Wall clock time and date at job start Tue Mar 31 2020 16:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.57178 * 2 1 4 4 C 1.38235 * 119.99725 * 355.16220 * 3 2 1 5 5 C 1.38236 * 119.99984 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99907 * 0.02562 * 5 4 3 7 7 C 1.38232 * 119.99733 * 0.26174 * 6 5 4 8 8 C 1.38232 * 120.00121 * 359.46399 * 7 6 5 9 9 C 1.54527 * 109.57227 * 120.24686 * 2 1 3 10 10 C 1.45869 * 111.67095 * 42.71556 * 9 2 1 11 11 C 1.53985 * 112.67380 * 61.49335 * 10 9 2 12 12 N 1.44298 * 108.30991 * 278.59674 * 11 10 9 13 13 C 1.46900 * 110.99820 * 221.34084 * 12 11 10 14 14 C 1.50695 * 109.47603 * 293.95757 * 13 12 11 15 15 O 1.21291 * 119.99746 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00311 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99856 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47055 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99743 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00211 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99953 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00193 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47433 * 120.00089 * 22 20 18 25 25 H 1.48503 * 109.47284 * 240.00244 * 22 20 18 26 26 C 1.47941 * 113.64134 * 95.39691 * 12 11 10 27 27 C 1.50535 * 109.67856 * 239.68754 * 2 1 3 28 28 H 1.09002 * 109.46855 * 60.00425 * 1 2 3 29 29 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47556 * 300.00071 * 1 2 3 31 31 H 1.08004 * 120.00449 * 359.97151 * 4 3 2 32 32 H 1.08002 * 119.99776 * 179.97438 * 5 4 3 33 33 H 1.07992 * 119.99661 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.99648 * 179.72441 * 7 6 5 35 35 H 1.08004 * 120.00214 * 180.30595 * 8 7 6 36 36 H 1.09002 * 109.03729 * 163.27981 * 9 2 1 37 37 H 1.09000 * 109.03847 * 282.22041 * 9 2 1 38 38 H 1.09004 * 108.84585 * 182.32113 * 10 9 2 39 39 H 1.09006 * 108.84391 * 300.67082 * 10 9 2 40 40 H 1.09000 * 109.69222 * 38.30214 * 11 10 9 41 41 H 1.08999 * 109.69576 * 158.88830 * 11 10 9 42 42 H 1.09003 * 109.46979 * 53.96011 * 13 12 11 43 43 H 1.08997 * 109.47036 * 173.95373 * 13 12 11 44 44 H 0.97001 * 119.99585 * 359.97438 * 16 14 13 45 45 H 1.08989 * 109.47444 * 300.00030 * 17 16 14 46 46 H 1.09008 * 109.46903 * 60.00235 * 17 16 14 47 47 H 0.97006 * 119.99714 * 180.02562 * 21 20 18 48 48 H 1.09000 * 108.71149 * 79.12983 * 26 12 11 49 49 H 1.09006 * 108.71353 * 197.13912 * 26 12 11 50 50 H 1.09006 * 108.78856 * 92.76819 * 27 2 1 51 51 H 1.09003 * 108.78856 * 210.98144 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4200 0.0000 4 6 1.1423 2.4708 -0.1010 5 6 1.6053 3.7733 -0.1004 6 6 2.9609 4.0250 0.0005 7 6 3.8537 2.9740 0.0955 8 6 3.3903 1.6717 0.1007 9 6 2.0476 -0.7334 1.2578 10 6 1.2896 -1.9515 1.5212 11 6 1.3948 -2.9755 0.3760 12 7 0.4588 -2.5992 -0.6559 13 6 -0.2263 -3.7789 -1.2007 14 6 0.7700 -4.6506 -1.9208 15 8 1.9362 -4.3217 -1.9745 16 7 0.3653 -5.7961 -2.5044 17 6 1.3338 -6.6431 -3.2049 18 6 0.6312 -7.8540 -3.7627 19 1 -0.4307 -7.9798 -3.6109 20 6 1.3439 -8.8012 -4.4667 21 7 2.6370 -8.6483 -4.6511 22 14 0.4728 -10.3018 -5.1587 23 1 -0.9706 -10.2385 -4.8154 24 1 0.6303 -10.3287 -6.6351 25 1 1.0663 -11.5317 -4.5751 26 6 1.0619 -1.7898 -1.7374 27 6 2.0369 -0.7154 -1.2237 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.0833 2.2742 -0.1803 32 1 0.9080 4.5943 -0.1797 33 1 3.3225 5.0426 0.0005 34 1 4.9131 3.1705 0.1699 35 1 4.0875 0.8507 0.1799 36 1 3.0966 -0.9917 1.1123 37 1 1.9612 -0.0690 2.1176 38 1 1.6644 -2.4082 2.4373 39 1 0.2412 -1.6898 1.6643 40 1 2.4073 -2.9725 -0.0276 41 1 1.1503 -3.9701 0.7489 42 1 -0.6811 -4.3432 -0.3866 43 1 -1.0006 -3.4595 -1.8982 44 1 -0.5672 -6.0596 -2.4605 45 1 1.7879 -6.0789 -4.0194 46 1 2.1087 -6.9621 -2.5077 47 1 3.1384 -9.3146 -5.1468 48 1 1.5991 -2.4548 -2.4138 49 1 0.2633 -1.2997 -2.2943 50 1 2.2020 0.0161 -2.0148 51 1 2.9882 -1.1905 -0.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796201610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:45 Heat of formation + Delta-G solvation = -5.262284 kcal Electronic energy + Delta-G solvation = -28848.251735 eV Core-core repulsion = 25133.284868 eV Total energy + Delta-G solvation = -3714.966867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.81040 -39.38234 -37.99439 -35.16744 -34.09553 -32.78367 -32.39350 -31.16429 -30.51068 -28.62204 -27.70932 -26.60031 -25.10424 -24.33573 -22.40601 -22.38634 -21.79969 -20.18484 -19.55356 -18.51813 -17.30398 -17.12337 -16.14686 -15.89519 -15.77791 -15.16953 -15.08060 -14.96976 -14.72066 -14.33149 -14.16803 -13.68933 -13.52333 -13.40033 -13.39158 -13.02574 -12.80324 -12.63587 -12.18531 -12.05509 -11.94466 -11.64979 -11.48647 -11.43341 -11.15337 -11.02712 -10.96947 -10.92272 -10.79527 -10.62744 -10.37059 -10.34390 -10.28665 -10.17357 -9.52208 -9.41739 -9.02088 -8.78144 -8.75039 -7.94306 -7.73467 -6.20531 -4.27668 1.27271 1.29881 3.20588 3.27772 3.27897 3.30812 3.68571 3.99050 4.10111 4.35158 4.53938 4.62673 4.84583 4.87338 4.93647 5.00285 5.15589 5.19249 5.26642 5.29357 5.38472 5.40087 5.49549 5.49622 5.52629 5.56280 5.66205 5.70238 5.88867 5.89545 5.94555 5.95741 6.00406 6.07186 6.14113 6.15448 6.26925 6.29961 6.39029 6.40620 6.43423 6.52153 6.62663 6.80997 6.92187 7.11954 7.26836 7.32249 7.39403 7.46700 7.62545 7.92994 8.57284 8.73134 9.03953 9.39284 10.89571 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.002201 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.083186 B =12720.310192 C =12990.751417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.011 4.011 3 C -0.063 4.063 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.132 4.132 7 C -0.121 4.121 8 C -0.117 4.117 9 C -0.098 4.098 10 C -0.118 4.118 11 C 0.061 3.939 12 N -0.514 5.514 13 C 0.031 3.969 14 C 0.465 3.535 15 O -0.554 6.554 16 N -0.711 5.711 17 C 0.249 3.751 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.047 3.953 27 C -0.101 4.101 28 H 0.045 0.955 29 H 0.120 0.880 30 H 0.040 0.960 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.391 0.609 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.265 0.735 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 21.584 11.858 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 C -0.063 4.063 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.150 4.150 7 C -0.139 4.139 8 C -0.135 4.135 9 C -0.136 4.136 10 C -0.156 4.156 11 C -0.067 4.067 12 N -0.237 5.237 13 C -0.101 4.101 14 C 0.249 3.751 15 O -0.435 6.435 16 N -0.359 5.359 17 C 0.128 3.872 18 C -0.582 4.582 19 H 0.082 0.918 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.080 4.080 27 C -0.139 4.139 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.223 0.777 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.783 21.995 11.934 25.308 hybrid contribution -0.056 -1.385 -0.873 1.638 sum -3.839 20.610 11.061 23.704 Atomic orbital electron populations 1.22542 0.93480 1.06547 0.99757 1.19247 0.96774 0.89721 0.95388 1.20045 0.93187 0.95278 0.97752 1.21240 1.00098 0.92088 1.00348 1.21146 0.95601 0.96759 1.00519 1.21096 0.93589 0.98820 1.01464 1.21124 0.99463 0.92870 1.00433 1.21058 0.95344 0.96666 1.00401 1.20600 0.99551 0.96660 0.96767 1.20563 1.01755 0.95590 0.97647 1.21797 0.96350 0.97051 0.91510 1.61300 1.31905 1.17861 1.12587 1.22406 0.96616 0.91100 0.99983 1.21755 0.90208 0.82731 0.80446 1.90617 1.19022 1.72329 1.61523 1.46603 1.13200 1.22186 1.53927 1.19077 0.87981 0.88398 0.91705 1.21268 0.95263 1.05804 1.35818 0.91847 1.24966 0.94864 0.98463 0.95806 1.69986 1.06608 1.35504 1.40192 0.86359 0.79618 0.82167 0.78762 1.19604 1.20778 1.20791 1.22554 0.97228 0.94867 0.93340 1.21392 0.98861 0.96812 0.96855 0.93641 0.86265 0.94082 0.85582 0.86457 0.86570 0.86418 0.86257 0.92518 0.92517 0.92500 0.90799 0.92230 0.91913 0.88193 0.88355 0.77685 0.95712 0.95703 0.92497 0.90970 0.91845 0.91764 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 5.28 37.16 0.20 -1.50 16 2 C -0.01 -0.12 0.60 -156.09 -0.09 -0.21 16 3 C -0.06 -0.67 4.44 -104.62 -0.47 -1.14 16 4 C -0.12 -1.21 8.99 -39.58 -0.36 -1.57 16 5 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 7 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 8 C -0.12 -1.22 8.97 -39.59 -0.35 -1.58 16 9 C -0.10 -1.04 3.99 -29.30 -0.12 -1.15 16 10 C -0.12 -1.25 5.16 -29.59 -0.15 -1.41 16 11 C 0.06 0.81 4.21 -4.70 -0.02 0.79 16 12 N -0.51 -6.49 2.07 -236.09 -0.49 -6.98 16 13 C 0.03 0.40 5.63 -4.98 -0.03 0.37 16 14 C 0.46 8.55 7.10 -10.99 -0.08 8.47 16 15 O -0.55 -12.21 12.55 5.55 0.07 -12.14 16 16 N -0.71 -14.29 5.55 -61.47 -0.34 -14.64 16 17 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 18 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 19 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 22 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.05 0.63 4.27 -2.77 -0.01 0.62 16 27 C -0.10 -1.25 4.42 -27.49 -0.12 -1.37 16 28 H 0.04 0.46 7.28 -51.93 -0.38 0.08 16 29 H 0.12 1.30 3.81 -51.93 -0.20 1.10 16 30 H 0.04 0.39 7.75 -51.93 -0.40 -0.01 16 31 H 0.13 1.15 5.92 -52.48 -0.31 0.84 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 1.19 7.64 -52.48 -0.40 0.78 16 36 H 0.06 0.62 7.24 -51.93 -0.38 0.24 16 37 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.76 6.37 -51.93 -0.33 0.43 16 40 H 0.06 0.94 6.12 -51.93 -0.32 0.62 16 41 H 0.06 0.85 7.43 -51.93 -0.39 0.47 16 42 H 0.10 1.11 7.91 -51.93 -0.41 0.70 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 45 H 0.02 0.72 8.14 -51.94 -0.42 0.30 16 46 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 47 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.07 1.24 5.29 -51.93 -0.27 0.97 16 49 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 50 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 51 H 0.06 0.83 6.66 -51.93 -0.35 0.48 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -30.78 381.72 -10.73 -41.50 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.19 Total: 7.18 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.24 Total: -11.13 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.85 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.78 -10.73 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796201610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.240 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds