Wall clock time and date at job start Tue Mar 31 2020 16:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47056 * 2 1 4 4 C 1.38241 * 120.00289 * 89.99761 * 3 2 1 5 5 C 1.38227 * 120.00113 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00227 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00183 * 179.97438 * 6 5 4 8 8 C 1.53118 * 109.52163 * 240.00302 * 7 6 5 9 9 C 1.53032 * 109.27437 * 182.37975 * 8 7 6 10 10 N 1.46852 * 109.52783 * 59.17619 * 9 8 7 11 11 C 1.46904 * 110.99902 * 174.16113 * 10 9 8 12 12 C 1.50697 * 109.47050 * 293.60943 * 11 10 9 13 13 O 1.21281 * 120.00181 * 353.73531 * 12 11 10 14 14 N 1.34779 * 119.99759 * 173.73669 * 12 11 10 15 15 C 1.46507 * 119.99877 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47070 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99983 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00250 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00031 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46961 * 90.00121 * 20 18 16 22 22 H 1.48498 * 109.47611 * 209.99895 * 20 18 16 23 23 H 1.48504 * 109.47238 * 330.00410 * 20 18 16 24 24 C 1.46846 * 111.19702 * 298.25477 * 10 9 8 25 25 C 1.53042 * 109.51791 * 61.74101 * 24 10 9 26 26 C 1.38237 * 119.99661 * 0.25209 * 6 5 4 27 27 C 1.38229 * 119.99963 * 359.49312 * 26 6 5 28 28 H 1.09007 * 109.47431 * 300.00119 * 1 2 3 29 29 H 1.09002 * 109.47624 * 59.99987 * 1 2 3 30 30 H 1.09002 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46925 * 239.99849 * 2 1 3 32 32 H 1.08998 * 109.46918 * 120.00000 * 2 1 3 33 33 H 1.08003 * 119.99516 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.00082 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.52077 * 0.12810 * 7 6 5 36 36 H 1.08994 * 109.50869 * 62.43554 * 8 7 6 37 37 H 1.08998 * 109.50154 * 302.31369 * 8 7 6 38 38 H 1.09002 * 109.46344 * 299.15639 * 9 8 7 39 39 H 1.08999 * 109.46418 * 179.19738 * 9 8 7 40 40 H 1.09001 * 109.46417 * 173.61069 * 11 10 9 41 41 H 1.08994 * 109.47029 * 53.60884 * 11 10 9 42 42 H 0.96992 * 120.00488 * 359.97438 * 14 12 11 43 43 H 1.08995 * 109.47129 * 299.99907 * 15 14 12 44 44 H 1.08998 * 109.47045 * 59.99773 * 15 14 12 45 45 H 0.96998 * 120.00036 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.46371 * 181.75409 * 24 10 9 47 47 H 1.08993 * 109.46339 * 301.72884 * 24 10 9 48 48 H 1.09005 * 109.49799 * 180.87264 * 25 24 10 49 49 H 1.09001 * 109.50127 * 60.76290 * 25 24 10 50 50 H 1.08002 * 119.99493 * 179.72557 * 26 6 5 51 51 H 1.08002 * 119.99813 * 180.25266 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1971 6 6 2.9544 4.0272 0.0000 7 6 3.4567 5.4481 -0.0001 8 6 2.4489 6.3471 -0.7216 9 6 2.9919 7.7770 -0.7705 10 7 4.2794 7.7892 -1.4767 11 6 4.7639 9.1633 -1.6643 12 6 3.8414 9.8975 -2.6029 13 8 2.9423 9.3025 -3.1583 14 7 4.0156 11.2154 -2.8252 15 6 3.1192 11.9290 -3.7381 16 6 3.5254 13.3784 -3.8101 17 1 4.3673 13.7325 -3.2338 18 6 2.8221 14.2524 -4.6116 19 7 3.1769 15.5173 -4.6748 20 14 1.3663 13.6398 -5.6090 21 1 0.1251 13.7698 -4.8041 22 1 1.2396 14.4485 -6.8480 23 1 1.5767 12.2142 -5.9676 24 6 5.2771 6.9705 -0.7762 25 6 4.8022 5.5164 -0.7275 26 6 2.7185 3.3774 -1.1972 27 6 2.2623 2.0726 -1.1971 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0830 1.5632 2.1325 34 1 2.9043 3.8846 2.1324 35 1 3.5802 5.7908 1.0273 36 1 1.5009 6.3360 -0.1838 37 1 2.2963 5.9809 -1.7369 38 1 3.1312 8.1475 0.2451 39 1 2.2832 8.4168 -1.2962 40 1 5.7685 9.1398 -2.0866 41 1 4.7860 9.6752 -0.7023 42 1 4.7344 11.6913 -2.3808 43 1 3.1823 11.4839 -4.7311 44 1 2.0951 11.8568 -3.3720 45 1 2.6819 16.1322 -5.2385 46 1 6.2280 7.0244 -1.3062 47 1 5.4056 7.3447 0.2393 48 1 5.5357 4.9118 -0.1940 49 1 4.6867 5.1372 -1.7429 50 1 2.8944 3.8881 -2.1324 51 1 2.0820 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860024703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:22 Heat of formation + Delta-G solvation = -30.007323 kcal Electronic energy + Delta-G solvation = -27423.861484 eV Core-core repulsion = 23707.821592 eV Total energy + Delta-G solvation = -3716.039892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.26824 -39.31875 -38.01829 -35.25479 -34.22171 -33.07476 -32.33405 -31.12687 -30.88681 -29.74227 -28.34034 -26.52534 -24.41544 -23.21741 -23.03631 -22.67787 -21.75649 -20.77863 -19.80591 -19.54225 -17.23925 -16.72526 -16.12266 -15.97323 -15.76389 -15.39782 -15.26681 -14.70304 -14.44105 -14.32701 -14.17797 -13.99226 -13.83530 -13.75970 -13.55114 -13.26646 -13.01853 -12.72234 -12.64455 -12.48814 -12.29628 -12.18504 -11.89059 -11.65642 -11.51695 -11.35394 -11.26366 -11.16360 -11.00485 -10.76910 -10.76334 -10.54323 -10.33739 -9.96336 -9.49227 -9.12746 -9.10220 -8.77242 -8.66240 -8.25583 -8.08827 -6.21412 -4.23588 1.13446 1.22064 3.25450 3.29162 3.33672 3.42738 3.53479 3.61017 4.25225 4.33951 4.38888 4.47984 4.56830 4.67310 4.80897 4.83656 4.95319 5.01003 5.08079 5.13929 5.15248 5.20512 5.26270 5.27230 5.30928 5.36437 5.42600 5.50791 5.51799 5.52805 5.60163 5.62675 5.66097 5.76690 5.81557 5.86050 5.91575 5.92109 6.05480 6.13316 6.25444 6.29173 6.40914 6.52040 6.79730 6.82653 7.01486 7.08775 7.13281 7.26294 7.40856 8.15791 8.53846 8.76213 8.98690 9.39074 10.90528 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.001948 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.293077 B =14370.940144 C =15218.862859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.074 4.074 7 C -0.050 4.050 8 C -0.103 4.103 9 C 0.053 3.947 10 N -0.518 5.518 11 C 0.036 3.964 12 C 0.500 3.500 13 O -0.539 6.539 14 N -0.709 5.709 15 C 0.222 3.778 16 C -0.544 4.544 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.893 5.893 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C 0.056 3.944 25 C -0.105 4.105 26 C -0.108 4.108 27 C -0.116 4.116 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.395 0.605 43 H 0.025 0.975 44 H 0.019 0.981 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.032 0.968 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.124 0.876 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -28.755 13.430 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.074 4.074 7 C -0.069 4.069 8 C -0.141 4.141 9 C -0.074 4.074 10 N -0.243 5.243 11 C -0.095 4.095 12 C 0.284 3.716 13 O -0.417 6.417 14 N -0.359 5.359 15 C 0.100 3.900 16 C -0.582 4.582 17 H 0.097 0.903 18 C -0.126 4.126 19 N -0.530 5.530 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.185 1.185 24 C -0.072 4.072 25 C -0.143 4.143 26 C -0.126 4.126 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.228 0.772 43 H 0.043 0.957 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.142 0.858 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.563 -29.184 12.463 31.739 hybrid contribution -0.215 0.584 0.501 0.799 sum 0.348 -28.600 12.964 31.403 Atomic orbital electron populations 1.21752 0.94759 1.01609 1.02315 1.20526 0.96176 0.92812 1.02646 1.19868 0.99677 0.96235 0.93276 1.20962 1.00366 0.94934 0.97370 1.21039 1.00067 0.94800 0.97495 1.19867 0.98807 0.95654 0.93089 1.20263 0.95520 0.91090 1.00003 1.21607 0.97244 0.93911 1.01311 1.22209 0.91786 0.97708 0.95716 1.61547 1.03137 1.09629 1.50014 1.21982 0.99274 0.89489 0.98749 1.20374 0.85614 0.82580 0.83057 1.90637 1.33468 1.67163 1.50447 1.46187 1.34387 1.08210 1.47070 1.19456 0.89499 0.92142 0.88897 1.21104 1.17201 0.90935 1.28921 0.90287 1.24799 0.97245 0.94598 0.95998 1.69881 1.40571 1.03264 1.39292 0.86814 0.82975 0.79836 0.80051 1.19883 1.20911 1.18461 1.22111 0.95195 0.93434 0.96438 1.21629 0.95655 0.95615 1.01364 1.21062 0.98972 0.94500 0.98028 1.21019 1.00027 0.94946 0.97432 0.92593 0.92480 0.92489 0.91156 0.91244 0.86446 0.86334 0.90903 0.91632 0.90566 0.95556 0.88831 0.88109 0.92456 0.77160 0.95733 0.96296 0.92277 0.90537 0.94997 0.91527 0.90672 0.85769 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.08 -0.54 6.06 -27.88 -0.17 -0.71 16 3 C -0.09 -0.77 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 5 C -0.12 -1.04 9.67 -39.59 -0.38 -1.42 16 6 C -0.07 -0.72 4.79 -104.62 -0.50 -1.22 16 7 C -0.05 -0.49 2.43 -91.65 -0.22 -0.71 16 8 C -0.10 -1.19 5.22 -26.65 -0.14 -1.33 16 9 C 0.05 0.72 5.12 -3.83 -0.02 0.70 16 10 N -0.52 -6.97 4.35 -236.12 -1.03 -7.99 16 11 C 0.04 0.50 5.45 -4.98 -0.03 0.47 16 12 C 0.50 9.40 7.36 -10.99 -0.08 9.32 16 13 O -0.54 -12.14 14.71 5.56 0.08 -12.06 16 14 N -0.71 -14.23 5.55 -61.47 -0.34 -14.57 16 15 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 16 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 17 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 20 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 24 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 25 C -0.10 -1.00 5.23 -26.65 -0.14 -1.14 16 26 C -0.11 -1.06 8.67 -39.58 -0.34 -1.40 16 27 C -0.12 -1.05 9.70 -39.59 -0.38 -1.43 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.12 0.89 7.95 -52.49 -0.42 0.47 16 35 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.98 7.31 -51.93 -0.38 0.60 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 1.55 6.06 -51.93 -0.31 1.23 16 40 H 0.10 1.19 7.98 -51.93 -0.41 0.77 16 41 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 42 H 0.40 6.93 8.32 -40.82 -0.34 6.59 16 43 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 44 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.08 0.72 8.01 -51.93 -0.42 0.30 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.78 7.33 -51.93 -0.38 0.40 16 50 H 0.12 1.21 7.06 -52.49 -0.37 0.84 16 51 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 402.67 15.07 6.07 6.07 Total: -1.00 -32.14 402.67 -11.41 -43.55 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.85 Total: 3.16 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.44 Total: -9.27 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.59 Total: -48.32 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.14 -11.41 -43.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860024703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.538 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds