Wall clock time and date at job start Tue Mar 31 2020 16:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.27116 * 2 1 4 4 N 1.46504 * 109.47241 * 302.08686 * 3 2 1 5 5 C 1.34775 * 119.99808 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00359 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99942 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47374 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.47367 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99965 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00076 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99546 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47108 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46690 * 120.00025 * 13 11 9 16 16 H 1.48502 * 109.46625 * 239.99490 * 13 11 9 17 17 C 1.54781 * 110.15432 * 237.80168 * 2 1 3 18 18 C 1.54937 * 102.83798 * 262.84810 * 17 2 1 19 19 N 1.48531 * 103.37331 * 322.79651 * 18 17 2 20 20 C 1.46908 * 110.99857 * 159.63431 * 19 18 17 21 21 C 1.50705 * 109.46685 * 69.87722 * 20 19 18 22 22 C 1.38235 * 119.99851 * 269.72798 * 21 20 19 23 23 C 1.38233 * 119.99742 * 179.78879 * 22 21 20 24 24 C 1.38238 * 120.00333 * 0.43871 * 23 22 21 25 25 C 1.38238 * 119.99622 * 359.81569 * 24 23 22 26 26 C 1.38234 * 120.00080 * 90.00072 * 21 20 19 27 27 C 1.47901 * 105.82310 * 39.12709 * 19 18 17 28 28 H 1.09000 * 109.47025 * 297.90651 * 1 2 3 29 29 H 1.08993 * 109.47188 * 57.91650 * 1 2 3 30 30 H 1.09007 * 109.46831 * 177.91348 * 1 2 3 31 31 H 1.09003 * 109.47552 * 62.08942 * 3 2 1 32 32 H 1.09004 * 109.46893 * 182.09015 * 3 2 1 33 33 H 0.96999 * 120.00062 * 0.02562 * 4 3 2 34 34 H 1.09006 * 109.47163 * 300.00340 * 7 5 4 35 35 H 1.09004 * 109.47158 * 60.00035 * 7 5 4 36 36 H 1.09003 * 109.47552 * 299.99868 * 8 7 5 37 37 H 1.09001 * 109.47129 * 60.00406 * 8 7 5 38 38 H 0.96998 * 119.99927 * 179.97438 * 12 11 9 39 39 H 1.08996 * 110.65506 * 144.56348 * 17 2 1 40 40 H 1.09005 * 110.87400 * 21.22897 * 17 2 1 41 41 H 1.09002 * 110.66811 * 204.28059 * 18 17 2 42 42 H 1.09001 * 110.66542 * 81.31698 * 18 17 2 43 43 H 1.08997 * 109.46891 * 189.87443 * 20 19 18 44 44 H 1.08998 * 109.47004 * 309.88012 * 20 19 18 45 45 H 1.07999 * 119.99841 * 359.97438 * 22 21 20 46 46 H 1.08003 * 120.00200 * 180.26994 * 23 22 21 47 47 H 1.07999 * 120.00462 * 179.83355 * 24 23 22 48 48 H 1.07993 * 120.00031 * 179.97438 * 25 24 23 49 49 H 1.08000 * 119.99963 * 359.97225 * 26 21 20 50 50 H 1.09004 * 109.92027 * 94.01264 * 27 19 18 51 51 H 1.08993 * 109.91982 * 215.11956 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 7 1.5410 2.1475 -1.1703 5 6 1.8770 3.4360 -1.3786 6 8 2.6094 4.0056 -0.5976 7 6 1.3427 4.1689 -2.5820 8 6 1.8718 5.6044 -2.5814 9 6 1.3379 6.3372 -3.7852 10 1 0.6866 5.8296 -4.4814 11 6 1.6817 7.6553 -3.9984 12 7 2.4751 8.2733 -3.1509 13 14 1.0204 8.5633 -5.4910 14 1 0.1565 7.6511 -6.2826 15 1 0.2256 9.7357 -5.0450 16 1 2.1541 9.0247 -6.3319 17 6 2.0633 -0.7742 -1.2296 18 6 2.3585 -2.1803 -0.6495 19 7 2.8811 -1.8884 0.7098 20 6 2.7669 -3.0653 1.5817 21 6 3.7436 -4.1208 1.1309 22 6 3.3577 -5.0671 0.2001 23 6 4.2549 -6.0327 -0.2166 24 6 5.5352 -6.0574 0.3042 25 6 5.9194 -5.1143 1.2390 26 6 5.0235 -4.1461 1.6525 27 6 2.0646 -0.7672 1.2236 28 1 -0.3633 0.4810 0.9082 29 1 -0.3633 0.5458 -0.8707 30 1 -0.3633 -1.0271 -0.0374 31 1 1.7348 1.9428 0.9081 32 1 3.1494 1.4202 -0.0375 33 1 0.9550 1.6921 -1.7947 34 1 1.6680 3.6617 -3.4904 35 1 0.2534 4.1836 -2.5443 36 1 1.5461 6.1114 -1.6731 37 1 2.9611 5.5902 -2.6189 38 1 2.7173 9.2004 -3.3011 39 1 2.9759 -0.3136 -1.6078 40 1 1.3059 -0.8308 -2.0114 41 1 3.1106 -2.6936 -1.2488 42 1 1.4450 -2.7721 -0.5917 43 1 2.9900 -2.7790 2.6094 44 1 1.7529 -3.4613 1.5266 45 1 2.3562 -5.0503 -0.2038 46 1 3.9548 -6.7694 -0.9472 47 1 6.2353 -6.8134 -0.0193 48 1 6.9194 -5.1338 1.6462 49 1 5.3237 -3.4092 2.3826 50 1 1.2324 -1.1531 1.8124 51 1 2.6805 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812546954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:56 Heat of formation + Delta-G solvation = -25.236707 kcal Electronic energy + Delta-G solvation = -27366.398129 eV Core-core repulsion = 23650.565106 eV Total energy + Delta-G solvation = -3715.833023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40473 -39.41855 -38.60649 -35.54556 -33.42148 -33.17281 -31.38398 -31.20933 -30.76275 -29.91216 -27.34073 -26.65009 -25.31762 -24.21331 -22.93048 -22.11875 -21.46032 -21.04262 -19.65444 -19.20198 -17.13452 -16.92977 -16.35299 -16.01684 -15.57269 -15.55141 -15.43840 -15.11511 -14.80344 -14.37636 -14.35842 -13.94633 -13.78400 -13.63055 -13.45907 -13.05414 -12.91609 -12.85044 -12.52228 -12.33444 -12.19158 -12.13766 -11.79947 -11.64931 -11.34187 -11.24977 -11.12715 -11.09842 -10.93153 -10.83144 -10.80035 -10.55511 -9.92762 -9.63166 -9.23400 -9.15079 -9.12429 -8.95845 -8.71776 -8.68501 -8.29916 -5.93927 -3.98160 1.00210 1.09274 3.32800 3.33993 3.34284 3.40666 3.43971 3.59819 3.84750 4.22585 4.28311 4.45611 4.49059 4.49900 4.58791 4.69002 4.78284 4.89460 4.94329 4.97241 5.03177 5.16175 5.19744 5.27629 5.33560 5.40614 5.40999 5.48731 5.56081 5.56341 5.66336 5.66798 5.71898 5.79831 5.83138 5.87558 6.00500 6.06916 6.13177 6.19642 6.26718 6.28041 6.28408 6.55668 6.63907 6.70628 6.79723 6.93561 7.77407 7.89900 7.95166 8.10219 8.41625 8.85092 9.11006 9.65262 11.17071 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.001767 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.272765 B =15840.975967 C =16039.886324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C 0.136 3.864 4 N -0.742 5.742 5 C 0.509 3.491 6 O -0.535 6.535 7 C -0.130 4.130 8 C 0.036 3.964 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.889 5.889 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.116 4.116 18 C 0.038 3.962 19 N -0.509 5.509 20 C 0.084 3.916 21 C -0.075 4.075 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.098 4.098 27 C 0.048 3.952 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.395 0.605 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.050 0.950 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -32.187 9.262 33.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C 0.012 3.988 4 N -0.397 5.397 5 C 0.297 3.703 6 O -0.411 6.411 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.154 4.154 18 C -0.090 4.090 19 N -0.233 5.233 20 C -0.043 4.043 21 C -0.076 4.076 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.080 4.080 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.229 0.771 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.068 0.932 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.419 -31.438 9.882 32.957 hybrid contribution -1.424 0.011 -1.035 1.760 sum -1.006 -31.426 8.847 32.663 Atomic orbital electron populations 1.21919 0.93542 1.01575 1.02692 1.21671 0.95968 0.95051 0.95587 1.21272 0.98819 0.89386 0.89331 1.46212 1.52887 1.13005 1.27588 1.21527 0.80118 0.80712 0.87947 1.90668 1.36163 1.66923 1.47314 1.21855 1.01182 1.00281 0.93683 1.18900 0.97009 0.86959 0.97250 1.21274 1.29781 0.96526 1.08865 0.92574 1.25032 0.95201 0.97697 0.96515 1.70011 1.35289 1.11441 1.36080 0.86539 0.78722 0.79790 0.82920 1.19776 1.21036 1.21036 1.22688 1.01815 0.94453 0.96457 1.23243 0.98253 0.97042 0.90440 1.64812 1.51201 1.05062 1.02181 1.21217 0.96223 0.89473 0.97419 1.19699 0.95038 0.95656 0.97167 1.21040 0.99598 0.95221 0.97365 1.21114 0.93937 0.98820 1.00114 1.21163 0.96380 0.99076 0.97424 1.21174 0.99581 0.95336 0.97825 1.21044 0.92857 0.97962 0.99839 1.22910 0.95889 0.93014 0.96200 0.92096 0.91915 0.92685 0.91890 0.91381 0.77074 0.90342 0.90382 0.95838 0.95824 0.93028 0.90058 0.90672 0.90011 0.93881 0.89824 0.93751 0.86512 0.86210 0.86248 0.86091 0.85948 0.93180 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.03 37.16 0.30 -0.79 16 2 C -0.08 -0.72 0.67 -153.05 -0.10 -0.83 16 3 C 0.14 1.69 4.27 -4.04 -0.02 1.67 16 4 N -0.74 -10.31 5.07 -60.29 -0.31 -10.61 16 5 C 0.51 9.88 7.83 -10.99 -0.09 9.80 16 6 O -0.54 -12.88 15.98 5.56 0.09 -12.79 16 7 C -0.13 -2.67 5.64 -27.89 -0.16 -2.82 16 8 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 9 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 10 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.69 13.29 55.43 0.74 -26.96 16 13 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C -0.12 -1.00 5.73 -24.77 -0.14 -1.14 16 18 C 0.04 0.31 5.55 -1.90 -0.01 0.29 16 19 N -0.51 -4.43 5.26 -231.88 -1.22 -5.65 16 20 C 0.08 0.63 4.85 -4.97 -0.02 0.60 16 21 C -0.08 -0.61 5.09 -104.62 -0.53 -1.14 16 22 C -0.11 -0.85 8.75 -39.58 -0.35 -1.20 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 27 C 0.05 0.40 6.00 -2.75 -0.02 0.39 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 6.75 -51.93 -0.35 0.14 16 30 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 33 H 0.40 4.36 6.98 -40.82 -0.28 4.08 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 40 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 41 H 0.08 0.71 7.82 -51.93 -0.41 0.31 16 42 H 0.04 0.31 7.85 -51.93 -0.41 -0.10 16 43 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 44 H 0.04 0.30 7.84 -51.93 -0.41 -0.11 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.05 0.37 7.31 -51.93 -0.38 -0.01 16 51 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 LS Contribution 408.91 15.07 6.16 6.16 Total: -1.00 -34.64 408.91 -11.70 -46.34 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.90 Total: -0.19 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -3.24 Total: -13.12 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.79 Total: -43.22 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.64 -11.70 -46.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.106 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds