Wall clock time and date at job start Tue Mar 31 2020 16:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46859 * 2 1 4 4 C 1.38230 * 120.00337 * 90.00225 * 3 2 1 5 5 C 1.38240 * 120.00253 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99631 * 359.95030 * 5 4 3 7 7 C 1.50703 * 119.99860 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47107 * 89.99965 * 7 6 5 9 9 C 1.46897 * 111.00075 * 294.30299 * 8 7 6 10 10 C 1.53241 * 109.33917 * 172.74655 * 9 8 7 11 11 N 1.47077 * 108.52322 * 53.82658 * 10 9 8 12 12 C 1.34781 * 120.87859 * 128.79077 * 11 10 9 13 13 O 1.21277 * 119.99792 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99973 * 0.02562 * 12 11 10 15 15 C 1.53003 * 109.46794 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46794 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99684 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47354 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46703 * 120.00567 * 20 18 16 23 23 H 1.48505 * 109.47024 * 239.99914 * 20 18 16 24 24 C 1.47077 * 118.23856 * 308.81948 * 11 10 9 25 25 C 1.46901 * 111.00103 * 169.99758 * 8 7 6 26 26 C 1.38234 * 120.00312 * 0.27932 * 6 5 4 27 27 C 1.38235 * 119.99933 * 359.51395 * 26 6 5 28 28 H 1.09001 * 109.47349 * 299.99921 * 1 2 3 29 29 H 1.08995 * 109.47638 * 60.00179 * 1 2 3 30 30 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47349 * 240.00079 * 2 1 3 32 32 H 1.08999 * 109.47388 * 119.99369 * 2 1 3 33 33 H 1.07999 * 120.00198 * 359.97108 * 4 3 2 34 34 H 1.07996 * 119.99763 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47152 * 330.00052 * 7 6 5 36 36 H 1.09001 * 109.46980 * 210.00152 * 7 6 5 37 37 H 1.08994 * 109.49273 * 292.70632 * 9 8 7 38 38 H 1.08999 * 109.49594 * 52.78809 * 9 8 7 39 39 H 1.09008 * 109.62553 * 294.11947 * 10 9 8 40 40 H 1.08997 * 109.62818 * 173.54023 * 10 9 8 41 41 H 1.08994 * 109.47550 * 300.00009 * 14 12 11 42 42 H 1.09005 * 109.46725 * 60.00420 * 14 12 11 43 43 H 1.08994 * 109.47537 * 300.00578 * 15 14 12 44 44 H 1.09005 * 109.46684 * 60.00955 * 15 14 12 45 45 H 0.97009 * 119.99564 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.62754 * 291.46722 * 24 11 10 47 47 H 1.09000 * 109.78659 * 170.98627 * 24 11 10 48 48 H 1.08993 * 109.49516 * 307.21612 * 25 8 7 49 49 H 1.09000 * 109.48780 * 67.29232 * 25 8 7 50 50 H 1.07998 * 120.00015 * 179.72855 * 26 6 5 51 51 H 1.07997 * 120.00521 * 180.25191 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7229 3.3761 1.1970 6 6 2.9537 4.0275 -0.0001 7 6 3.4560 5.4484 -0.0002 8 7 4.9249 5.4484 0.0003 9 6 5.4510 4.8843 1.2504 10 6 6.9720 4.7345 1.1391 11 7 7.5426 6.0345 0.7549 12 6 8.5607 6.5764 1.4523 13 8 9.0188 7.6495 1.1216 14 6 9.1298 5.8488 2.6430 15 6 10.2665 6.6741 3.2495 16 6 10.8352 5.9468 4.4406 17 1 10.4269 4.9913 4.7353 18 6 11.8766 6.5012 5.1541 19 7 12.3733 7.6649 4.7955 20 14 12.5819 5.5993 6.6301 21 1 11.8534 4.3198 6.8229 22 1 14.0214 5.3187 6.3971 23 1 12.4321 6.4425 7.8434 24 6 6.9724 6.7277 -0.4102 25 6 5.4514 6.7990 -0.2380 26 6 2.7187 3.3775 -1.1973 27 6 2.2626 2.0725 -1.1972 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.0823 1.5637 2.1324 34 1 2.9025 3.8853 2.1323 35 1 3.0923 5.9624 0.8896 36 1 3.0929 5.9620 -0.8904 37 1 5.2107 5.5500 2.0793 38 1 5.0012 3.9071 1.4262 39 1 7.2120 3.9904 0.3796 40 1 7.3808 4.4251 2.1010 41 1 8.3477 5.7041 3.3883 42 1 9.5141 4.8791 2.3266 43 1 11.0485 6.8185 2.5041 44 1 9.8825 7.6440 3.5659 45 1 13.1062 8.0548 5.2973 46 1 7.2126 6.1752 -1.3187 47 1 7.3811 7.7360 -0.4761 48 1 5.0019 7.2104 -1.1416 49 1 5.2111 7.4381 0.6117 50 1 2.8949 3.8879 -2.1325 51 1 2.0829 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881618722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:52 Heat of formation + Delta-G solvation = -20.122160 kcal Electronic energy + Delta-G solvation = -27684.451421 eV Core-core repulsion = 23968.840182 eV Total energy + Delta-G solvation = -3715.611239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.25186 -39.54651 -37.83540 -35.24887 -33.85336 -33.49698 -31.69471 -31.19687 -30.56798 -30.45551 -27.80392 -25.84780 -24.84190 -23.87899 -22.92918 -22.89199 -21.79161 -20.74273 -20.47141 -18.44608 -17.11647 -16.51663 -16.09740 -15.98226 -15.67565 -15.35262 -15.28227 -15.07726 -14.94939 -14.49988 -14.39331 -14.03774 -13.97891 -13.68002 -13.41678 -13.22156 -13.08700 -12.63447 -12.32157 -12.20379 -12.08300 -12.00364 -11.91305 -11.54602 -11.42931 -11.33595 -11.30698 -11.09440 -11.06260 -10.94023 -10.88087 -10.55808 -9.95232 -9.60266 -9.16376 -9.13654 -8.96675 -8.88031 -8.67452 -8.33039 -8.24638 -5.95271 -3.99509 1.04018 1.17208 3.21277 3.25147 3.32929 3.39604 3.41344 3.43791 3.89229 4.37522 4.47324 4.47553 4.56559 4.71614 4.75086 4.78345 4.91036 4.97233 4.99261 5.11509 5.16055 5.20084 5.21535 5.24132 5.36006 5.39032 5.39694 5.41778 5.51811 5.53604 5.57756 5.64343 5.73472 5.79894 5.83644 5.84530 5.89327 6.02187 6.16160 6.21515 6.23753 6.35952 6.36756 6.69408 6.72749 6.79019 6.83753 6.93477 7.75724 7.79161 7.87595 8.08293 8.39622 8.76505 9.09138 9.63910 11.15708 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.002204 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.056717 B =12701.022393 C =14190.636197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.080 4.080 7 C 0.094 3.906 8 N -0.531 5.531 9 C 0.036 3.964 10 C 0.115 3.885 11 N -0.627 5.627 12 C 0.513 3.487 13 O -0.535 6.535 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.117 3.883 25 C 0.043 3.957 26 C -0.095 4.095 27 C -0.119 4.119 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.039 0.961 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.385 -12.826 -12.728 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.136 4.136 5 C -0.129 4.129 6 C -0.081 4.081 7 C -0.034 4.034 8 N -0.256 5.256 9 C -0.092 4.092 10 C -0.008 4.008 11 N -0.364 5.364 12 C 0.303 3.697 13 O -0.411 6.411 14 C -0.168 4.168 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.007 4.007 25 C -0.085 4.085 26 C -0.113 4.113 27 C -0.137 4.137 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.102 0.898 49 H 0.057 0.943 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.809 -12.375 -13.230 31.532 hybrid contribution 0.087 0.014 1.470 1.473 sum -25.722 -12.361 -11.760 30.866 Atomic orbital electron populations 1.21745 0.94770 1.01673 1.02182 1.20552 0.96124 0.92784 1.02894 1.19895 0.99053 0.96157 0.93249 1.20984 1.00228 0.94842 0.97543 1.21065 0.99388 0.94944 0.97547 1.19694 0.99266 0.95856 0.93251 1.21033 0.87675 0.93013 1.01637 1.61963 1.06249 1.22075 1.35329 1.22616 0.95717 1.00706 0.90197 1.21761 0.91807 0.85379 1.01879 1.48358 1.35851 1.21401 1.30752 1.21586 0.78072 0.85811 0.84195 1.90652 1.59327 1.22109 1.68963 1.21874 1.00970 1.00540 0.93400 1.18913 0.91301 0.94751 0.95135 1.21256 1.17106 1.05477 1.12562 0.92567 1.25034 0.96787 0.94976 0.97657 1.70013 1.25836 1.16924 1.40027 0.86538 0.78948 0.79766 0.82718 1.19746 1.21014 1.21039 1.21540 0.91163 0.99253 0.88708 1.22509 0.95948 0.88883 1.01200 1.20977 0.98208 0.94526 0.97597 1.21009 1.00356 0.94919 0.97447 0.92579 0.92600 0.92435 0.91065 0.91026 0.86214 0.86269 0.93934 0.89867 0.94237 0.89228 0.91009 0.88732 0.90409 0.90256 0.95798 0.95886 0.93024 0.91375 0.88780 0.89773 0.94261 0.86045 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.41 16 2 C -0.09 -0.51 6.06 -27.88 -0.17 -0.68 16 3 C -0.08 -0.65 5.13 -104.62 -0.54 -1.18 16 4 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 5 C -0.11 -0.94 7.86 -39.58 -0.31 -1.25 16 6 C -0.08 -0.70 4.89 -104.62 -0.51 -1.21 16 7 C 0.09 0.80 5.12 -4.98 -0.03 0.78 16 8 N -0.53 -5.43 4.62 -235.77 -1.09 -6.52 16 9 C 0.04 0.39 5.34 -3.70 -0.02 0.37 16 10 C 0.12 1.42 6.50 -3.60 -0.02 1.40 16 11 N -0.63 -9.72 3.01 -172.46 -0.52 -10.24 16 12 C 0.51 10.34 7.71 -10.98 -0.08 10.25 16 13 O -0.54 -12.97 15.44 5.56 0.09 -12.88 16 14 C -0.13 -2.67 4.00 -27.88 -0.11 -2.78 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.12 1.55 6.59 -3.61 -0.02 1.53 16 25 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 26 C -0.09 -0.79 9.70 -39.58 -0.38 -1.17 16 27 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.92 7.93 -52.49 -0.42 0.50 16 35 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 36 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.87 5.66 -51.93 -0.29 0.58 16 39 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.09 1.14 6.02 -51.93 -0.31 0.83 16 41 H 0.08 1.48 7.66 -51.93 -0.40 1.09 16 42 H 0.08 1.52 8.00 -51.93 -0.42 1.11 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 1.40 7.07 -51.93 -0.37 1.03 16 48 H 0.08 0.73 7.99 -51.93 -0.41 0.31 16 49 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 405.77 15.07 6.11 6.11 Total: -1.00 -34.26 405.77 -11.74 -46.00 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.90 Total: -2.87 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.15 Total: -9.48 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.87 Total: -43.66 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.26 -11.74 -46.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881618722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.880 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds