Wall clock time and date at job start Tue Mar 31 2020 16:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46983 * 2 1 4 4 C 1.38233 * 119.99589 * 90.00430 * 3 2 1 5 5 C 1.38243 * 119.99630 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.50689 * 119.99996 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.53925 * 0.09549 * 7 6 5 9 9 C 1.53119 * 109.50549 * 120.19728 * 7 6 5 10 10 C 1.53119 * 109.16110 * 177.59576 * 9 7 6 11 11 C 1.53037 * 109.27746 * 302.34109 * 10 9 7 12 12 N 1.46845 * 109.52225 * 59.18191 * 11 10 9 13 13 C 1.46896 * 110.99955 * 174.15942 * 12 11 10 14 14 C 1.50702 * 109.47492 * 294.21024 * 13 12 11 15 15 O 1.21282 * 119.99684 * 0.02562 * 14 13 12 16 16 N 1.34769 * 120.00466 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00241 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46949 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00167 * 359.72205 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99350 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 89.99430 * 22 20 18 24 24 H 1.48494 * 109.47031 * 209.99977 * 22 20 18 25 25 H 1.48504 * 109.46680 * 329.99678 * 22 20 18 26 26 C 1.46843 * 111.19785 * 298.25486 * 12 11 10 27 27 C 1.38237 * 119.99583 * 0.24904 * 6 5 4 28 28 C 1.38231 * 120.00167 * 359.49840 * 27 6 5 29 29 H 1.08996 * 109.47600 * 59.99592 * 1 2 3 30 30 H 1.09000 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47192 * 299.99494 * 1 2 3 32 32 H 1.09004 * 109.46467 * 240.00629 * 2 1 3 33 33 H 1.08996 * 109.47303 * 120.00867 * 2 1 3 34 34 H 1.08001 * 120.00309 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99780 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.51651 * 297.49569 * 9 7 6 37 37 H 1.08990 * 109.52701 * 57.68384 * 9 7 6 38 38 H 1.09001 * 109.50460 * 62.28494 * 10 9 7 39 39 H 1.09002 * 109.50205 * 182.35943 * 10 9 7 40 40 H 1.08998 * 109.46154 * 299.16421 * 11 10 9 41 41 H 1.09004 * 109.46059 * 179.19836 * 11 10 9 42 42 H 1.09004 * 109.47535 * 174.20917 * 13 12 11 43 43 H 1.09004 * 109.47041 * 54.20957 * 13 12 11 44 44 H 0.97010 * 119.99849 * 0.02562 * 16 14 13 45 45 H 1.09000 * 109.47175 * 60.00333 * 17 16 14 46 46 H 1.09001 * 109.47297 * 299.99840 * 17 16 14 47 47 H 0.97005 * 119.99656 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.46383 * 181.75907 * 26 12 11 49 49 H 1.08992 * 109.46650 * 301.73156 * 26 12 11 50 50 H 1.08000 * 119.99320 * 179.72844 * 27 6 5 51 51 H 1.08005 * 120.00205 * 180.23354 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0723 1.1972 5 6 2.7230 3.3759 1.1972 6 6 2.9523 4.0280 0.0001 7 6 3.4535 5.4491 0.0002 8 1 3.5768 5.7921 1.0274 9 6 4.7996 5.5165 -0.7264 10 6 5.2725 6.9721 -0.7744 11 6 4.2112 7.8254 -1.4726 12 7 2.9427 7.7280 -0.7392 13 6 1.9388 8.6419 -1.3001 14 6 2.3777 10.0667 -1.0802 15 8 3.4242 10.2980 -0.5125 16 7 1.6080 11.0838 -1.5153 17 6 2.0346 12.4689 -1.3010 18 6 1.0046 13.4064 -1.8767 19 1 0.1229 13.0101 -2.3583 20 6 1.1905 14.7700 -1.7930 21 7 0.2919 15.5882 -2.2958 22 14 2.7192 15.4554 -0.9669 23 1 3.7956 15.6208 -1.9765 24 1 2.4045 16.7729 -0.3584 25 1 3.1729 14.5172 0.0911 26 6 2.4449 6.3466 -0.7206 27 6 2.7164 3.3783 -1.1971 28 6 2.2612 2.0731 -1.1971 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9026 3.8851 2.1325 36 1 5.5328 4.9128 -0.1915 37 1 4.6850 5.1371 -1.7417 38 1 5.4244 7.3390 0.2407 39 1 6.2100 7.0321 -1.3271 40 1 4.0697 7.4666 -2.4921 41 1 4.5385 8.8649 -1.4957 42 1 0.9809 8.4766 -0.8068 43 1 1.8340 8.4548 -2.3689 44 1 0.7711 10.8988 -1.9697 45 1 2.9927 12.6343 -1.7937 46 1 2.1385 12.6559 -0.2322 47 1 0.4228 16.5475 -2.2373 48 1 1.4892 6.3120 -0.1974 49 1 2.3117 5.9947 -1.7435 50 1 2.8914 3.8892 -2.1323 51 1 2.0805 1.5642 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796586156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:00 Heat of formation + Delta-G solvation = -48.367459 kcal Electronic energy + Delta-G solvation = -27515.082832 eV Core-core repulsion = 23798.246784 eV Total energy + Delta-G solvation = -3716.836047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20355 -40.47672 -39.09020 -36.21552 -35.67967 -34.42205 -34.06922 -32.26539 -31.77561 -30.53431 -29.12702 -28.08527 -25.24795 -24.55525 -23.69113 -23.57420 -23.15221 -21.60251 -21.28555 -20.38138 -19.12390 -17.72568 -17.57635 -16.98569 -16.64829 -16.57045 -16.31684 -15.98531 -15.79905 -15.48015 -15.08224 -15.00127 -14.78790 -14.62989 -14.49832 -14.28966 -14.22715 -13.98730 -13.92988 -13.81990 -13.41665 -13.07547 -12.96710 -12.82885 -12.62025 -12.50381 -12.33914 -12.04001 -11.94420 -11.83075 -11.71694 -11.65921 -11.49157 -11.41586 -11.31071 -10.92065 -10.60071 -9.89209 -9.76786 -9.35842 -9.24326 -8.40561 -6.47334 0.45797 0.55659 1.31826 1.34291 1.47062 1.76832 2.26845 2.30458 2.86027 2.94829 3.04061 3.73325 3.81359 3.90557 3.93429 3.99548 4.07156 4.19064 4.20186 4.31349 4.31656 4.38564 4.42656 4.48969 4.54415 4.61358 4.64551 4.69478 4.73231 4.76274 4.78415 4.83444 4.98332 5.02966 5.03713 5.09067 5.10870 5.12503 5.21751 5.25367 5.27165 5.30551 5.40488 5.42687 5.55710 5.58464 5.78372 5.80535 5.96243 6.11091 6.14919 6.19461 6.53920 6.88836 7.16074 7.46175 8.74121 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.001949 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.351997 B =14359.762062 C =15004.447020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.122 4.122 6 C -0.084 4.084 7 C -0.038 4.038 8 H 0.076 0.924 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.051 3.949 12 N -0.537 5.537 13 C 0.047 3.953 14 C 0.499 3.501 15 O -0.578 6.578 16 N -0.708 5.708 17 C 0.235 3.765 18 C -0.547 4.547 19 H 0.060 0.940 20 C 0.026 3.974 21 N -0.931 5.931 22 Si 0.937 3.063 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.262 1.262 26 C 0.070 3.930 27 C -0.117 4.117 28 C -0.124 4.124 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.408 0.592 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.272 0.728 48 H 0.079 0.921 49 H 0.045 0.955 50 H 0.126 0.874 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -33.868 3.031 34.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.084 4.084 7 C -0.057 4.057 8 H 0.094 0.906 9 C -0.140 4.140 10 C -0.147 4.147 11 C -0.077 4.077 12 N -0.262 5.262 13 C -0.084 4.084 14 C 0.286 3.714 15 O -0.458 6.458 16 N -0.359 5.359 17 C 0.111 3.889 18 C -0.585 4.585 19 H 0.078 0.922 20 C -0.174 4.174 21 N -0.569 5.569 22 Si 0.761 3.239 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.186 1.186 26 C -0.057 4.057 27 C -0.135 4.135 28 C -0.142 4.142 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.142 0.858 43 H 0.101 0.899 44 H 0.244 0.756 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.144 0.856 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.987 -33.353 3.880 33.946 hybrid contribution -0.112 0.882 -0.726 1.148 sum 4.874 -32.471 3.153 32.986 Atomic orbital electron populations 1.21737 0.94473 1.02278 1.01798 1.20572 0.96320 0.91715 1.03487 1.20157 0.98911 0.97159 0.93114 1.21223 0.99927 0.94802 0.98304 1.21246 0.99682 0.95225 0.97851 1.19780 0.99806 0.95248 0.93608 1.20067 0.94656 0.90340 1.00611 0.90587 1.21598 0.95898 0.95814 1.00723 1.21508 0.97500 0.94768 1.00962 1.22199 0.89973 1.00911 0.94586 1.61465 1.03302 1.06348 1.55119 1.21921 0.97305 0.88112 1.01027 1.21234 0.83866 0.88281 0.77981 1.90605 1.25459 1.86027 1.43685 1.46032 1.24973 1.06019 1.58904 1.19043 0.94794 0.79685 0.95410 1.21314 1.07042 0.91420 1.38708 0.92201 1.25600 0.99384 0.97176 0.95251 1.69984 1.36632 1.04027 1.46303 0.85856 0.79864 0.78361 0.79794 1.18993 1.19779 1.18631 1.22144 0.98014 0.85927 0.99586 1.21114 0.99586 0.95010 0.97773 1.21227 0.99939 0.94824 0.98248 0.93019 0.91293 0.93060 0.90370 0.90418 0.84965 0.85575 0.91118 0.91272 0.92543 0.90482 0.94501 0.91889 0.85806 0.89890 0.75649 0.97236 0.97200 0.91859 0.90267 0.93638 0.85596 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.64 16 2 C -0.08 -0.81 6.06 29.85 0.18 -0.63 16 3 C -0.09 -1.30 5.13 -19.87 -0.10 -1.40 16 4 C -0.12 -1.83 9.70 22.27 0.22 -1.61 16 5 C -0.12 -2.00 9.67 22.27 0.22 -1.79 16 6 C -0.08 -1.42 4.79 -19.87 -0.10 -1.52 16 7 C -0.04 -0.70 2.53 -11.49 -0.03 -0.73 16 8 H 0.08 1.58 7.88 -2.39 -0.02 1.56 16 9 C -0.10 -1.82 5.13 30.67 0.16 -1.66 16 10 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16 11 C 0.05 1.34 5.10 86.33 0.44 1.78 16 12 N -0.54 -13.98 4.40 -900.92 -3.96 -17.94 16 13 C 0.05 1.22 5.45 85.56 0.47 1.69 16 14 C 0.50 18.60 7.50 87.66 0.66 19.25 16 15 O -0.58 -26.16 14.32 -3.04 -0.04 -26.20 16 16 N -0.71 -28.30 5.55 -466.78 -2.59 -30.89 16 17 C 0.23 11.62 4.50 85.63 0.39 12.00 16 18 C -0.55 -30.39 9.83 25.60 0.25 -30.14 16 19 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 20 C 0.03 1.49 5.47 84.66 0.46 1.95 16 21 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 22 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 26 C 0.07 1.39 4.57 86.33 0.39 1.79 16 27 C -0.12 -1.82 8.68 22.27 0.19 -1.63 16 28 C -0.12 -1.78 9.70 22.27 0.22 -1.56 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 33 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.13 1.86 7.95 -2.91 -0.02 1.84 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 1.11 7.33 -2.39 -0.02 1.09 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 2.13 5.78 -2.38 -0.01 2.11 16 42 H 0.12 2.65 7.99 -2.39 -0.02 2.64 16 43 H 0.08 1.79 8.12 -2.38 -0.02 1.78 16 44 H 0.41 14.11 8.32 -92.70 -0.77 13.34 16 45 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 46 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 47 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 48 H 0.08 1.51 8.02 -2.39 -0.02 1.49 16 49 H 0.05 0.81 7.35 -2.39 -0.02 0.79 16 50 H 0.13 1.73 7.07 -2.91 -0.02 1.71 16 51 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -68.99 402.26 0.57 -68.42 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.07 Total: 22.76 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 4.91 Total: -7.07 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -6.25 Total: -104.33 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.04 Total: -26.20 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -68.99 0.57 -68.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796586156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.051 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds