Wall clock time and date at job start Tue Mar 31 2020 15:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.00936 * 2 1 4 4 C 1.54315 * 109.89118 * 238.87973 * 2 1 3 5 5 C 1.55130 * 103.01898 * 262.88034 * 4 2 1 6 6 C 1.54904 * 101.65690 * 324.34592 * 5 4 2 7 7 N 1.47445 * 109.88376 * 121.11170 * 2 1 3 8 8 C 1.46900 * 111.00054 * 242.66303 * 7 2 1 9 9 C 1.52995 * 109.47215 * 173.23131 * 8 7 2 10 10 N 1.46505 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00210 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99564 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00136 * 179.97438 * 11 10 9 14 14 C 1.50703 * 109.47197 * 179.97438 * 13 11 10 15 15 C 1.37637 * 120.12933 * 265.30317 * 14 13 11 16 16 C 1.38613 * 120.24677 * 180.31949 * 15 14 13 17 17 C 1.38657 * 120.50256 * 359.67263 * 16 15 14 18 18 C 1.37594 * 120.24854 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.12734 * 85.00020 * 14 13 11 20 20 C 1.41399 * 120.24318 * 359.97438 * 19 14 13 21 21 H 1.07998 * 120.00190 * 333.94259 * 20 19 14 22 22 C 1.39945 * 120.00030 * 153.95141 * 20 19 14 23 23 N 1.30826 * 120.00198 * 334.32991 * 22 20 19 24 24 Si 1.86807 * 120.00134 * 154.33330 * 22 20 19 25 25 H 1.48496 * 109.46820 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.46867 * 299.99588 * 24 22 20 27 27 H 1.48499 * 109.46746 * 59.99813 * 24 22 20 28 28 H 1.09000 * 109.47084 * 298.88786 * 1 2 3 29 29 H 1.09005 * 109.46626 * 58.88285 * 1 2 3 30 30 H 1.08999 * 109.47105 * 178.88747 * 1 2 3 31 31 H 1.08997 * 109.46967 * 177.49120 * 3 2 1 32 32 H 1.08999 * 109.46952 * 297.48747 * 3 2 1 33 33 H 1.09004 * 109.47239 * 57.49640 * 3 2 1 34 34 H 1.09005 * 110.70327 * 21.26573 * 4 2 1 35 35 H 1.09003 * 110.70161 * 144.31913 * 4 2 1 36 36 H 1.09004 * 110.99100 * 82.44174 * 5 4 2 37 37 H 1.09005 * 110.99014 * 206.21464 * 5 4 2 38 38 H 1.08999 * 110.37114 * 278.24272 * 6 5 4 39 39 H 1.08998 * 110.37299 * 155.90340 * 6 5 4 40 40 H 1.09008 * 109.47256 * 53.22587 * 8 7 2 41 41 H 1.09002 * 109.47556 * 293.23317 * 8 7 2 42 42 H 1.08995 * 109.47627 * 59.99890 * 9 8 7 43 43 H 1.09004 * 109.46929 * 299.99739 * 9 8 7 44 44 H 0.97002 * 120.00029 * 359.97438 * 10 9 8 45 45 H 1.08997 * 109.47598 * 59.99975 * 13 11 10 46 46 H 1.09004 * 109.46931 * 299.99762 * 13 11 10 47 47 H 1.08004 * 119.87759 * 0.02562 * 15 14 13 48 48 H 1.08007 * 119.74621 * 179.69504 * 16 15 14 49 49 H 1.07994 * 119.87439 * 180.02562 * 17 16 15 50 50 H 1.07998 * 120.12610 * 180.02562 * 18 17 16 51 51 H 0.97003 * 119.99258 * 354.31673 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4377 0.0000 4 6 2.0550 -0.7500 -1.2422 5 6 2.3501 -2.1708 -0.6939 6 6 2.8585 -1.8555 0.7350 7 7 2.0315 -0.7164 1.1871 8 6 2.8028 0.1815 2.0571 9 6 3.1617 -0.5481 3.3531 10 7 3.9304 0.3476 4.2210 11 6 4.3574 -0.0829 5.4246 12 8 4.1049 -1.2116 5.7895 13 6 5.1486 0.8382 6.3171 14 6 5.5009 0.1200 7.5943 15 6 4.7016 0.2561 8.7065 16 6 5.0270 -0.3981 9.8844 17 6 6.1552 -1.2011 9.9550 18 6 6.9653 -1.3566 8.8537 19 6 6.6447 -0.6972 7.6524 20 6 7.4695 -0.8500 6.5141 21 1 7.0550 -0.7191 5.5254 22 6 8.8228 -1.1711 6.6686 23 7 9.4492 -0.8514 7.7717 24 14 9.7349 -2.0562 5.2995 25 1 11.1454 -2.2781 5.7075 26 1 9.0837 -3.3646 5.0361 27 1 9.7009 -1.2291 4.0667 28 1 -0.3633 0.4965 0.8998 29 1 -0.3633 0.5311 -0.8799 30 1 -0.3633 -1.0275 -0.0200 31 1 3.1425 1.4277 0.0450 32 1 1.7322 1.9413 -0.9116 33 1 1.6590 1.9681 0.8667 34 1 1.2926 -0.7878 -2.0204 35 1 2.9650 -0.2825 -1.6186 36 1 1.4422 -2.7731 -0.6613 37 1 3.1225 -2.6644 -1.2837 38 1 3.9111 -1.5737 0.7096 39 1 2.7105 -2.7150 1.3887 40 1 2.2058 1.0633 2.2898 41 1 3.7165 0.4858 1.5465 42 1 3.7587 -1.4298 3.1204 43 1 2.2480 -0.8524 3.8637 44 1 4.1320 1.2505 3.9293 45 1 4.5518 1.7202 6.5495 46 1 6.0626 1.1421 5.8067 47 1 3.8202 0.8787 8.6627 48 1 4.3968 -0.2817 10.7538 49 1 6.3989 -1.7065 10.8777 50 1 7.8433 -1.9829 8.9108 51 1 9.0002 -0.3201 8.4478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837174731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:34 Heat of formation + Delta-G solvation = -27.448387 kcal Electronic energy + Delta-G solvation = -28350.899060 eV Core-core repulsion = 24634.970132 eV Total energy + Delta-G solvation = -3715.928928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.24123 -39.13083 -37.49483 -34.95750 -33.80049 -32.72983 -32.42250 -31.64712 -29.17491 -28.23551 -27.69279 -26.27517 -25.46030 -24.79809 -22.79578 -21.21791 -20.89677 -20.60088 -19.57032 -18.83252 -17.69296 -16.49601 -16.35126 -15.79762 -15.67559 -15.21750 -14.95407 -14.67905 -14.30927 -14.06097 -13.85971 -13.79270 -13.56204 -13.29007 -13.09523 -12.95521 -12.40919 -12.34917 -12.21684 -11.98587 -11.94963 -11.72929 -11.70823 -11.42635 -11.30078 -11.18162 -11.14848 -10.95855 -10.91113 -10.80310 -10.77976 -10.43057 -10.36392 -9.60351 -9.34153 -9.17197 -8.91115 -8.67767 -8.55192 -7.50577 -7.45673 -7.08310 -4.37397 2.79078 2.89422 3.17202 3.30935 3.35219 3.37513 3.39792 3.96037 4.05232 4.27998 4.37279 4.55791 4.63620 4.83715 4.88925 4.92824 5.01900 5.09028 5.23030 5.32140 5.33911 5.42796 5.44860 5.50806 5.56430 5.66917 5.71082 5.72381 5.75253 5.80896 5.90093 5.92337 5.98200 6.02460 6.11037 6.18370 6.22558 6.37532 6.41112 6.71301 6.74323 6.80632 6.91607 7.04966 7.26013 7.47062 7.72397 7.87360 7.90870 7.96269 8.01035 8.25995 8.39843 8.83705 8.89321 8.97522 10.11287 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.002858 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.996026 B = 9794.037549 C =11167.793248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 C -0.166 4.166 4 C -0.133 4.133 5 C -0.129 4.129 6 C 0.038 3.962 7 N -0.517 5.517 8 C 0.040 3.960 9 C 0.124 3.876 10 N -0.746 5.746 11 C 0.515 3.485 12 O -0.520 6.520 13 C -0.070 4.070 14 C -0.184 4.184 15 C -0.069 4.069 16 C -0.253 4.253 17 C -0.087 4.087 18 C -0.216 4.216 19 C 0.116 3.884 20 C -0.518 4.518 21 H 0.072 0.928 22 C 0.041 3.959 23 N -0.799 5.799 24 Si 1.060 2.940 25 H -0.274 1.274 26 H -0.275 1.275 27 H -0.278 1.278 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.394 0.606 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 4.644 -17.788 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.005 3.995 3 C -0.223 4.223 4 C -0.172 4.172 5 C -0.167 4.167 6 C -0.089 4.089 7 N -0.241 5.241 8 C -0.089 4.089 9 C 0.000 4.000 10 N -0.401 5.401 11 C 0.302 3.698 12 O -0.393 6.393 13 C -0.109 4.109 14 C -0.185 4.185 15 C -0.088 4.088 16 C -0.272 4.272 17 C -0.105 4.105 18 C -0.235 4.235 19 C 0.113 3.887 20 C -0.546 4.546 21 H 0.090 0.910 22 C -0.181 4.181 23 N -0.423 5.423 24 Si 0.884 3.116 25 H -0.199 1.199 26 H -0.200 1.200 27 H -0.203 1.203 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.227 0.773 45 H 0.093 0.907 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.122 0.878 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.903 2.957 -17.556 20.877 hybrid contribution -0.769 1.373 -0.144 1.580 sum -11.672 4.330 -17.700 21.640 Atomic orbital electron populations 1.21738 0.93297 1.02104 1.01283 1.21754 0.96102 0.92664 0.89018 1.22405 1.01282 0.96171 1.02486 1.22883 1.01222 0.95768 0.97309 1.22687 1.01633 0.96740 0.95668 1.23133 0.95553 0.94547 0.95697 1.63494 1.35915 1.08634 1.16102 1.22521 0.96726 0.96224 0.93380 1.21135 0.96240 0.93079 0.89593 1.46052 1.58295 1.16835 1.18886 1.21176 0.78876 0.88926 0.80798 1.90686 1.55357 1.20075 1.73207 1.20244 0.99418 0.96443 0.94837 1.19020 1.01245 1.05217 0.93051 1.20361 0.96654 0.98335 0.93416 1.20266 1.01247 1.08206 0.97492 1.20601 0.95088 0.97902 0.96926 1.21130 1.02600 1.05252 0.94510 1.17394 0.91010 0.87933 0.92319 1.20426 0.95676 1.44070 0.94401 0.91031 1.26913 0.95883 0.94606 1.00707 1.70452 1.40421 1.24217 1.07175 0.83721 0.76311 0.77201 0.74401 1.19877 1.20040 1.20318 0.92362 0.92734 0.92230 0.92233 0.92104 0.91649 0.90729 0.91398 0.90639 0.90834 0.93250 0.89799 0.89891 0.93895 0.92002 0.91237 0.77321 0.90652 0.88707 0.89598 0.89454 0.89394 0.87809 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 8.71 37.16 0.32 -0.66 16 2 C 0.09 0.77 1.15 -130.61 -0.15 0.62 16 3 C -0.17 -1.22 7.15 37.16 0.27 -0.95 16 4 C -0.13 -0.98 6.01 -24.92 -0.15 -1.13 16 5 C -0.13 -1.02 7.08 -24.60 -0.17 -1.20 16 6 C 0.04 0.38 5.62 -2.30 -0.01 0.37 16 7 N -0.52 -5.23 4.81 -215.75 -1.04 -6.27 16 8 C 0.04 0.41 3.79 -3.83 -0.01 0.40 16 9 C 0.12 1.71 5.67 -4.04 -0.02 1.69 16 10 N -0.75 -11.05 5.56 -60.30 -0.33 -11.39 16 11 C 0.51 10.29 7.46 -10.99 -0.08 10.21 16 12 O -0.52 -12.92 16.03 5.56 0.09 -12.83 16 13 C -0.07 -1.38 5.18 -29.04 -0.15 -1.53 16 14 C -0.18 -4.48 4.43 -103.91 -0.46 -4.94 16 15 C -0.07 -1.62 9.66 -39.66 -0.38 -2.01 16 16 C -0.25 -5.94 10.05 -39.29 -0.39 -6.34 16 17 C -0.09 -2.12 10.02 -39.66 -0.40 -2.52 16 18 C -0.22 -5.78 7.96 -38.87 -0.31 -6.09 16 19 C 0.12 3.14 5.29 -106.82 -0.57 2.57 16 20 C -0.52 -13.82 8.07 -37.74 -0.30 -14.13 16 21 H 0.07 1.88 6.75 -52.49 -0.35 1.53 16 22 C 0.04 1.04 4.93 -17.34 -0.09 0.96 16 23 N -0.80 -21.40 12.33 55.55 0.69 -20.71 16 24 Si 1.06 22.21 30.00 -169.99 -5.10 17.11 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 6.63 -51.93 -0.34 0.14 16 34 H 0.07 0.48 7.83 -51.93 -0.41 0.07 16 35 H 0.07 0.49 7.85 -51.93 -0.41 0.09 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.78 6.35 -51.92 -0.33 0.45 16 41 H 0.04 0.43 6.65 -51.93 -0.35 0.08 16 42 H 0.06 0.96 7.38 -51.93 -0.38 0.58 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.39 4.49 8.47 -40.82 -0.35 4.15 16 45 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 46 H 0.09 1.86 7.07 -51.93 -0.37 1.49 16 47 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 48 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 49 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 50 H 0.10 2.85 6.53 -52.49 -0.34 2.51 16 51 H 0.30 8.20 6.72 -40.82 -0.27 7.92 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -31.43 398.24 -11.28 -42.71 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.51 Total: 10.05 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -3.07 Total: -24.67 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.69 Total: -38.37 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.43 -11.28 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837174731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.258 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds