Wall clock time and date at job start Tue Mar 31 2020 15:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46697 * 73.65129 * 3 2 1 5 5 C 1.36933 * 120.00269 * 264.34775 * 4 3 2 6 6 H 1.07994 * 120.00392 * 196.59602 * 5 4 3 7 7 C 1.38810 * 119.99580 * 16.60217 * 5 4 3 8 8 N 1.31625 * 120.00436 * 22.38579 * 7 5 4 9 9 Si 1.86808 * 120.00018 * 202.38973 * 7 5 4 10 10 H 1.48499 * 109.46966 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46966 * 119.99781 * 9 7 5 12 12 H 1.48497 * 109.47142 * 240.00014 * 9 7 5 13 13 C 1.46504 * 119.99956 * 84.35618 * 4 3 2 14 14 C 1.50699 * 109.46891 * 269.99420 * 13 4 3 15 15 O 1.21345 * 120.00297 * 0.02562 * 14 13 4 16 16 C 1.46451 * 120.00036 * 179.97438 * 14 13 4 17 17 C 1.46903 * 127.05993 * 359.97438 * 16 14 13 18 18 C 1.34362 * 106.35552 * 179.75775 * 17 16 14 19 19 C 1.50691 * 125.41965 * 180.24555 * 18 17 16 20 20 N 1.36498 * 109.16150 * 0.41679 * 18 17 16 21 21 C 1.46496 * 124.77419 * 179.81857 * 20 18 17 22 22 C 1.52995 * 109.47210 * 269.70151 * 21 20 18 23 23 C 1.53004 * 109.46819 * 180.02562 * 22 21 20 24 24 C 1.52996 * 109.47506 * 65.00162 * 23 22 21 25 25 C 1.53002 * 109.46836 * 185.00138 * 23 22 21 26 26 C 1.34492 * 110.44369 * 359.55956 * 20 18 17 27 27 C 1.50703 * 125.91694 * 180.23882 * 26 20 18 28 28 H 4.40636 * 5.51394 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47073 * 313.65143 * 3 2 1 30 30 H 1.09002 * 109.46860 * 193.64950 * 3 2 1 31 31 H 0.97004 * 119.99884 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47243 * 149.99786 * 13 4 3 33 33 H 1.09004 * 109.47110 * 29.99637 * 13 4 3 34 34 H 1.07998 * 126.82309 * 0.02562 * 17 16 14 35 35 H 1.09005 * 109.47177 * 270.20443 * 19 18 17 36 36 H 1.09001 * 109.47753 * 30.20055 * 19 18 17 37 37 H 1.09005 * 109.47326 * 150.20326 * 19 18 17 38 38 H 1.09000 * 109.46939 * 149.70145 * 21 20 18 39 39 H 1.09002 * 109.46965 * 29.70506 * 21 20 18 40 40 H 1.09001 * 109.46879 * 60.00598 * 22 21 20 41 41 H 1.09002 * 109.47447 * 300.00060 * 22 21 20 42 42 H 1.09001 * 109.47228 * 304.99892 * 23 22 21 43 43 H 1.09000 * 109.47576 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.46977 * 300.00211 * 24 23 22 45 45 H 1.09001 * 109.47097 * 59.99650 * 24 23 22 46 46 H 1.08998 * 109.47219 * 59.99918 * 25 23 22 47 47 H 1.09006 * 109.47177 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47430 * 299.99551 * 25 23 22 49 49 H 1.09003 * 109.46865 * 90.00365 * 27 26 20 50 50 H 1.08998 * 109.46987 * 210.00285 * 27 26 20 51 51 H 1.09003 * 109.46822 * 330.00429 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.3879 -1.3254 5 6 3.4734 -1.6909 -1.5754 6 1 4.0746 -1.9365 -2.4382 7 6 3.0440 -2.6960 -0.7197 8 7 1.9907 -2.5034 0.0459 9 14 3.9610 -4.3222 -0.6545 10 1 5.1005 -4.2864 -1.6061 11 1 4.4715 -4.5478 0.7216 12 1 3.0396 -5.4254 -1.0277 13 6 3.2605 0.6176 -2.3834 14 6 1.9708 0.6949 -3.1591 15 8 1.0375 -0.0196 -2.8574 16 6 1.8433 1.6331 -4.2763 17 6 2.8657 2.5649 -4.7710 18 6 2.3126 3.2185 -5.8065 19 6 2.9940 4.2760 -6.6361 20 7 1.0342 2.7749 -5.9850 21 6 0.1176 3.2617 -7.0190 22 6 -0.6859 4.4436 -6.4729 23 6 -1.6436 4.9516 -7.5526 24 6 -2.6784 3.8693 -7.8667 25 6 -2.3568 6.2089 -7.0512 26 6 0.7364 1.8241 -5.0817 27 6 -0.5770 1.0939 -4.9670 28 1 -1.0499 0.0002 -0.0001 29 1 3.0097 -0.7085 0.7436 30 1 3.0089 0.9995 0.2425 31 1 1.6905 -3.2060 0.6435 32 1 4.0722 0.3384 -3.0552 33 1 3.4754 1.5889 -1.9378 34 1 3.8649 2.6951 -4.3826 35 1 2.8170 5.2559 -6.1924 36 1 4.0657 4.0794 -6.6667 37 1 2.5921 4.2580 -7.6492 38 1 -0.5638 2.4610 -7.3066 39 1 0.6895 3.5824 -7.8897 40 1 -0.0045 5.2443 -6.1853 41 1 -1.2578 4.1229 -5.6021 42 1 -1.0806 5.1888 -8.4553 43 1 -3.3604 4.2310 -8.6362 44 1 -2.1703 2.9735 -8.2239 45 1 -3.2415 3.6321 -6.9640 46 1 -1.6196 6.9800 -6.8275 47 1 -3.0387 6.5711 -7.8206 48 1 -2.9199 5.9717 -6.1485 49 1 -0.5488 0.1964 -5.5850 50 1 -0.7475 0.8140 -3.9275 51 1 -1.3844 1.7431 -5.3058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799200776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:11 Heat of formation + Delta-G solvation = 78.048219 kcal Electronic energy + Delta-G solvation = -28691.631290 eV Core-core repulsion = 24980.277038 eV Total energy + Delta-G solvation = -3711.354252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.22723 -37.97669 -37.11598 -35.31951 -32.89896 -32.39226 -31.30021 -31.04484 -29.06699 -28.88952 -27.58492 -27.02266 -25.77928 -24.50274 -23.85674 -22.06843 -20.88541 -20.42921 -18.98575 -17.75841 -17.25881 -16.29758 -16.20008 -15.85493 -15.31146 -14.87694 -14.73538 -14.28231 -13.90646 -13.83961 -13.76295 -13.70606 -13.21913 -13.20996 -13.07701 -12.72284 -12.69175 -12.54565 -12.39063 -12.29639 -12.20663 -12.07339 -11.80808 -11.70201 -11.30108 -11.17901 -11.09897 -11.06635 -11.00876 -10.92729 -10.74470 -10.55191 -10.12297 -9.85796 -8.81426 -8.60796 -8.45727 -8.26192 -8.11462 -7.64044 -6.80258 -5.60809 -3.01297 2.10157 2.60452 2.90423 3.46445 3.54148 3.56412 4.08604 4.32987 4.36467 4.44275 4.47876 4.62972 4.65362 4.75918 4.80722 4.92741 5.01098 5.05327 5.20017 5.22376 5.22830 5.26177 5.34168 5.45384 5.46500 5.47767 5.54633 5.57448 5.58844 5.74375 5.79563 5.80403 5.84346 5.89262 5.92760 5.99091 6.09863 6.18502 6.21761 6.37887 6.38512 6.55198 6.77643 6.93874 7.16977 7.38806 7.42708 7.48935 7.67120 7.89268 8.41388 8.93591 9.26760 9.52973 9.92494 10.37957 11.42261 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.002829 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.662090 B = 9894.401404 C =10390.448989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.090 4.090 3 C 0.269 3.731 4 N -0.570 5.570 5 C -0.258 4.258 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.294 1.294 13 C 0.112 3.888 14 C 0.374 3.626 15 O -0.426 6.426 16 C -0.244 4.244 17 C -0.154 4.154 18 C -0.006 4.006 19 C -0.079 4.079 20 N -0.438 5.438 21 C 0.098 3.902 22 C -0.131 4.131 23 C -0.093 4.093 24 C -0.153 4.153 25 C -0.147 4.147 26 C 0.087 3.913 27 C -0.090 4.090 28 H 0.183 0.817 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.251 0.749 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.071 0.929 50 H 0.100 0.900 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 18.276 -16.151 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.093 4.093 3 C 0.144 3.856 4 N -0.288 5.288 5 C -0.387 4.387 6 H 0.092 0.908 7 C -0.195 4.195 8 N -0.523 5.523 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.221 1.221 13 C -0.017 4.017 14 C 0.246 3.754 15 O -0.299 6.299 16 C -0.253 4.253 17 C -0.178 4.178 18 C -0.113 4.113 19 C -0.136 4.136 20 N -0.116 5.116 21 C -0.024 4.024 22 C -0.169 4.169 23 C -0.112 4.112 24 C -0.211 4.211 25 C -0.205 4.205 26 C -0.028 4.028 27 C -0.147 4.147 28 H 0.200 0.800 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.119 0.881 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.919 17.872 -16.101 24.553 hybrid contribution -0.081 -0.973 -0.256 1.009 sum -5.000 16.899 -16.357 24.044 Atomic orbital electron populations 1.23929 0.95090 1.08048 1.04420 1.24045 0.95071 0.93758 0.96431 1.17843 0.83177 0.96205 0.88363 1.44149 1.73758 1.05311 1.05629 1.19190 1.25923 0.82654 1.10957 0.90829 1.24895 0.96376 0.97408 1.00835 1.70201 1.21359 1.32838 1.27915 0.86304 0.79473 0.84158 0.77334 1.20393 1.21646 1.22098 1.21243 0.94808 0.93928 0.91684 1.23308 0.91547 0.79152 0.81345 1.90544 1.39751 1.36260 1.63312 1.21783 0.94382 1.05768 1.03336 1.21830 0.99289 0.98939 0.97718 1.20054 0.85466 1.03537 1.02267 1.20263 1.00206 0.95631 0.97513 1.43507 1.11167 1.30858 1.26038 1.21930 0.92475 0.97870 0.90126 1.22045 0.98223 0.97515 0.99123 1.21059 0.96260 0.95784 0.98105 1.21943 0.98850 0.98417 1.01856 1.21828 1.00385 0.96923 1.01323 1.20849 0.97396 0.92881 0.91695 1.20503 0.90251 0.98314 1.05631 0.79959 0.88617 0.94876 0.93881 0.90509 0.91382 0.83868 0.91561 0.90336 0.92383 0.89268 0.89522 0.91108 0.90986 0.91044 0.92496 0.92506 0.92333 0.92619 0.92532 0.92486 0.91003 0.88130 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.52 18.78 29.55 0.56 -6.96 16 2 C -0.09 -2.38 10.03 -37.12 -0.37 -2.76 16 3 C 0.27 6.76 5.45 -6.83 -0.04 6.73 16 4 N -0.57 -14.61 2.09 -177.95 -0.37 -14.98 16 5 C -0.26 -7.23 9.66 -15.06 -0.15 -7.38 16 6 H 0.07 2.03 7.90 -52.49 -0.41 1.62 16 7 C 0.00 0.12 4.85 -17.43 -0.08 0.03 16 8 N -0.88 -26.31 9.50 55.49 0.53 -25.78 16 9 Si 0.90 22.31 29.61 -169.99 -5.03 17.28 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 C 0.11 2.38 5.74 -5.19 -0.03 2.35 16 14 C 0.37 8.23 7.10 -31.00 -0.22 8.01 16 15 O -0.43 -11.02 12.97 5.50 0.07 -10.95 16 16 C -0.24 -4.47 6.29 -103.09 -0.65 -5.11 16 17 C -0.15 -2.30 10.58 -37.44 -0.40 -2.70 16 18 C -0.01 -0.08 6.84 -81.89 -0.56 -0.64 16 19 C -0.08 -0.68 10.05 36.00 0.36 -0.32 16 20 N -0.44 -5.65 2.68 -107.62 -0.29 -5.94 16 21 C 0.10 0.88 5.12 -4.05 -0.02 0.86 16 22 C -0.13 -1.06 5.01 -26.73 -0.13 -1.19 16 23 C -0.09 -0.58 2.92 -90.62 -0.26 -0.85 16 24 C -0.15 -0.95 8.95 37.16 0.33 -0.62 16 25 C -0.15 -0.90 9.19 37.16 0.34 -0.55 16 26 C 0.09 1.40 6.94 -81.43 -0.56 0.84 16 27 C -0.09 -1.35 9.28 36.01 0.33 -1.02 16 28 H 0.18 4.05 7.80 -54.09 -0.42 3.62 16 29 H 0.10 2.58 6.41 -51.93 -0.33 2.24 16 30 H 0.03 0.72 7.97 -51.93 -0.41 0.31 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.08 1.53 8.02 -51.93 -0.42 1.11 16 33 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 34 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.42 6.92 -51.93 -0.36 0.06 16 38 H 0.09 0.76 5.91 -51.93 -0.31 0.46 16 39 H 0.09 0.64 6.87 -51.93 -0.36 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.35 6.56 -51.93 -0.34 0.00 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.10 1.82 6.52 -51.93 -0.34 1.49 16 51 H 0.06 0.67 7.58 -51.93 -0.39 0.27 16 LS Contribution 413.29 15.07 6.23 6.23 Total: -1.00 -34.78 413.29 -9.14 -43.91 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.72 Total: 1.51 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -1.55 Total: -11.28 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.13 Total: -46.70 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.78 -9.14 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.962 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds