Wall clock time and date at job start Tue Mar 31 2020 15:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.05304 * 2 1 4 4 C 1.54266 * 110.03705 * 238.58424 * 2 1 3 5 5 C 1.54884 * 104.19167 * 264.32247 * 4 2 1 6 6 C 1.54959 * 102.78277 * 322.08505 * 5 4 2 7 7 C 1.53877 * 110.03358 * 121.41111 * 2 1 3 8 8 H 1.09007 * 110.02456 * 359.95846 * 7 2 1 9 9 N 1.46499 * 110.03565 * 238.57488 * 7 2 1 10 10 N 1.40101 * 119.99542 * 150.68759 * 9 7 2 11 11 C 1.29750 * 119.99483 * 180.02562 * 10 9 7 12 12 C 1.47497 * 119.99594 * 180.27868 * 11 10 9 13 13 C 1.39724 * 120.13235 * 359.45234 * 12 11 10 14 14 C 1.37939 * 119.95242 * 179.76887 * 13 12 11 15 15 C 1.38301 * 120.21504 * 0.47996 * 14 13 12 16 16 C 1.38827 * 120.25955 * 359.77126 * 15 14 13 17 17 O 1.35913 * 119.97566 * 179.97438 * 16 15 14 18 18 C 1.42901 * 117.00091 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47252 * 179.97438 * 18 17 16 20 20 C 1.50693 * 109.47334 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00168 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00206 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99900 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99781 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47298 * 90.00460 * 24 22 20 26 26 H 1.48503 * 109.46922 * 210.00291 * 24 22 20 27 27 H 1.48503 * 109.47502 * 330.00263 * 24 22 20 28 28 C 1.38463 * 120.04630 * 359.97438 * 16 15 14 29 29 H 1.08988 * 109.47230 * 298.58545 * 1 2 3 30 30 H 1.08998 * 109.46502 * 58.58726 * 1 2 3 31 31 H 1.08996 * 109.46757 * 178.57815 * 1 2 3 32 32 H 1.08997 * 109.47021 * 181.41074 * 3 2 1 33 33 H 1.09000 * 109.47246 * 301.41223 * 3 2 1 34 34 H 1.09002 * 109.47150 * 61.41211 * 3 2 1 35 35 H 1.08996 * 110.48575 * 23.00292 * 4 2 1 36 36 H 1.09001 * 110.48251 * 145.51268 * 4 2 1 37 37 H 1.09007 * 110.75442 * 80.37392 * 5 4 2 38 38 H 1.08996 * 110.75808 * 203.55422 * 5 4 2 39 39 H 1.09003 * 110.47660 * 279.23328 * 6 5 4 40 40 H 1.09001 * 110.53419 * 156.56828 * 6 5 4 41 41 H 0.96990 * 119.99787 * 330.69203 * 9 7 2 42 42 H 1.08002 * 119.99834 * 359.97438 * 11 10 9 43 43 H 1.08002 * 120.01671 * 359.97438 * 13 12 11 44 44 H 1.08004 * 119.88980 * 180.21172 * 14 13 12 45 45 H 1.08007 * 119.86619 * 179.74483 * 15 14 13 46 46 H 1.09001 * 109.46726 * 300.00138 * 18 17 16 47 47 H 1.08998 * 109.46999 * 59.99714 * 18 17 16 48 48 H 1.09001 * 109.46928 * 300.00046 * 19 18 17 49 49 H 1.09007 * 109.46752 * 59.99919 * 19 18 17 50 50 H 0.96999 * 119.99367 * 180.02562 * 23 22 20 51 51 H 1.07996 * 120.10852 * 179.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0586 -0.7554 -1.2368 5 6 2.3283 -2.1900 -0.7190 6 6 2.8872 -1.9412 0.7047 7 6 2.0572 -0.7534 1.2338 8 1 1.2228 -1.1184 1.8329 9 7 2.9033 0.1313 2.0385 10 7 2.9945 -0.0564 3.4239 11 6 3.7435 0.7275 4.1367 12 6 3.8444 0.5262 5.5944 13 6 3.1258 -0.5006 6.2121 14 6 3.2266 -0.6886 7.5749 15 6 4.0295 0.1426 8.3345 16 6 4.7434 1.1688 7.7308 17 8 5.5304 1.9826 8.4830 18 6 5.5759 1.7238 9.8876 19 6 6.5066 2.7334 10.5624 20 6 6.5540 2.4609 12.0437 21 1 5.9783 1.6486 12.4621 22 6 7.3325 3.2487 12.8650 23 7 7.3743 3.0105 14.1577 24 14 8.3288 4.6532 12.1413 25 1 7.5110 5.8927 12.1432 26 1 9.5510 4.8653 12.9579 27 1 8.7168 4.3184 10.7475 28 6 4.6543 1.3639 6.3629 29 1 -0.3633 0.4916 0.9023 30 1 -0.3632 0.5356 -0.8771 31 1 -0.3633 -1.0273 -0.0255 32 1 3.1443 1.4263 -0.0253 33 1 1.6761 1.9623 -0.8770 34 1 1.7173 1.9472 0.9024 35 1 1.3063 -0.7696 -2.0255 36 1 2.9800 -0.2985 -1.5979 37 1 1.4033 -2.7651 -0.6751 38 1 3.0653 -2.6941 -1.3440 39 1 3.9439 -1.6777 0.6588 40 1 2.7392 -2.8198 1.3325 41 1 3.4002 0.8468 1.6122 42 1 4.2969 1.5243 3.6620 43 1 2.4944 -1.1487 5.6223 44 1 2.6733 -1.4847 8.0508 45 1 4.1011 -0.0071 9.4018 46 1 4.5739 1.8162 10.3067 47 1 5.9497 0.7144 10.0592 48 1 7.5085 2.6405 10.1432 49 1 6.1330 3.7430 10.3908 50 1 7.9216 3.5650 14.7355 51 1 5.2089 2.1622 5.8922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782285536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:14 Heat of formation + Delta-G solvation = -3.974436 kcal Electronic energy + Delta-G solvation = -26643.015294 eV Core-core repulsion = 22928.104273 eV Total energy + Delta-G solvation = -3714.911021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.00273 -40.50273 -38.75898 -37.02575 -35.39351 -33.33562 -33.16767 -32.91187 -31.33997 -30.29576 -28.51900 -27.51640 -27.06496 -25.30814 -24.25646 -23.43999 -22.56669 -21.60522 -21.21969 -19.79763 -19.22232 -18.46114 -17.92143 -16.95063 -16.92341 -16.86961 -16.53310 -16.16558 -15.99729 -15.57526 -15.16606 -14.81350 -14.56689 -14.45480 -14.38141 -14.21817 -14.05304 -13.89500 -13.78191 -13.28133 -13.17212 -13.04440 -12.78421 -12.56163 -12.54718 -12.31895 -12.16570 -11.99845 -11.95302 -11.79340 -11.70953 -11.56640 -11.50207 -11.45390 -11.40515 -11.38146 -11.00548 -10.80479 -10.12736 -9.18318 -8.54552 -8.33932 -6.40601 -0.06735 0.55425 1.37053 1.38508 1.51248 1.60792 1.86149 2.34232 2.39904 2.97645 3.01246 3.46052 3.65258 3.78355 3.85914 3.93494 4.14446 4.24940 4.25718 4.28083 4.35750 4.36506 4.38080 4.38913 4.42444 4.52936 4.58051 4.62155 4.69541 4.74462 4.76753 4.83578 4.94055 4.99692 5.03111 5.06579 5.09842 5.14444 5.20101 5.20375 5.32318 5.32625 5.35171 5.39994 5.44660 5.48125 5.51759 5.57845 5.68323 5.88076 6.17429 6.27995 6.54559 6.65301 7.24625 7.45172 8.81755 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.001623 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.272771 B =17243.568140 C =17715.496188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.138 4.138 7 C 0.185 3.815 8 H 0.074 0.926 9 N -0.648 5.648 10 N -0.231 5.231 11 C 0.052 3.948 12 C 0.000 4.000 13 C -0.136 4.136 14 C -0.080 4.080 15 C -0.216 4.216 16 C 0.111 3.889 17 O -0.333 6.333 18 C 0.086 3.914 19 C -0.006 4.006 20 C -0.538 4.538 21 H 0.042 0.958 22 C 0.014 3.986 23 N -0.943 5.943 24 Si 0.949 3.051 25 H -0.265 1.265 26 H -0.280 1.280 27 H -0.250 1.250 28 C -0.144 4.144 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.385 0.615 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.127 0.873 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.270 0.730 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.274 -8.088 -35.554 38.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C -0.198 4.198 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.178 4.178 7 C 0.079 3.921 8 H 0.092 0.908 9 N -0.388 5.388 10 N -0.039 5.039 11 C -0.158 4.158 12 C -0.002 4.002 13 C -0.156 4.156 14 C -0.098 4.098 15 C -0.236 4.236 16 C 0.066 3.934 17 O -0.248 6.248 18 C 0.012 3.988 19 C -0.044 4.044 20 C -0.576 4.576 21 H 0.060 0.940 22 C -0.185 4.185 23 N -0.582 5.582 24 Si 0.772 3.228 25 H -0.190 1.190 26 H -0.205 1.205 27 H -0.173 1.173 28 C -0.165 4.165 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.226 0.774 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.145 0.855 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.079 0.921 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.826 -8.762 -35.569 39.154 hybrid contribution 1.221 1.344 0.568 1.902 sum -12.604 -7.418 -35.000 37.933 Atomic orbital electron populations 1.21879 0.93151 1.02368 1.01968 1.21435 0.96440 0.95549 0.94054 1.21837 1.00625 0.95198 1.02151 1.22472 1.01378 0.94782 0.96248 1.22455 1.01367 0.97083 0.94912 1.22891 0.99643 0.98015 0.97224 1.21462 0.91696 0.88816 0.90082 0.90822 1.48509 1.53627 1.37296 0.99375 1.73989 1.14672 1.21344 0.93862 1.23737 1.00581 0.99295 0.92217 1.18150 0.96257 0.95183 0.90656 1.21334 1.01009 0.98799 0.94503 1.21127 0.96690 0.98254 0.93726 1.21578 1.02273 0.98454 1.01256 1.19204 0.91658 0.90813 0.91712 1.86029 1.63461 1.54125 1.21152 1.22672 1.00135 0.99724 0.76317 1.19444 0.95759 0.95550 0.93644 1.21134 1.28490 1.16380 0.91556 0.93980 1.25879 0.97383 1.00267 0.94925 1.70031 1.41619 1.41391 1.05177 0.85679 0.78410 0.79199 0.79550 1.18974 1.20520 1.17317 1.20498 1.03156 1.02670 0.90168 0.93511 0.91328 0.91826 0.92374 0.91232 0.93218 0.90153 0.91222 0.90706 0.90790 0.92187 0.92063 0.77375 0.85564 0.84348 0.83412 0.85534 0.92350 0.92383 0.95357 0.95449 0.92135 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.15 71.98 0.59 -0.63 16 2 C -0.07 -0.70 0.94 -51.45 -0.05 -0.75 16 3 C -0.14 -1.31 7.07 71.98 0.51 -0.80 16 4 C -0.11 -0.83 5.91 31.67 0.19 -0.64 16 5 C -0.12 -1.02 6.91 31.91 0.22 -0.80 16 6 C -0.14 -1.76 6.54 31.69 0.21 -1.55 16 7 C 0.18 2.52 3.56 45.72 0.16 2.69 16 8 H 0.07 1.19 7.67 -2.38 -0.02 1.17 16 9 N -0.65 -10.58 5.43 -166.37 -0.90 -11.49 16 10 N -0.23 -4.84 10.61 -52.16 -0.55 -5.40 16 11 C 0.05 1.09 10.75 87.44 0.94 2.03 16 12 C 0.00 0.00 5.87 -20.15 -0.12 -0.12 16 13 C -0.14 -3.29 9.58 22.56 0.22 -3.07 16 14 C -0.08 -1.99 10.02 22.21 0.22 -1.77 16 15 C -0.22 -6.51 9.03 22.43 0.20 -6.30 16 16 C 0.11 3.68 6.68 22.46 0.15 3.83 16 17 O -0.33 -12.85 10.13 -92.57 -0.94 -13.79 16 18 C 0.09 3.56 4.68 71.98 0.34 3.90 16 19 C -0.01 -0.31 4.41 29.84 0.13 -0.18 16 20 C -0.54 -30.91 9.66 25.60 0.25 -30.66 16 21 H 0.04 2.61 7.99 -2.91 -0.02 2.59 16 22 C 0.01 0.79 5.47 84.66 0.46 1.25 16 23 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 24 Si 0.95 44.17 27.47 68.60 1.88 46.05 16 25 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.25 -11.00 6.54 99.48 0.65 -10.34 16 28 C -0.14 -3.99 9.73 22.65 0.22 -3.77 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.50 6.87 -2.39 -0.02 0.48 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.59 7.76 -2.39 -0.02 0.57 16 35 H 0.08 0.45 7.84 -2.39 -0.02 0.44 16 36 H 0.07 0.52 7.83 -2.39 -0.02 0.50 16 37 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.87 8.05 -2.39 -0.02 0.85 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 41 H 0.38 5.32 5.97 -213.33 -1.27 4.05 16 42 H 0.13 2.10 8.02 -2.91 -0.02 2.08 16 43 H 0.14 3.02 7.55 -2.91 -0.02 2.99 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.13 3.85 6.28 -2.91 -0.02 3.84 16 46 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 47 H 0.06 2.34 7.66 -2.39 -0.02 2.33 16 48 H 0.03 1.35 7.20 -2.39 -0.02 1.34 16 49 H 0.03 1.29 7.57 -2.38 -0.02 1.27 16 50 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 51 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -65.92 406.64 4.19 -61.72 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.43 Total: 18.31 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.84 Total: -37.36 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -1.16 Total: -74.93 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.94 Total: -13.79 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -65.92 4.19 -61.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782285536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.747 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds