Wall clock time and date at job start Tue Mar 31 2020 16:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.57178 * 2 1 4 4 C 1.38235 * 119.99725 * 355.16220 * 3 2 1 5 5 C 1.38236 * 119.99984 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99907 * 0.02562 * 5 4 3 7 7 C 1.38232 * 119.99733 * 0.26174 * 6 5 4 8 8 C 1.38232 * 120.00121 * 359.46399 * 7 6 5 9 9 C 1.54527 * 109.57227 * 120.24686 * 2 1 3 10 10 C 1.45869 * 111.67095 * 42.71556 * 9 2 1 11 11 C 1.53985 * 112.67380 * 61.49335 * 10 9 2 12 12 N 1.44298 * 108.30991 * 278.59674 * 11 10 9 13 13 C 1.46900 * 110.99820 * 221.34084 * 12 11 10 14 14 C 1.50695 * 109.47603 * 293.95757 * 13 12 11 15 15 O 1.21291 * 119.99746 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00311 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99856 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47055 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99743 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00211 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99953 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00193 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47433 * 120.00089 * 22 20 18 25 25 H 1.48503 * 109.47284 * 240.00244 * 22 20 18 26 26 C 1.47941 * 113.64134 * 95.39691 * 12 11 10 27 27 C 1.50535 * 109.67856 * 239.68754 * 2 1 3 28 28 H 1.09002 * 109.46855 * 60.00425 * 1 2 3 29 29 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47556 * 300.00071 * 1 2 3 31 31 H 1.08004 * 120.00449 * 359.97151 * 4 3 2 32 32 H 1.08002 * 119.99776 * 179.97438 * 5 4 3 33 33 H 1.07992 * 119.99661 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.99648 * 179.72441 * 7 6 5 35 35 H 1.08004 * 120.00214 * 180.30595 * 8 7 6 36 36 H 1.09002 * 109.03729 * 163.27981 * 9 2 1 37 37 H 1.09000 * 109.03847 * 282.22041 * 9 2 1 38 38 H 1.09004 * 108.84585 * 182.32113 * 10 9 2 39 39 H 1.09006 * 108.84391 * 300.67082 * 10 9 2 40 40 H 1.09000 * 109.69222 * 38.30214 * 11 10 9 41 41 H 1.08999 * 109.69576 * 158.88830 * 11 10 9 42 42 H 1.09003 * 109.46979 * 53.96011 * 13 12 11 43 43 H 1.08997 * 109.47036 * 173.95373 * 13 12 11 44 44 H 0.97001 * 119.99585 * 359.97438 * 16 14 13 45 45 H 1.08989 * 109.47444 * 300.00030 * 17 16 14 46 46 H 1.09008 * 109.46903 * 60.00235 * 17 16 14 47 47 H 0.97006 * 119.99714 * 180.02562 * 21 20 18 48 48 H 1.09000 * 108.71149 * 79.12983 * 26 12 11 49 49 H 1.09006 * 108.71353 * 197.13912 * 26 12 11 50 50 H 1.09006 * 108.78856 * 92.76819 * 27 2 1 51 51 H 1.09003 * 108.78856 * 210.98144 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4200 0.0000 4 6 1.1423 2.4708 -0.1010 5 6 1.6053 3.7733 -0.1004 6 6 2.9609 4.0250 0.0005 7 6 3.8537 2.9740 0.0955 8 6 3.3903 1.6717 0.1007 9 6 2.0476 -0.7334 1.2578 10 6 1.2896 -1.9515 1.5212 11 6 1.3948 -2.9755 0.3760 12 7 0.4588 -2.5992 -0.6559 13 6 -0.2263 -3.7789 -1.2007 14 6 0.7700 -4.6506 -1.9208 15 8 1.9362 -4.3217 -1.9745 16 7 0.3653 -5.7961 -2.5044 17 6 1.3338 -6.6431 -3.2049 18 6 0.6312 -7.8540 -3.7627 19 1 -0.4307 -7.9798 -3.6109 20 6 1.3439 -8.8012 -4.4667 21 7 2.6370 -8.6483 -4.6511 22 14 0.4728 -10.3018 -5.1587 23 1 -0.9706 -10.2385 -4.8154 24 1 0.6303 -10.3287 -6.6351 25 1 1.0663 -11.5317 -4.5751 26 6 1.0619 -1.7898 -1.7374 27 6 2.0369 -0.7154 -1.2237 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.0833 2.2742 -0.1803 32 1 0.9080 4.5943 -0.1797 33 1 3.3225 5.0426 0.0005 34 1 4.9131 3.1705 0.1699 35 1 4.0875 0.8507 0.1799 36 1 3.0966 -0.9917 1.1123 37 1 1.9612 -0.0690 2.1176 38 1 1.6644 -2.4082 2.4373 39 1 0.2412 -1.6898 1.6643 40 1 2.4073 -2.9725 -0.0276 41 1 1.1503 -3.9701 0.7489 42 1 -0.6811 -4.3432 -0.3866 43 1 -1.0006 -3.4595 -1.8982 44 1 -0.5672 -6.0596 -2.4605 45 1 1.7879 -6.0789 -4.0194 46 1 2.1087 -6.9621 -2.5077 47 1 3.1384 -9.3146 -5.1468 48 1 1.5991 -2.4548 -2.4138 49 1 0.2633 -1.2997 -2.2943 50 1 2.2020 0.0161 -2.0148 51 1 2.9882 -1.1905 -0.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796201610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:44 Heat of formation + Delta-G solvation = -22.551456 kcal Electronic energy + Delta-G solvation = -28849.001450 eV Core-core repulsion = 25133.284868 eV Total energy + Delta-G solvation = -3715.716582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82309 -40.59962 -39.06642 -36.45955 -35.73888 -34.36982 -33.74184 -31.90662 -31.46962 -30.00734 -28.86317 -27.96287 -26.14765 -25.54760 -24.20267 -23.13208 -22.61094 -21.59094 -20.89401 -19.39463 -18.91513 -18.06657 -17.57664 -17.25903 -17.01742 -16.59297 -16.34737 -16.04803 -15.78155 -15.58772 -15.44575 -14.85872 -14.44863 -14.41019 -14.32382 -14.21948 -14.12953 -13.88317 -13.82695 -13.54048 -12.94661 -12.83386 -12.80982 -12.54250 -12.47602 -12.33896 -12.23487 -12.10642 -11.94079 -11.82099 -11.62510 -11.46931 -11.28227 -11.21812 -11.06243 -10.96785 -10.82733 -9.79859 -9.75552 -9.52025 -8.98390 -8.31371 -6.48287 0.52815 0.56326 1.41509 1.42396 1.56052 1.77539 2.31616 2.64892 2.89513 2.95395 3.03362 3.66268 3.76826 3.94191 4.06893 4.13982 4.15606 4.21730 4.29204 4.32465 4.34839 4.45889 4.51041 4.58300 4.64761 4.67142 4.73509 4.84393 4.89397 4.98405 5.00517 5.08915 5.10048 5.13527 5.20585 5.21729 5.22935 5.28146 5.29858 5.41352 5.46143 5.49370 5.55764 5.65510 5.68427 5.70275 5.81668 5.83820 5.93471 6.09318 6.18479 6.21599 6.64171 6.92998 7.21872 7.51967 8.80601 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.002201 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.083186 B =12720.310192 C =12990.751417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.005 4.005 3 C -0.076 4.076 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.133 4.133 9 C -0.096 4.096 10 C -0.108 4.108 11 C 0.062 3.938 12 N -0.496 5.496 13 C 0.041 3.959 14 C 0.461 3.539 15 O -0.595 6.595 16 N -0.708 5.708 17 C 0.269 3.731 18 C -0.554 4.554 19 H 0.085 0.915 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.985 3.015 23 H -0.251 1.251 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.052 3.948 27 C -0.094 4.094 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.409 0.591 45 H -0.018 1.018 46 H -0.018 1.018 47 H 0.268 0.732 48 H 0.031 0.969 49 H 0.080 0.920 50 H 0.061 0.939 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 22.650 12.827 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.005 4.005 3 C -0.076 4.076 4 C -0.146 4.146 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.134 4.134 10 C -0.146 4.146 11 C -0.067 4.067 12 N -0.217 5.217 13 C -0.090 4.090 14 C 0.247 3.753 15 O -0.477 6.477 16 N -0.359 5.359 17 C 0.145 3.855 18 C -0.592 4.592 19 H 0.103 0.897 20 C -0.199 4.199 21 N -0.571 5.571 22 Si 0.808 3.192 23 H -0.174 1.174 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.075 4.075 27 C -0.132 4.132 28 H 0.067 0.933 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.244 0.756 45 H 0.000 1.000 46 H 0.000 1.000 47 H 0.077 0.923 48 H 0.049 0.951 49 H 0.098 0.902 50 H 0.079 0.921 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.964 23.091 12.933 27.367 hybrid contribution 1.024 -1.609 -1.164 2.234 sum -5.941 21.482 11.769 25.205 Atomic orbital electron populations 1.22468 0.92484 1.06331 1.00450 1.19161 0.97408 0.89735 0.94193 1.20073 0.93442 0.95312 0.98749 1.21425 1.00525 0.92302 1.00325 1.21467 0.96176 0.97117 0.99674 1.21420 0.93614 0.99743 1.00563 1.21373 1.00551 0.92663 1.00189 1.21157 0.95502 0.97186 1.01283 1.20571 0.98877 0.96812 0.97111 1.20489 1.02611 0.94767 0.96719 1.21797 0.94575 0.97940 0.92343 1.61493 1.31225 1.17190 1.11838 1.22628 0.95345 0.90127 1.00911 1.22935 0.90741 0.82193 0.79392 1.90623 1.21488 1.73004 1.62596 1.46359 1.13092 1.22338 1.54081 1.18450 0.88348 0.88888 0.89795 1.21675 0.96274 1.05740 1.35490 0.89713 1.26099 0.95521 1.02170 0.96064 1.70152 1.08712 1.36988 1.41269 0.85108 0.79163 0.77279 0.77652 1.17446 1.20524 1.20528 1.22473 0.97455 0.94501 0.93062 1.21307 0.97693 0.96356 0.97805 0.93338 0.86713 0.93009 0.84558 0.84248 0.84391 0.85023 0.86861 0.93771 0.91564 0.91496 0.89430 0.95696 0.92220 0.85019 0.85312 0.75573 1.00011 0.99962 0.92326 0.95087 0.90169 0.92059 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 5.28 71.98 0.38 -2.53 16 2 C 0.00 -0.10 0.60 -53.21 -0.03 -0.13 16 3 C -0.08 -1.57 4.44 -19.86 -0.09 -1.66 16 4 C -0.13 -2.35 8.99 22.27 0.20 -2.15 16 5 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 6 C -0.14 -2.20 10.05 22.27 0.22 -1.97 16 7 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 8 C -0.13 -2.79 8.97 22.27 0.20 -2.59 16 9 C -0.10 -1.98 3.99 28.93 0.12 -1.86 16 10 C -0.11 -2.17 5.16 28.74 0.15 -2.02 16 11 C 0.06 1.63 4.21 87.12 0.37 2.00 16 12 N -0.50 -12.02 2.07 -900.84 -1.87 -13.89 16 13 C 0.04 0.99 5.63 85.56 0.48 1.47 16 14 C 0.46 17.25 7.10 87.66 0.62 17.88 16 15 O -0.59 -27.83 12.55 -3.06 -0.04 -27.87 16 16 N -0.71 -28.87 5.55 -466.79 -2.59 -31.46 16 17 C 0.27 14.68 5.43 85.63 0.46 15.14 16 18 C -0.55 -30.01 9.28 25.60 0.24 -29.77 16 19 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 20 C 0.00 0.04 5.46 84.65 0.46 0.51 16 21 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 22 Si 0.98 42.29 29.54 68.60 2.03 44.31 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.05 1.42 4.27 86.41 0.37 1.79 16 27 C -0.09 -2.39 4.42 30.10 0.13 -2.26 16 28 H 0.05 0.85 7.28 -2.39 -0.02 0.84 16 29 H 0.11 2.18 3.81 -2.38 -0.01 2.18 16 30 H 0.05 0.84 7.75 -2.39 -0.02 0.82 16 31 H 0.14 2.14 5.92 -2.91 -0.02 2.13 16 32 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.11 2.40 7.64 -2.91 -0.02 2.38 16 36 H 0.04 1.01 7.24 -2.39 -0.02 0.99 16 37 H 0.07 1.26 8.02 -2.39 -0.02 1.24 16 38 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.09 1.56 6.37 -2.38 -0.02 1.55 16 40 H 0.02 0.83 6.12 -2.39 -0.01 0.82 16 41 H 0.06 1.60 7.43 -2.39 -0.02 1.58 16 42 H 0.13 2.46 7.91 -2.39 -0.02 2.44 16 43 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.41 13.52 8.32 -92.71 -0.77 12.74 16 45 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 46 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 47 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 48 H 0.03 1.13 5.29 -2.39 -0.01 1.11 16 49 H 0.08 1.92 7.91 -2.38 -0.02 1.90 16 50 H 0.06 1.57 7.72 -2.38 -0.02 1.55 16 51 H 0.04 1.17 6.66 -2.39 -0.02 1.16 16 Total: -1.00 -71.20 381.72 2.70 -68.50 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.16 Total: 28.85 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 4.73 Total: -12.12 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -4.17 Total: -101.67 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.04 Total: -27.87 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -71.20 2.70 -68.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796201610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.948 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds