Wall clock time and date at job start Tue Mar 31 2020 16:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.27116 * 2 1 4 4 N 1.46504 * 109.47241 * 302.08686 * 3 2 1 5 5 C 1.34775 * 119.99808 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00359 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99942 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47374 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.47367 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99965 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00076 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99546 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47108 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46690 * 120.00025 * 13 11 9 16 16 H 1.48502 * 109.46625 * 239.99490 * 13 11 9 17 17 C 1.54781 * 110.15432 * 237.80168 * 2 1 3 18 18 C 1.54937 * 102.83798 * 262.84810 * 17 2 1 19 19 N 1.48531 * 103.37331 * 322.79651 * 18 17 2 20 20 C 1.46908 * 110.99857 * 159.63431 * 19 18 17 21 21 C 1.50705 * 109.46685 * 69.87722 * 20 19 18 22 22 C 1.38235 * 119.99851 * 269.72798 * 21 20 19 23 23 C 1.38233 * 119.99742 * 179.78879 * 22 21 20 24 24 C 1.38238 * 120.00333 * 0.43871 * 23 22 21 25 25 C 1.38238 * 119.99622 * 359.81569 * 24 23 22 26 26 C 1.38234 * 120.00080 * 90.00072 * 21 20 19 27 27 C 1.47901 * 105.82310 * 39.12709 * 19 18 17 28 28 H 1.09000 * 109.47025 * 297.90651 * 1 2 3 29 29 H 1.08993 * 109.47188 * 57.91650 * 1 2 3 30 30 H 1.09007 * 109.46831 * 177.91348 * 1 2 3 31 31 H 1.09003 * 109.47552 * 62.08942 * 3 2 1 32 32 H 1.09004 * 109.46893 * 182.09015 * 3 2 1 33 33 H 0.96999 * 120.00062 * 0.02562 * 4 3 2 34 34 H 1.09006 * 109.47163 * 300.00340 * 7 5 4 35 35 H 1.09004 * 109.47158 * 60.00035 * 7 5 4 36 36 H 1.09003 * 109.47552 * 299.99868 * 8 7 5 37 37 H 1.09001 * 109.47129 * 60.00406 * 8 7 5 38 38 H 0.96998 * 119.99927 * 179.97438 * 12 11 9 39 39 H 1.08996 * 110.65506 * 144.56348 * 17 2 1 40 40 H 1.09005 * 110.87400 * 21.22897 * 17 2 1 41 41 H 1.09002 * 110.66811 * 204.28059 * 18 17 2 42 42 H 1.09001 * 110.66542 * 81.31698 * 18 17 2 43 43 H 1.08997 * 109.46891 * 189.87443 * 20 19 18 44 44 H 1.08998 * 109.47004 * 309.88012 * 20 19 18 45 45 H 1.07999 * 119.99841 * 359.97438 * 22 21 20 46 46 H 1.08003 * 120.00200 * 180.26994 * 23 22 21 47 47 H 1.07999 * 120.00462 * 179.83355 * 24 23 22 48 48 H 1.07993 * 120.00031 * 179.97438 * 25 24 23 49 49 H 1.08000 * 119.99963 * 359.97225 * 26 21 20 50 50 H 1.09004 * 109.92027 * 94.01264 * 27 19 18 51 51 H 1.08993 * 109.91982 * 215.11956 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4352 0.0000 4 7 1.5410 2.1475 -1.1703 5 6 1.8770 3.4360 -1.3786 6 8 2.6094 4.0056 -0.5976 7 6 1.3427 4.1689 -2.5820 8 6 1.8718 5.6044 -2.5814 9 6 1.3379 6.3372 -3.7852 10 1 0.6866 5.8296 -4.4814 11 6 1.6817 7.6553 -3.9984 12 7 2.4751 8.2733 -3.1509 13 14 1.0204 8.5633 -5.4910 14 1 0.1565 7.6511 -6.2826 15 1 0.2256 9.7357 -5.0450 16 1 2.1541 9.0247 -6.3319 17 6 2.0633 -0.7742 -1.2296 18 6 2.3585 -2.1803 -0.6495 19 7 2.8811 -1.8884 0.7098 20 6 2.7669 -3.0653 1.5817 21 6 3.7436 -4.1208 1.1309 22 6 3.3577 -5.0671 0.2001 23 6 4.2549 -6.0327 -0.2166 24 6 5.5352 -6.0574 0.3042 25 6 5.9194 -5.1143 1.2390 26 6 5.0235 -4.1461 1.6525 27 6 2.0646 -0.7672 1.2236 28 1 -0.3633 0.4810 0.9082 29 1 -0.3633 0.5458 -0.8707 30 1 -0.3633 -1.0271 -0.0374 31 1 1.7348 1.9428 0.9081 32 1 3.1494 1.4202 -0.0375 33 1 0.9550 1.6921 -1.7947 34 1 1.6680 3.6617 -3.4904 35 1 0.2534 4.1836 -2.5443 36 1 1.5461 6.1114 -1.6731 37 1 2.9611 5.5902 -2.6189 38 1 2.7173 9.2004 -3.3011 39 1 2.9759 -0.3136 -1.6078 40 1 1.3059 -0.8308 -2.0114 41 1 3.1106 -2.6936 -1.2488 42 1 1.4450 -2.7721 -0.5917 43 1 2.9900 -2.7790 2.6094 44 1 1.7529 -3.4613 1.5266 45 1 2.3562 -5.0503 -0.2038 46 1 3.9548 -6.7694 -0.9472 47 1 6.2353 -6.8134 -0.0193 48 1 6.9194 -5.1338 1.6462 49 1 5.3237 -3.4092 2.3826 50 1 1.2324 -1.1531 1.8124 51 1 2.6805 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812546954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:55 Heat of formation + Delta-G solvation = -47.253000 kcal Electronic energy + Delta-G solvation = -27367.352827 eV Core-core repulsion = 23650.565106 eV Total energy + Delta-G solvation = -3716.787721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23760 -40.42311 -39.59786 -36.53424 -35.54243 -34.21230 -32.97171 -31.89233 -31.72783 -30.57996 -28.47168 -27.70049 -26.65456 -25.16641 -23.56327 -23.32855 -22.66881 -21.69207 -21.08497 -20.08242 -18.80040 -17.67795 -17.57899 -17.19443 -16.70728 -16.50678 -16.44720 -16.21545 -16.09418 -15.59831 -15.13940 -15.10793 -14.68369 -14.34591 -14.26334 -14.16236 -14.05663 -13.94798 -13.55028 -13.44692 -13.21692 -13.12922 -12.85566 -12.78754 -12.68758 -12.44628 -12.35455 -11.97223 -11.91417 -11.79619 -11.71903 -11.64915 -11.58065 -11.54259 -11.27480 -10.70444 -10.57466 -10.03397 -9.77941 -9.69533 -9.30502 -8.17403 -6.31508 0.45454 0.54537 1.42590 1.44212 1.57502 1.75040 2.27610 2.45861 2.78861 3.15625 3.24728 3.51259 3.53139 3.79561 3.90770 3.98555 4.10664 4.18942 4.20166 4.27641 4.31709 4.34292 4.40183 4.52046 4.54892 4.59224 4.63218 4.67611 4.73050 4.79869 4.80298 4.83753 4.87992 4.97367 5.05572 5.11017 5.15244 5.16250 5.20251 5.24164 5.35513 5.48173 5.54828 5.59314 5.64419 5.66271 5.71945 5.86607 5.93664 6.05727 6.16865 6.18493 6.64162 6.87520 7.37636 7.39697 8.95550 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.001767 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.272765 B =15840.975967 C =16039.886324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C 0.137 3.863 4 N -0.713 5.713 5 C 0.510 3.490 6 O -0.592 6.592 7 C -0.119 4.119 8 C 0.041 3.959 9 C -0.542 4.542 10 H 0.077 0.923 11 C -0.009 4.009 12 N -0.938 5.938 13 Si 0.975 3.025 14 H -0.252 1.252 15 H -0.280 1.280 16 H -0.281 1.281 17 C -0.115 4.115 18 C 0.044 3.956 19 N -0.526 5.526 20 C 0.088 3.912 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.116 4.116 27 C 0.050 3.950 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.414 0.586 34 H 0.104 0.896 35 H 0.105 0.895 36 H -0.018 1.018 37 H -0.020 1.020 38 H 0.262 0.738 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.130 0.870 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.133 0.867 49 H 0.123 0.877 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -34.483 7.512 35.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 C 0.013 3.987 4 N -0.367 5.367 5 C 0.298 3.702 6 O -0.472 6.472 7 C -0.159 4.159 8 C 0.003 3.997 9 C -0.580 4.580 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.799 3.201 14 H -0.175 1.175 15 H -0.206 1.206 16 H -0.207 1.207 17 C -0.153 4.153 18 C -0.084 4.084 19 N -0.250 5.250 20 C -0.040 4.040 21 C -0.087 4.087 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.135 4.135 27 C -0.078 4.078 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.252 0.748 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.000 1.000 37 H -0.001 1.001 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.148 0.852 46 H 0.156 0.844 47 H 0.155 0.845 48 H 0.151 0.849 49 H 0.141 0.859 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.871 -33.810 8.114 34.820 hybrid contribution -0.660 0.658 -0.433 1.028 sum -2.531 -33.152 7.681 34.124 Atomic orbital electron populations 1.21914 0.91943 1.02860 1.02750 1.21572 0.97000 0.92282 0.96268 1.21345 0.97742 0.91522 0.88049 1.45881 1.51681 1.11118 1.28021 1.21334 0.79564 0.82168 0.87130 1.90656 1.38897 1.68599 1.49078 1.21631 1.02518 0.96369 0.95360 1.18698 0.94447 0.91175 0.95354 1.21763 1.29807 0.97086 1.09316 0.90482 1.26163 0.95322 0.98995 1.00124 1.70191 1.37018 1.11968 1.38674 0.85253 0.78163 0.78307 0.78379 1.17512 1.20630 1.20709 1.22682 1.01389 0.94595 0.96645 1.23189 0.98687 0.96631 0.89846 1.64765 1.51764 1.05651 1.02787 1.21208 0.96684 0.88897 0.97194 1.19837 0.95141 0.96118 0.97580 1.21242 1.00335 0.95113 0.97204 1.21415 0.93904 0.99088 1.00319 1.21456 0.96937 0.99334 0.97203 1.21415 1.00177 0.95370 0.98088 1.21213 0.93402 0.98487 1.00386 1.22858 0.96183 0.92846 0.95911 0.92294 0.91629 0.90798 0.92821 0.93460 0.74806 0.87811 0.87656 0.99975 1.00115 0.92892 0.92171 0.88782 0.90770 0.92192 0.89722 0.92606 0.85238 0.84421 0.84549 0.84911 0.85948 0.91545 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.03 71.98 0.58 -1.14 16 2 C -0.07 -1.13 0.67 -51.24 -0.03 -1.16 16 3 C 0.14 3.39 4.27 86.38 0.37 3.76 16 4 N -0.71 -19.09 5.07 -463.06 -2.35 -21.44 16 5 C 0.51 19.99 7.83 87.66 0.69 20.67 16 6 O -0.59 -29.92 15.98 -3.01 -0.05 -29.96 16 7 C -0.12 -4.81 5.64 29.85 0.17 -4.64 16 8 C 0.04 2.31 4.26 29.85 0.13 2.44 16 9 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 10 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 11 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 12 N -0.94 -60.24 13.29 21.45 0.28 -59.95 16 13 Si 0.98 44.60 29.54 68.60 2.03 46.62 16 14 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 C -0.12 -1.75 5.73 31.86 0.18 -1.57 16 18 C 0.04 0.62 5.55 86.65 0.48 1.10 16 19 N -0.53 -8.51 5.26 -887.54 -4.67 -13.18 16 20 C 0.09 1.19 4.85 85.56 0.41 1.60 16 21 C -0.09 -1.31 5.09 -19.86 -0.10 -1.41 16 22 C -0.12 -1.62 8.75 22.27 0.19 -1.42 16 23 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 24 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 25 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 26 C -0.12 -1.86 9.70 22.27 0.22 -1.64 16 27 C 0.05 0.78 6.00 86.45 0.52 1.30 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 6.75 -2.39 -0.02 0.78 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.39 8.12 -2.38 -0.02 1.37 16 33 H 0.41 8.05 6.98 -92.71 -0.65 7.40 16 34 H 0.10 3.67 8.14 -2.38 -0.02 3.65 16 35 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 36 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 37 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 38 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.06 1.19 7.85 -2.39 -0.02 1.17 16 40 H 0.09 1.08 7.86 -2.38 -0.02 1.06 16 41 H 0.07 1.18 7.82 -2.39 -0.02 1.16 16 42 H 0.06 0.66 7.85 -2.39 -0.02 0.64 16 43 H 0.08 1.10 8.06 -2.39 -0.02 1.08 16 44 H 0.06 0.62 7.84 -2.39 -0.02 0.60 16 45 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 47 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 49 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 50 H 0.07 0.83 7.31 -2.38 -0.02 0.81 16 51 H 0.07 1.32 7.69 -2.39 -0.02 1.30 16 Total: -1.00 -78.95 408.91 0.66 -78.29 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.24 Total: 17.24 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 5.17 Total: -17.62 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -6.73 Total: -94.57 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -78.95 0.66 -78.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.041 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds