Wall clock time and date at job start Tue Mar 31 2020 16:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47056 * 2 1 4 4 C 1.38241 * 120.00289 * 89.99761 * 3 2 1 5 5 C 1.38227 * 120.00113 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00227 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00183 * 179.97438 * 6 5 4 8 8 C 1.53118 * 109.52163 * 240.00302 * 7 6 5 9 9 C 1.53032 * 109.27437 * 182.37975 * 8 7 6 10 10 N 1.46852 * 109.52783 * 59.17619 * 9 8 7 11 11 C 1.46904 * 110.99902 * 174.16113 * 10 9 8 12 12 C 1.50697 * 109.47050 * 293.60943 * 11 10 9 13 13 O 1.21281 * 120.00181 * 353.73531 * 12 11 10 14 14 N 1.34779 * 119.99759 * 173.73669 * 12 11 10 15 15 C 1.46507 * 119.99877 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47070 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99983 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00250 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00031 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46961 * 90.00121 * 20 18 16 22 22 H 1.48498 * 109.47611 * 209.99895 * 20 18 16 23 23 H 1.48504 * 109.47238 * 330.00410 * 20 18 16 24 24 C 1.46846 * 111.19702 * 298.25477 * 10 9 8 25 25 C 1.53042 * 109.51791 * 61.74101 * 24 10 9 26 26 C 1.38237 * 119.99661 * 0.25209 * 6 5 4 27 27 C 1.38229 * 119.99963 * 359.49312 * 26 6 5 28 28 H 1.09007 * 109.47431 * 300.00119 * 1 2 3 29 29 H 1.09002 * 109.47624 * 59.99987 * 1 2 3 30 30 H 1.09002 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46925 * 239.99849 * 2 1 3 32 32 H 1.08998 * 109.46918 * 120.00000 * 2 1 3 33 33 H 1.08003 * 119.99516 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.00082 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.52077 * 0.12810 * 7 6 5 36 36 H 1.08994 * 109.50869 * 62.43554 * 8 7 6 37 37 H 1.08998 * 109.50154 * 302.31369 * 8 7 6 38 38 H 1.09002 * 109.46344 * 299.15639 * 9 8 7 39 39 H 1.08999 * 109.46418 * 179.19738 * 9 8 7 40 40 H 1.09001 * 109.46417 * 173.61069 * 11 10 9 41 41 H 1.08994 * 109.47029 * 53.60884 * 11 10 9 42 42 H 0.96992 * 120.00488 * 359.97438 * 14 12 11 43 43 H 1.08995 * 109.47129 * 299.99907 * 15 14 12 44 44 H 1.08998 * 109.47045 * 59.99773 * 15 14 12 45 45 H 0.96998 * 120.00036 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.46371 * 181.75409 * 24 10 9 47 47 H 1.08993 * 109.46339 * 301.72884 * 24 10 9 48 48 H 1.09005 * 109.49799 * 180.87264 * 25 24 10 49 49 H 1.09001 * 109.50127 * 60.76290 * 25 24 10 50 50 H 1.08002 * 119.99493 * 179.72557 * 26 6 5 51 51 H 1.08002 * 119.99813 * 180.25266 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1971 6 6 2.9544 4.0272 0.0000 7 6 3.4567 5.4481 -0.0001 8 6 2.4489 6.3471 -0.7216 9 6 2.9919 7.7770 -0.7705 10 7 4.2794 7.7892 -1.4767 11 6 4.7639 9.1633 -1.6643 12 6 3.8414 9.8975 -2.6029 13 8 2.9423 9.3025 -3.1583 14 7 4.0156 11.2154 -2.8252 15 6 3.1192 11.9290 -3.7381 16 6 3.5254 13.3784 -3.8101 17 1 4.3673 13.7325 -3.2338 18 6 2.8221 14.2524 -4.6116 19 7 3.1769 15.5173 -4.6748 20 14 1.3663 13.6398 -5.6090 21 1 0.1251 13.7698 -4.8041 22 1 1.2396 14.4485 -6.8480 23 1 1.5767 12.2142 -5.9676 24 6 5.2771 6.9705 -0.7762 25 6 4.8022 5.5164 -0.7275 26 6 2.7185 3.3774 -1.1972 27 6 2.2623 2.0726 -1.1971 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0830 1.5632 2.1325 34 1 2.9043 3.8846 2.1324 35 1 3.5802 5.7908 1.0273 36 1 1.5009 6.3360 -0.1838 37 1 2.2963 5.9809 -1.7369 38 1 3.1312 8.1475 0.2451 39 1 2.2832 8.4168 -1.2962 40 1 5.7685 9.1398 -2.0866 41 1 4.7860 9.6752 -0.7023 42 1 4.7344 11.6913 -2.3808 43 1 3.1823 11.4839 -4.7311 44 1 2.0951 11.8568 -3.3720 45 1 2.6819 16.1322 -5.2385 46 1 6.2280 7.0244 -1.3062 47 1 5.4056 7.3447 0.2393 48 1 5.5357 4.9118 -0.1940 49 1 4.6867 5.1372 -1.7429 50 1 2.8944 3.8881 -2.1324 51 1 2.0820 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860024703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:22 Heat of formation + Delta-G solvation = -49.270508 kcal Electronic energy + Delta-G solvation = -27424.696798 eV Core-core repulsion = 23707.821592 eV Total energy + Delta-G solvation = -3716.875207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15428 -40.48663 -39.09941 -36.24732 -35.84984 -34.40277 -33.81087 -31.78644 -31.77169 -30.84545 -29.78613 -27.72365 -25.29119 -24.14113 -23.93670 -23.69393 -23.09835 -21.52302 -21.36783 -20.35824 -19.12376 -17.67002 -17.56588 -17.16398 -16.66159 -16.48716 -16.32511 -16.05065 -15.68945 -15.55348 -15.15066 -14.86513 -14.77428 -14.59748 -14.52371 -14.31104 -14.24153 -14.04644 -13.82074 -13.72786 -13.29960 -13.08964 -13.01496 -12.82057 -12.67113 -12.53142 -12.22203 -12.13141 -12.00671 -11.94580 -11.75351 -11.65950 -11.51606 -11.42687 -11.16622 -10.92325 -10.64791 -9.88756 -9.77675 -9.33865 -9.22175 -8.40819 -6.47507 0.46130 0.54580 1.31286 1.33834 1.46547 1.78649 2.26853 2.33371 2.86002 2.94589 3.06059 3.66373 3.78505 3.90741 3.95024 4.04278 4.06063 4.18892 4.25721 4.30431 4.31870 4.40555 4.44106 4.52149 4.52567 4.59506 4.60438 4.69936 4.73784 4.76865 4.80611 4.85852 4.97320 5.02649 5.03661 5.07257 5.08286 5.09306 5.21643 5.24716 5.25935 5.27466 5.38735 5.42437 5.55648 5.58953 5.77186 5.79982 5.98379 6.11702 6.17319 6.20386 6.53813 6.90225 7.16131 7.47774 8.73838 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.001948 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.293077 B =14370.940144 C =15218.862859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.095 4.095 4 C -0.124 4.124 5 C -0.121 4.121 6 C -0.085 4.085 7 C -0.041 4.041 8 C -0.097 4.097 9 C 0.057 3.943 10 N -0.539 5.539 11 C 0.048 3.952 12 C 0.497 3.503 13 O -0.579 6.579 14 N -0.709 5.709 15 C 0.235 3.765 16 C -0.547 4.547 17 H 0.060 0.940 18 C 0.027 3.973 19 N -0.930 5.930 20 Si 0.936 3.064 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.262 1.262 24 C 0.057 3.943 25 C -0.101 4.101 26 C -0.121 4.121 27 C -0.128 4.128 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.408 0.592 43 H 0.010 0.990 44 H 0.008 0.992 45 H 0.272 0.728 46 H 0.089 0.911 47 H 0.048 0.952 48 H 0.084 0.916 49 H 0.060 0.940 50 H 0.115 0.885 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -30.775 14.996 34.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.085 4.085 7 C -0.060 4.060 8 C -0.135 4.135 9 C -0.071 4.071 10 N -0.265 5.265 11 C -0.083 4.083 12 C 0.284 3.716 13 O -0.459 6.459 14 N -0.360 5.360 15 C 0.111 3.889 16 C -0.584 4.584 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.569 5.569 20 Si 0.760 3.240 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.187 1.187 24 C -0.070 4.070 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.146 4.146 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.101 0.899 42 H 0.244 0.756 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.066 0.934 48 H 0.103 0.897 49 H 0.079 0.921 50 H 0.134 0.866 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.135 -31.215 14.054 34.252 hybrid contribution -0.359 1.172 0.044 1.227 sum 0.776 -30.043 14.099 33.196 Atomic orbital electron populations 1.21740 0.94540 1.02304 1.01708 1.20566 0.96271 0.91679 1.03515 1.20150 0.99068 0.97212 0.93061 1.21250 0.99843 0.94934 0.98168 1.21268 0.99715 0.95149 0.97769 1.19898 0.99537 0.95689 0.93368 1.20175 0.94898 0.90680 1.00202 1.21520 0.98038 0.93427 1.00494 1.22087 0.91336 0.97935 0.95735 1.61500 1.03898 1.09741 1.51336 1.21937 0.98568 0.89369 0.98437 1.21325 0.85562 0.81805 0.82877 1.90623 1.35387 1.67825 1.52091 1.46040 1.34262 1.08950 1.46729 1.19030 0.89859 0.90866 0.89185 1.21310 1.16487 0.92359 1.28286 0.92151 1.25585 0.99877 0.94728 0.97152 1.69978 1.42068 1.04412 1.40459 0.85873 0.79958 0.79124 0.79015 1.19031 1.19747 1.18689 1.22199 0.94655 0.92990 0.97110 1.21605 0.95956 0.95498 1.00806 1.21110 0.99797 0.95052 0.97988 1.21205 1.00206 0.94865 0.98320 0.92889 0.93390 0.91164 0.90619 0.90063 0.84575 0.84764 0.89677 0.91520 0.92657 0.94132 0.92636 0.85477 0.89911 0.75638 0.97252 0.97376 0.91856 0.89257 0.93367 0.89737 0.92102 0.86650 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 71.98 0.71 -0.84 16 2 C -0.08 -0.92 6.06 29.85 0.18 -0.74 16 3 C -0.09 -1.48 5.13 -19.87 -0.10 -1.58 16 4 C -0.12 -1.86 9.70 22.27 0.22 -1.64 16 5 C -0.12 -1.94 9.67 22.27 0.22 -1.73 16 6 C -0.08 -1.56 4.79 -19.86 -0.10 -1.65 16 7 C -0.04 -0.74 2.43 -11.46 -0.03 -0.76 16 8 C -0.10 -2.23 5.22 30.64 0.16 -2.07 16 9 C 0.06 1.49 5.12 86.32 0.44 1.94 16 10 N -0.54 -13.68 4.35 -900.93 -3.92 -17.59 16 11 C 0.05 1.20 5.45 85.56 0.47 1.67 16 12 C 0.50 18.48 7.36 87.66 0.65 19.13 16 13 O -0.58 -26.49 14.71 -3.03 -0.04 -26.54 16 14 N -0.71 -28.25 5.55 -466.79 -2.59 -30.84 16 15 C 0.23 11.65 4.50 85.63 0.38 12.03 16 16 C -0.55 -30.37 9.83 25.60 0.25 -30.12 16 17 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 18 C 0.03 1.53 5.47 84.65 0.46 2.00 16 19 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 20 Si 0.94 44.66 27.47 68.60 1.88 46.54 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 24 C 0.06 1.02 5.46 86.33 0.47 1.49 16 25 C -0.10 -1.73 5.23 30.65 0.16 -1.57 16 26 C -0.12 -2.38 8.67 22.27 0.19 -2.19 16 27 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 28 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 32 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 33 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.13 1.66 7.95 -2.91 -0.02 1.64 16 35 H 0.08 1.33 7.88 -2.38 -0.02 1.31 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.49 7.31 -2.39 -0.02 1.47 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 1.88 6.06 -2.39 -0.01 1.87 16 40 H 0.13 2.58 7.98 -2.39 -0.02 2.56 16 41 H 0.08 1.71 8.12 -2.39 -0.02 1.70 16 42 H 0.41 14.02 8.32 -92.71 -0.77 13.25 16 43 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 44 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 45 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.09 1.38 8.01 -2.39 -0.02 1.36 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.06 1.22 7.33 -2.39 -0.02 1.21 16 50 H 0.12 2.37 7.06 -2.91 -0.02 2.35 16 51 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -70.18 402.67 0.66 -69.52 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.07 Total: 23.07 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 4.95 Total: -8.69 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -6.21 Total: -103.90 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -70.18 0.66 -69.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860024703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.250 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds