Wall clock time and date at job start Tue Mar 31 2020 15:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46697 * 73.65129 * 3 2 1 5 5 C 1.36933 * 120.00269 * 264.34775 * 4 3 2 6 6 H 1.07994 * 120.00392 * 196.59602 * 5 4 3 7 7 C 1.38810 * 119.99580 * 16.60217 * 5 4 3 8 8 N 1.31625 * 120.00436 * 22.38579 * 7 5 4 9 9 Si 1.86808 * 120.00018 * 202.38973 * 7 5 4 10 10 H 1.48499 * 109.46966 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46966 * 119.99781 * 9 7 5 12 12 H 1.48497 * 109.47142 * 240.00014 * 9 7 5 13 13 C 1.46504 * 119.99956 * 84.35618 * 4 3 2 14 14 C 1.50699 * 109.46891 * 269.99420 * 13 4 3 15 15 O 1.21345 * 120.00297 * 0.02562 * 14 13 4 16 16 C 1.46451 * 120.00036 * 179.97438 * 14 13 4 17 17 C 1.46903 * 127.05993 * 359.97438 * 16 14 13 18 18 C 1.34362 * 106.35552 * 179.75775 * 17 16 14 19 19 C 1.50691 * 125.41965 * 180.24555 * 18 17 16 20 20 N 1.36498 * 109.16150 * 0.41679 * 18 17 16 21 21 C 1.46496 * 124.77419 * 179.81857 * 20 18 17 22 22 C 1.52995 * 109.47210 * 269.70151 * 21 20 18 23 23 C 1.53004 * 109.46819 * 180.02562 * 22 21 20 24 24 C 1.52996 * 109.47506 * 65.00162 * 23 22 21 25 25 C 1.53002 * 109.46836 * 185.00138 * 23 22 21 26 26 C 1.34492 * 110.44369 * 359.55956 * 20 18 17 27 27 C 1.50703 * 125.91694 * 180.23882 * 26 20 18 28 28 H 4.40636 * 5.51394 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47073 * 313.65143 * 3 2 1 30 30 H 1.09002 * 109.46860 * 193.64950 * 3 2 1 31 31 H 0.97004 * 119.99884 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47243 * 149.99786 * 13 4 3 33 33 H 1.09004 * 109.47110 * 29.99637 * 13 4 3 34 34 H 1.07998 * 126.82309 * 0.02562 * 17 16 14 35 35 H 1.09005 * 109.47177 * 270.20443 * 19 18 17 36 36 H 1.09001 * 109.47753 * 30.20055 * 19 18 17 37 37 H 1.09005 * 109.47326 * 150.20326 * 19 18 17 38 38 H 1.09000 * 109.46939 * 149.70145 * 21 20 18 39 39 H 1.09002 * 109.46965 * 29.70506 * 21 20 18 40 40 H 1.09001 * 109.46879 * 60.00598 * 22 21 20 41 41 H 1.09002 * 109.47447 * 300.00060 * 22 21 20 42 42 H 1.09001 * 109.47228 * 304.99892 * 23 22 21 43 43 H 1.09000 * 109.47576 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.46977 * 300.00211 * 24 23 22 45 45 H 1.09001 * 109.47097 * 59.99650 * 24 23 22 46 46 H 1.08998 * 109.47219 * 59.99918 * 25 23 22 47 47 H 1.09006 * 109.47177 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47430 * 299.99551 * 25 23 22 49 49 H 1.09003 * 109.46865 * 90.00365 * 27 26 20 50 50 H 1.08998 * 109.46987 * 210.00285 * 27 26 20 51 51 H 1.09003 * 109.46822 * 330.00429 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.3879 -1.3254 5 6 3.4734 -1.6909 -1.5754 6 1 4.0746 -1.9365 -2.4382 7 6 3.0440 -2.6960 -0.7197 8 7 1.9907 -2.5034 0.0459 9 14 3.9610 -4.3222 -0.6545 10 1 5.1005 -4.2864 -1.6061 11 1 4.4715 -4.5478 0.7216 12 1 3.0396 -5.4254 -1.0277 13 6 3.2605 0.6176 -2.3834 14 6 1.9708 0.6949 -3.1591 15 8 1.0375 -0.0196 -2.8574 16 6 1.8433 1.6331 -4.2763 17 6 2.8657 2.5649 -4.7710 18 6 2.3126 3.2185 -5.8065 19 6 2.9940 4.2760 -6.6361 20 7 1.0342 2.7749 -5.9850 21 6 0.1176 3.2617 -7.0190 22 6 -0.6859 4.4436 -6.4729 23 6 -1.6436 4.9516 -7.5526 24 6 -2.6784 3.8693 -7.8667 25 6 -2.3568 6.2089 -7.0512 26 6 0.7364 1.8241 -5.0817 27 6 -0.5770 1.0939 -4.9670 28 1 -1.0499 0.0002 -0.0001 29 1 3.0097 -0.7085 0.7436 30 1 3.0089 0.9995 0.2425 31 1 1.6905 -3.2060 0.6435 32 1 4.0722 0.3384 -3.0552 33 1 3.4754 1.5889 -1.9378 34 1 3.8649 2.6951 -4.3826 35 1 2.8170 5.2559 -6.1924 36 1 4.0657 4.0794 -6.6667 37 1 2.5921 4.2580 -7.6492 38 1 -0.5638 2.4610 -7.3066 39 1 0.6895 3.5824 -7.8897 40 1 -0.0045 5.2443 -6.1853 41 1 -1.2578 4.1229 -5.6021 42 1 -1.0806 5.1888 -8.4553 43 1 -3.3604 4.2310 -8.6362 44 1 -2.1703 2.9735 -8.2239 45 1 -3.2415 3.6321 -6.9640 46 1 -1.6196 6.9800 -6.8275 47 1 -3.0387 6.5711 -7.8206 48 1 -2.9199 5.9717 -6.1485 49 1 -0.5488 0.1964 -5.5850 50 1 -0.7475 0.8140 -3.9275 51 1 -1.3844 1.7431 -5.3058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799200776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:10 Heat of formation + Delta-G solvation = 61.019909 kcal Electronic energy + Delta-G solvation = -28692.369693 eV Core-core repulsion = 24980.277038 eV Total energy + Delta-G solvation = -3712.092655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.32085 -39.63770 -37.78326 -37.24966 -33.85165 -33.45456 -33.38136 -32.96309 -30.19236 -29.93527 -28.52658 -28.05047 -27.80665 -25.79142 -24.76571 -23.67432 -22.26032 -20.96587 -20.23854 -19.31916 -19.05555 -18.16694 -17.40253 -16.84023 -16.62199 -16.26717 -15.86784 -15.68613 -15.61591 -15.15597 -14.87508 -14.62029 -14.46897 -14.40374 -14.29757 -14.06151 -13.96653 -13.58117 -13.38310 -13.30842 -13.25740 -13.05157 -12.98641 -12.93048 -12.72071 -12.53827 -12.38921 -12.35405 -12.18534 -12.15727 -11.87914 -11.75092 -11.59812 -11.52701 -10.80973 -10.61831 -10.38480 -10.08203 -9.40400 -8.83143 -8.80380 -7.75742 -5.17226 0.71371 1.47912 1.49397 1.50371 1.60074 1.92706 2.43863 2.57677 2.62186 2.70878 3.32083 3.62214 3.68405 3.75560 3.85224 3.96432 3.99692 4.04253 4.13821 4.20730 4.22992 4.31011 4.44018 4.53017 4.59174 4.67023 4.73624 4.73988 4.78820 4.84177 4.86419 4.88938 4.89913 4.94051 4.98951 5.00323 5.05231 5.10694 5.12795 5.20166 5.28008 5.33754 5.40119 5.46658 5.52050 5.68131 5.73617 5.97724 6.25298 6.32733 6.48151 7.12708 7.31308 7.51315 7.88192 8.29443 9.25795 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.002829 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.662090 B = 9894.401404 C =10390.448989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.113 4.113 3 C 0.269 3.731 4 N -0.583 5.583 5 C -0.262 4.262 6 H 0.073 0.927 7 C -0.050 4.050 8 N -0.910 5.910 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.304 1.304 13 C 0.108 3.892 14 C 0.373 3.627 15 O -0.480 6.480 16 C -0.286 4.286 17 C -0.173 4.173 18 C 0.009 3.991 19 C -0.077 4.077 20 N -0.430 5.430 21 C 0.091 3.909 22 C -0.123 4.123 23 C -0.086 4.086 24 C -0.155 4.155 25 C -0.148 4.148 26 C 0.081 3.919 27 C -0.083 4.083 28 H 0.206 0.794 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.242 0.758 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.046 0.954 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 20.586 -19.040 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.116 4.116 3 C 0.144 3.856 4 N -0.302 5.302 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.246 4.246 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.232 1.232 13 C -0.019 4.019 14 C 0.250 3.750 15 O -0.357 6.357 16 C -0.294 4.294 17 C -0.196 4.196 18 C -0.099 4.099 19 C -0.134 4.134 20 N -0.106 5.106 21 C -0.029 4.029 22 C -0.162 4.162 23 C -0.105 4.105 24 C -0.213 4.213 25 C -0.205 4.205 26 C -0.036 4.036 27 C -0.140 4.140 28 H 0.223 0.777 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.175 0.825 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.075 20.237 -19.034 28.079 hybrid contribution -0.361 -1.544 0.508 1.665 sum -4.435 18.693 -18.526 26.689 Atomic orbital electron populations 1.24617 0.96101 1.07677 1.03967 1.24551 0.95978 0.94167 0.96912 1.17864 0.82705 0.97152 0.87917 1.44282 1.73757 1.05290 1.06856 1.19463 1.25219 0.83981 1.10530 0.90907 1.25616 0.97208 1.00627 1.01144 1.70381 1.22841 1.33416 1.28862 0.85290 0.78264 0.79885 0.77429 1.19015 1.21379 1.23243 1.21447 0.95153 0.94132 0.91204 1.23448 0.90707 0.78916 0.81973 1.90526 1.41178 1.38801 1.65194 1.21549 0.96960 1.07150 1.03778 1.22038 0.99633 0.99040 0.98842 1.20717 0.84982 1.02895 1.01293 1.20419 1.00577 0.94587 0.97831 1.43765 1.11862 1.29385 1.25590 1.22283 0.92473 0.98360 0.89800 1.21971 0.98179 0.97007 0.98995 1.21028 0.95912 0.95609 0.97976 1.21965 0.99015 0.98623 1.01662 1.21836 1.00547 0.96968 1.01197 1.20868 0.96998 0.93548 0.92192 1.20377 0.91250 0.98963 1.03425 0.77706 0.90970 0.91588 0.94801 0.89249 0.88672 0.82454 0.90040 0.89082 0.90303 0.88721 0.86747 0.91080 0.93015 0.89368 0.91639 0.92235 0.93398 0.92348 0.91635 0.93521 0.91035 0.91689 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -15.93 18.78 74.32 1.40 -14.54 16 2 C -0.11 -6.16 10.03 31.13 0.31 -5.85 16 3 C 0.27 13.80 5.45 84.57 0.46 14.26 16 4 N -0.58 -30.37 2.09 -716.90 -1.50 -31.86 16 5 C -0.26 -14.94 9.66 84.03 0.81 -14.12 16 6 H 0.07 4.06 7.90 -2.91 -0.02 4.04 16 7 C -0.05 -2.91 4.85 84.86 0.41 -2.49 16 8 N -0.91 -56.19 9.50 21.65 0.21 -55.98 16 9 Si 0.96 47.01 29.61 68.60 2.03 49.04 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 13 C 0.11 4.60 5.74 85.63 0.49 5.09 16 14 C 0.37 16.82 7.10 27.83 0.20 17.02 16 15 O -0.48 -25.97 12.97 -3.23 -0.04 -26.01 16 16 C -0.29 -10.47 6.29 -18.87 -0.12 -10.59 16 17 C -0.17 -4.89 10.58 23.65 0.25 -4.64 16 18 C 0.01 0.20 6.84 40.94 0.28 0.48 16 19 C -0.08 -0.98 10.05 71.23 0.72 -0.26 16 20 N -0.43 -10.08 2.68 -494.41 -1.33 -11.40 16 21 C 0.09 1.34 5.12 86.38 0.44 1.78 16 22 C -0.12 -1.66 5.01 30.59 0.15 -1.51 16 23 C -0.09 -0.82 2.92 -10.79 -0.03 -0.86 16 24 C -0.16 -1.57 8.95 71.98 0.64 -0.93 16 25 C -0.15 -1.46 9.19 71.98 0.66 -0.80 16 26 C 0.08 2.59 6.94 42.15 0.29 2.88 16 27 C -0.08 -2.54 9.28 71.24 0.66 -1.88 16 28 H 0.21 9.28 7.80 -4.42 -0.03 9.25 16 29 H 0.07 4.02 6.41 -2.39 -0.02 4.01 16 30 H 0.07 2.87 7.97 -2.39 -0.02 2.85 16 31 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.09 3.55 8.02 -2.39 -0.02 3.53 16 33 H 0.10 3.49 7.95 -2.38 -0.02 3.47 16 34 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 35 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.72 6.92 -2.38 -0.02 0.70 16 38 H 0.09 1.34 5.91 -2.39 -0.01 1.32 16 39 H 0.11 1.12 6.87 -2.39 -0.02 1.10 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.57 6.56 -2.39 -0.02 0.55 16 45 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 48 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.06 2.50 6.52 -2.39 -0.02 2.48 16 51 H 0.09 2.00 7.58 -2.39 -0.02 1.99 16 Total: -1.00 -78.55 413.29 8.29 -70.26 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.89 Total: 22.91 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 8.03 Total: -16.95 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -2.62 Total: -99.25 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.04 Total: -26.01 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -78.55 8.29 -70.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.282 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds