Wall clock time and date at job start Tue Mar 31 2020 16:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46983 * 2 1 4 4 C 1.38233 * 119.99589 * 90.00430 * 3 2 1 5 5 C 1.38243 * 119.99630 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.50689 * 119.99996 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.53925 * 0.09549 * 7 6 5 9 9 C 1.53119 * 109.50549 * 120.19728 * 7 6 5 10 10 C 1.53119 * 109.16110 * 177.59576 * 9 7 6 11 11 C 1.53037 * 109.27746 * 302.34109 * 10 9 7 12 12 N 1.46845 * 109.52225 * 59.18191 * 11 10 9 13 13 C 1.46896 * 110.99955 * 174.15942 * 12 11 10 14 14 C 1.50702 * 109.47492 * 294.21024 * 13 12 11 15 15 O 1.21282 * 119.99684 * 0.02562 * 14 13 12 16 16 N 1.34769 * 120.00466 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00241 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46949 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00167 * 359.72205 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99350 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 89.99430 * 22 20 18 24 24 H 1.48494 * 109.47031 * 209.99977 * 22 20 18 25 25 H 1.48504 * 109.46680 * 329.99678 * 22 20 18 26 26 C 1.46843 * 111.19785 * 298.25486 * 12 11 10 27 27 C 1.38237 * 119.99583 * 0.24904 * 6 5 4 28 28 C 1.38231 * 120.00167 * 359.49840 * 27 6 5 29 29 H 1.08996 * 109.47600 * 59.99592 * 1 2 3 30 30 H 1.09000 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47192 * 299.99494 * 1 2 3 32 32 H 1.09004 * 109.46467 * 240.00629 * 2 1 3 33 33 H 1.08996 * 109.47303 * 120.00867 * 2 1 3 34 34 H 1.08001 * 120.00309 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99780 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.51651 * 297.49569 * 9 7 6 37 37 H 1.08990 * 109.52701 * 57.68384 * 9 7 6 38 38 H 1.09001 * 109.50460 * 62.28494 * 10 9 7 39 39 H 1.09002 * 109.50205 * 182.35943 * 10 9 7 40 40 H 1.08998 * 109.46154 * 299.16421 * 11 10 9 41 41 H 1.09004 * 109.46059 * 179.19836 * 11 10 9 42 42 H 1.09004 * 109.47535 * 174.20917 * 13 12 11 43 43 H 1.09004 * 109.47041 * 54.20957 * 13 12 11 44 44 H 0.97010 * 119.99849 * 0.02562 * 16 14 13 45 45 H 1.09000 * 109.47175 * 60.00333 * 17 16 14 46 46 H 1.09001 * 109.47297 * 299.99840 * 17 16 14 47 47 H 0.97005 * 119.99656 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.46383 * 181.75907 * 26 12 11 49 49 H 1.08992 * 109.46650 * 301.73156 * 26 12 11 50 50 H 1.08000 * 119.99320 * 179.72844 * 27 6 5 51 51 H 1.08005 * 120.00205 * 180.23354 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0723 1.1972 5 6 2.7230 3.3759 1.1972 6 6 2.9523 4.0280 0.0001 7 6 3.4535 5.4491 0.0002 8 1 3.5768 5.7921 1.0274 9 6 4.7996 5.5165 -0.7264 10 6 5.2725 6.9721 -0.7744 11 6 4.2112 7.8254 -1.4726 12 7 2.9427 7.7280 -0.7392 13 6 1.9388 8.6419 -1.3001 14 6 2.3777 10.0667 -1.0802 15 8 3.4242 10.2980 -0.5125 16 7 1.6080 11.0838 -1.5153 17 6 2.0346 12.4689 -1.3010 18 6 1.0046 13.4064 -1.8767 19 1 0.1229 13.0101 -2.3583 20 6 1.1905 14.7700 -1.7930 21 7 0.2919 15.5882 -2.2958 22 14 2.7192 15.4554 -0.9669 23 1 3.7956 15.6208 -1.9765 24 1 2.4045 16.7729 -0.3584 25 1 3.1729 14.5172 0.0911 26 6 2.4449 6.3466 -0.7206 27 6 2.7164 3.3783 -1.1971 28 6 2.2612 2.0731 -1.1971 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9026 3.8851 2.1325 36 1 5.5328 4.9128 -0.1915 37 1 4.6850 5.1371 -1.7417 38 1 5.4244 7.3390 0.2407 39 1 6.2100 7.0321 -1.3271 40 1 4.0697 7.4666 -2.4921 41 1 4.5385 8.8649 -1.4957 42 1 0.9809 8.4766 -0.8068 43 1 1.8340 8.4548 -2.3689 44 1 0.7711 10.8988 -1.9697 45 1 2.9927 12.6343 -1.7937 46 1 2.1385 12.6559 -0.2322 47 1 0.4228 16.5475 -2.2373 48 1 1.4892 6.3120 -0.1974 49 1 2.3117 5.9947 -1.7435 50 1 2.8914 3.8892 -2.1323 51 1 2.0805 1.5642 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796586156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:01 Heat of formation + Delta-G solvation = -29.366422 kcal Electronic energy + Delta-G solvation = -27514.258885 eV Core-core repulsion = 23798.246784 eV Total energy + Delta-G solvation = -3716.012101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.32467 -39.31996 -38.01881 -35.10339 -34.22318 -33.25594 -32.33911 -31.49581 -31.17256 -28.89897 -28.33016 -26.69634 -24.56759 -23.27302 -23.08210 -22.59429 -21.76245 -20.79479 -19.79800 -19.55455 -17.27118 -16.73237 -16.08134 -15.97146 -15.77001 -15.32377 -15.22371 -14.88802 -14.40957 -14.32187 -14.13194 -14.03082 -14.01445 -13.71409 -13.50746 -13.27517 -13.14320 -12.87455 -12.65461 -12.43684 -12.31560 -12.21360 -11.88688 -11.71117 -11.55906 -11.33822 -11.22528 -11.05466 -10.98783 -10.77691 -10.70112 -10.53027 -10.43104 -9.96057 -9.49216 -9.15314 -9.11089 -8.77205 -8.72107 -8.25638 -8.08380 -6.21364 -4.23503 1.08299 1.17382 3.25034 3.28372 3.33581 3.42678 3.45041 3.62737 4.23291 4.33935 4.40851 4.46895 4.60747 4.68177 4.75795 4.77446 4.92899 4.97980 5.06136 5.13938 5.14869 5.18087 5.23712 5.25689 5.30594 5.35162 5.43809 5.49458 5.51082 5.53438 5.58162 5.64141 5.65203 5.76223 5.77728 5.86025 5.88090 5.93562 6.00912 6.19765 6.23137 6.31347 6.36277 6.48149 6.77360 6.79510 7.02261 7.08715 7.14228 7.25982 7.40728 8.15480 8.53481 8.76173 8.97876 9.39052 10.90582 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.001949 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.351997 B =14359.762062 C =15004.447020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.075 4.075 7 C -0.044 4.044 8 H 0.088 0.912 9 C -0.111 4.111 10 C -0.114 4.114 11 C 0.049 3.951 12 N -0.519 5.519 13 C 0.037 3.963 14 C 0.501 3.499 15 O -0.540 6.540 16 N -0.708 5.708 17 C 0.222 3.778 18 C -0.544 4.544 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.260 1.260 26 C 0.067 3.933 27 C -0.111 4.111 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.395 0.605 45 H 0.019 0.981 46 H 0.025 0.975 47 H 0.267 0.733 48 H 0.075 0.925 49 H 0.033 0.967 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -31.484 3.102 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.076 4.076 7 C -0.063 4.063 8 H 0.106 0.894 9 C -0.148 4.148 10 C -0.151 4.151 11 C -0.078 4.078 12 N -0.243 5.243 13 C -0.095 4.095 14 C 0.285 3.715 15 O -0.419 6.419 16 N -0.358 5.358 17 C 0.100 3.900 18 C -0.582 4.582 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.185 1.185 26 C -0.061 4.061 27 C -0.129 4.129 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.229 0.771 45 H 0.037 0.963 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.052 0.948 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.747 -30.935 3.960 31.547 hybrid contribution 0.013 0.215 -0.742 0.773 sum 4.760 -30.720 3.218 31.252 Atomic orbital electron populations 1.21751 0.94711 1.01649 1.02326 1.20534 0.96208 0.92776 1.02681 1.19875 0.99532 0.96246 0.93264 1.20999 1.00131 0.94921 0.97437 1.21088 0.99421 0.94713 0.97660 1.19845 0.98911 0.95676 0.93137 1.20171 0.94724 0.89969 1.01436 0.89384 1.21658 0.95888 0.97180 1.00084 1.21548 0.97508 0.93959 1.02124 1.22294 0.89350 1.02637 0.93546 1.61502 1.03245 1.04875 1.54698 1.21967 0.96562 0.91757 0.99169 1.20350 0.84898 0.86695 0.79530 1.90616 1.23830 1.85184 1.42228 1.46178 1.24055 1.07322 1.58211 1.19464 0.96079 0.77587 0.96873 1.21107 1.07123 0.90714 1.39222 0.90277 1.24803 0.96568 0.96676 0.94614 1.69885 1.34773 1.03472 1.44869 0.86809 0.83288 0.78851 0.80703 1.19895 1.20905 1.18458 1.22116 0.97726 0.87563 0.98722 1.20991 0.99519 0.94626 0.97738 1.20989 1.00196 0.94877 0.97433 0.92528 0.92465 0.92512 0.91186 0.91172 0.86296 0.85989 0.91825 0.92233 0.90780 0.91563 0.95751 0.88317 0.88186 0.92335 0.77130 0.96284 0.95702 0.92278 0.90660 0.94842 0.86272 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.08 -0.50 6.06 -27.88 -0.17 -0.67 16 3 C -0.09 -0.71 5.13 -104.63 -0.54 -1.24 16 4 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 5 C -0.11 -0.98 9.67 -39.58 -0.38 -1.36 16 6 C -0.08 -0.70 4.79 -104.63 -0.50 -1.20 16 7 C -0.04 -0.44 2.53 -91.69 -0.23 -0.67 16 8 H 0.09 0.94 7.88 -51.93 -0.41 0.54 16 9 C -0.11 -1.07 5.13 -26.61 -0.14 -1.21 16 10 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 11 C 0.05 0.67 5.10 -3.83 -0.02 0.65 16 12 N -0.52 -7.10 4.40 -236.11 -1.04 -8.13 16 13 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 14 C 0.50 9.45 7.50 -10.99 -0.08 9.37 16 15 O -0.54 -12.12 14.32 5.56 0.08 -12.04 16 16 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 17 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 18 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 19 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 21 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 22 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 26 C 0.07 0.73 4.57 -3.83 -0.02 0.71 16 27 C -0.11 -0.98 8.68 -39.58 -0.34 -1.32 16 28 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.55 7.33 -51.93 -0.38 0.17 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 1.65 5.78 -51.93 -0.30 1.35 16 42 H 0.10 1.21 7.99 -51.93 -0.41 0.79 16 43 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 44 H 0.40 6.97 8.32 -40.82 -0.34 6.63 16 45 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 46 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.07 0.80 8.02 -51.93 -0.42 0.39 16 49 H 0.03 0.35 7.35 -51.93 -0.38 -0.04 16 50 H 0.12 0.97 7.07 -52.49 -0.37 0.59 16 51 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -31.95 402.26 -11.45 -43.40 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.84 Total: 3.01 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.47 Total: -8.81 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.61 Total: -48.49 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.95 -11.45 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796586156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.031 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds