 -0.26 2.09 16 17 O -0.32 -6.17 10.13 -19.47 -0.20 -6.37 16 18 C 0.07 1.48 4.68 37.16 0.17 1.65 16 19 C -0.01 -0.22 4.41 -27.89 -0.12 -0.34 16 20 C -0.53 -14.82 9.66 -34.44 -0.33 -15.15 16 21 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 24 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 28 C -0.14 -2.04 9.73 -39.00 -0.38 -2.41 16 29 H 0.06 0.36 8.14 -51.94 -0.42 -0.07 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.29 6.87 -51.93 -0.36 -0.07 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.41 7.76 -51.93 -0.40 0.01 16 35 H 0.07 0.30 7.84 -51.93 -0.41 -0.11 16 36 H 0.07 0.34 7.83 -51.93 -0.41 -0.07 16 37 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.38 2.94 5.97 -182.61 -1.09 1.85 16 42 H 0.11 1.00 8.02 -52.49 -0.42 0.58 16 43 H 0.13 1.50 7.55 -52.49 -0.40 1.10 16 44 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.13 1.97 6.28 -52.48 -0.33 1.64 16 46 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 47 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 48 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 49 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 50 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 406.64 15.07 6.13 6.13 Total: -1.00 -30.53 406.64 -10.45 -40.98 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -9.58 Total: -0.73 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -3.22 Total: -22.42 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 1.09 Total: -34.44 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.20 Total: -6.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.53 -10.45 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782285536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.973 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds