Wall clock time and date at job start Tue Mar 31 2020 16:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46859 * 2 1 4 4 C 1.38230 * 120.00337 * 90.00225 * 3 2 1 5 5 C 1.38240 * 120.00253 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99631 * 359.95030 * 5 4 3 7 7 C 1.50703 * 119.99860 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47107 * 89.99965 * 7 6 5 9 9 C 1.46897 * 111.00075 * 294.30299 * 8 7 6 10 10 C 1.53241 * 109.33917 * 172.74655 * 9 8 7 11 11 N 1.47077 * 108.52322 * 53.82658 * 10 9 8 12 12 C 1.34781 * 120.87859 * 128.79077 * 11 10 9 13 13 O 1.21277 * 119.99792 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99973 * 0.02562 * 12 11 10 15 15 C 1.53003 * 109.46794 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46794 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99684 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47354 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46703 * 120.00567 * 20 18 16 23 23 H 1.48505 * 109.47024 * 239.99914 * 20 18 16 24 24 C 1.47077 * 118.23856 * 308.81948 * 11 10 9 25 25 C 1.46901 * 111.00103 * 169.99758 * 8 7 6 26 26 C 1.38234 * 120.00312 * 0.27932 * 6 5 4 27 27 C 1.38235 * 119.99933 * 359.51395 * 26 6 5 28 28 H 1.09001 * 109.47349 * 299.99921 * 1 2 3 29 29 H 1.08995 * 109.47638 * 60.00179 * 1 2 3 30 30 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47349 * 240.00079 * 2 1 3 32 32 H 1.08999 * 109.47388 * 119.99369 * 2 1 3 33 33 H 1.07999 * 120.00198 * 359.97108 * 4 3 2 34 34 H 1.07996 * 119.99763 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47152 * 330.00052 * 7 6 5 36 36 H 1.09001 * 109.46980 * 210.00152 * 7 6 5 37 37 H 1.08994 * 109.49273 * 292.70632 * 9 8 7 38 38 H 1.08999 * 109.49594 * 52.78809 * 9 8 7 39 39 H 1.09008 * 109.62553 * 294.11947 * 10 9 8 40 40 H 1.08997 * 109.62818 * 173.54023 * 10 9 8 41 41 H 1.08994 * 109.47550 * 300.00009 * 14 12 11 42 42 H 1.09005 * 109.46725 * 60.00420 * 14 12 11 43 43 H 1.08994 * 109.47537 * 300.00578 * 15 14 12 44 44 H 1.09005 * 109.46684 * 60.00955 * 15 14 12 45 45 H 0.97009 * 119.99564 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.62754 * 291.46722 * 24 11 10 47 47 H 1.09000 * 109.78659 * 170.98627 * 24 11 10 48 48 H 1.08993 * 109.49516 * 307.21612 * 25 8 7 49 49 H 1.09000 * 109.48780 * 67.29232 * 25 8 7 50 50 H 1.07998 * 120.00015 * 179.72855 * 26 6 5 51 51 H 1.07997 * 120.00521 * 180.25191 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7229 3.3761 1.1970 6 6 2.9537 4.0275 -0.0001 7 6 3.4560 5.4484 -0.0002 8 7 4.9249 5.4484 0.0003 9 6 5.4510 4.8843 1.2504 10 6 6.9720 4.7345 1.1391 11 7 7.5426 6.0345 0.7549 12 6 8.5607 6.5764 1.4523 13 8 9.0188 7.6495 1.1216 14 6 9.1298 5.8488 2.6430 15 6 10.2665 6.6741 3.2495 16 6 10.8352 5.9468 4.4406 17 1 10.4269 4.9913 4.7353 18 6 11.8766 6.5012 5.1541 19 7 12.3733 7.6649 4.7955 20 14 12.5819 5.5993 6.6301 21 1 11.8534 4.3198 6.8229 22 1 14.0214 5.3187 6.3971 23 1 12.4321 6.4425 7.8434 24 6 6.9724 6.7277 -0.4102 25 6 5.4514 6.7990 -0.2380 26 6 2.7187 3.3775 -1.1973 27 6 2.2626 2.0725 -1.1972 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.0823 1.5637 2.1324 34 1 2.9025 3.8853 2.1323 35 1 3.0923 5.9624 0.8896 36 1 3.0929 5.9620 -0.8904 37 1 5.2107 5.5500 2.0793 38 1 5.0012 3.9071 1.4262 39 1 7.2120 3.9904 0.3796 40 1 7.3808 4.4251 2.1010 41 1 8.3477 5.7041 3.3883 42 1 9.5141 4.8791 2.3266 43 1 11.0485 6.8185 2.5041 44 1 9.8825 7.6440 3.5659 45 1 13.1062 8.0548 5.2973 46 1 7.2126 6.1752 -1.3187 47 1 7.3811 7.7360 -0.4761 48 1 5.0019 7.2104 -1.1416 49 1 5.2111 7.4381 0.6117 50 1 2.8949 3.8879 -2.1325 51 1 2.0829 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881618722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:50 Heat of formation + Delta-G solvation = -40.072770 kcal Electronic energy + Delta-G solvation = -27685.316544 eV Core-core repulsion = 23968.840182 eV Total energy + Delta-G solvation = -3716.476363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.30872 -40.46210 -38.95367 -36.18794 -35.61960 -34.65954 -33.22736 -32.10622 -31.70047 -31.17876 -28.86718 -27.53447 -25.77146 -24.90092 -23.93003 -23.49728 -23.15864 -21.79325 -21.30196 -19.80008 -18.87312 -17.78547 -17.17158 -16.83527 -16.73447 -16.56064 -16.46390 -16.22276 -16.07722 -15.75464 -15.32340 -14.90608 -14.76116 -14.51353 -14.47078 -14.21856 -14.17565 -13.84581 -13.67458 -13.47745 -13.20343 -12.88939 -12.85772 -12.80227 -12.61326 -12.48107 -12.33417 -12.22358 -12.12112 -11.99649 -11.96039 -11.60531 -11.59910 -11.53483 -11.29249 -10.69432 -10.58715 -9.84706 -9.70878 -9.48646 -9.22221 -8.18734 -6.32912 0.44231 0.58185 1.41708 1.43354 1.56685 1.65085 1.99352 2.42529 2.69121 3.14204 3.15198 3.65991 3.77040 3.90906 3.94415 3.98261 4.04648 4.18934 4.21337 4.24380 4.30813 4.34615 4.43054 4.49424 4.52067 4.54383 4.54958 4.63986 4.69620 4.73952 4.77110 4.78333 4.83689 4.84201 5.01760 5.07444 5.10121 5.12231 5.21083 5.28277 5.40873 5.46273 5.55098 5.58313 5.60453 5.74990 5.80459 5.83734 5.95371 5.99399 6.16302 6.19342 6.38711 6.85360 7.22645 7.37328 8.94201 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.002204 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.056717 B =12701.022393 C =14190.636197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.089 4.089 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.091 4.091 7 C 0.097 3.903 8 N -0.533 5.533 9 C 0.043 3.957 10 C 0.109 3.891 11 N -0.616 5.616 12 C 0.510 3.490 13 O -0.590 6.590 14 C -0.115 4.115 15 C 0.043 3.957 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.937 5.937 20 Si 0.975 3.025 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.112 3.888 25 C 0.053 3.947 26 C -0.102 4.102 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.102 0.898 43 H -0.018 1.018 44 H -0.019 1.019 45 H 0.263 0.737 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.027 0.973 50 H 0.130 0.870 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.207 -15.672 -12.559 34.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.146 4.146 5 C -0.138 4.138 6 C -0.091 4.091 7 C -0.029 4.029 8 N -0.257 5.257 9 C -0.086 4.086 10 C -0.013 4.013 11 N -0.350 5.350 12 C 0.301 3.699 13 O -0.470 6.470 14 C -0.155 4.155 15 C 0.005 3.995 16 C -0.579 4.579 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.175 1.175 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.010 4.010 25 C -0.076 4.076 26 C -0.121 4.121 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.000 1.000 44 H -0.001 1.001 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.129 0.871 49 H 0.045 0.955 50 H 0.148 0.852 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.698 -15.276 -13.084 34.231 hybrid contribution 0.574 0.869 1.334 1.692 sum -27.124 -14.407 -11.750 32.884 Atomic orbital electron populations 1.21725 0.94304 1.02272 1.01848 1.20587 0.96469 0.91840 1.03415 1.20154 0.98599 0.96981 0.93180 1.21193 1.00232 0.94905 0.98243 1.21195 0.99605 0.95250 0.97749 1.19739 0.99932 0.95892 0.93537 1.21044 0.86294 0.93313 1.02296 1.61972 1.07469 1.21396 1.34886 1.22544 0.94362 1.01376 0.90285 1.22044 0.92923 0.83755 1.02593 1.48332 1.34120 1.22234 1.30274 1.21393 0.78981 0.85140 0.84392 1.90632 1.61507 1.24387 1.70456 1.21627 0.99436 1.00128 0.94281 1.18696 0.92304 0.94063 0.94421 1.21728 1.17275 1.06191 1.12726 0.90533 1.26165 0.97275 0.95788 1.01352 1.70193 1.26612 1.19072 1.41878 0.85253 0.78040 0.78936 0.77885 1.17501 1.20622 1.20612 1.21706 0.92931 0.98155 0.88221 1.22418 0.93877 0.89257 1.02038 1.21158 0.98162 0.94845 0.97887 1.21242 1.00173 0.94974 0.98161 0.93014 0.92822 0.91392 0.90448 0.90619 0.85187 0.85865 0.93952 0.88540 0.94985 0.87803 0.89612 0.88220 0.88094 0.87985 0.99982 1.00054 0.92863 0.89927 0.90885 0.87122 0.95458 0.85171 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 71.98 0.71 -0.55 16 2 C -0.09 -0.85 6.06 29.85 0.18 -0.67 16 3 C -0.09 -1.21 5.13 -19.86 -0.10 -1.31 16 4 C -0.13 -1.82 9.70 22.27 0.22 -1.61 16 5 C -0.12 -1.80 7.86 22.27 0.18 -1.63 16 6 C -0.09 -1.39 4.89 -19.87 -0.10 -1.49 16 7 C 0.10 1.44 5.12 85.56 0.44 1.88 16 8 N -0.53 -9.65 4.62 -899.84 -4.16 -13.80 16 9 C 0.04 0.82 5.34 86.38 0.46 1.29 16 10 C 0.11 2.46 6.50 86.35 0.56 3.03 16 11 N -0.62 -18.68 3.01 -817.94 -2.46 -21.14 16 12 C 0.51 21.02 7.71 87.66 0.68 21.69 16 13 O -0.59 -30.17 15.44 -3.02 -0.05 -30.21 16 14 C -0.12 -4.82 4.00 29.85 0.12 -4.70 16 15 C 0.04 2.44 4.26 29.85 0.13 2.57 16 16 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 17 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 19 N -0.94 -60.14 13.29 21.45 0.28 -59.86 16 20 Si 0.98 44.63 29.54 68.60 2.03 46.66 16 21 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 C 0.11 2.92 6.59 86.35 0.57 3.49 16 25 C 0.05 1.04 5.62 86.38 0.49 1.52 16 26 C -0.10 -1.48 9.70 22.27 0.22 -1.27 16 27 C -0.13 -1.75 9.70 22.27 0.22 -1.53 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 32 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 33 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.12 1.68 7.93 -2.91 -0.02 1.66 16 35 H 0.04 0.64 8.07 -2.39 -0.02 0.62 16 36 H 0.10 1.18 7.91 -2.39 -0.02 1.16 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.10 1.75 5.66 -2.39 -0.01 1.74 16 39 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.10 2.16 6.02 -2.39 -0.01 2.15 16 41 H 0.10 3.73 7.66 -2.39 -0.02 3.71 16 42 H 0.10 3.79 8.00 -2.38 -0.02 3.77 16 43 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 44 H -0.02 -1.22 8.10 -2.38 -0.02 -1.24 16 45 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.07 2.24 7.07 -2.39 -0.02 2.22 16 48 H 0.11 1.63 7.99 -2.39 -0.02 1.61 16 49 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 51 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -77.32 405.77 2.18 -75.14 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.88 Total: 13.51 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 5.65 Total: -10.29 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -6.33 Total: -94.80 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -77.32 2.18 -75.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881618722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.069 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds