Wall clock time and date at job start Tue Mar 31 2020 16:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 110.27116 * 2 1 4 4 C 1.54600 * 110.30773 * 237.80896 * 2 1 3 5 5 C 1.54938 * 102.91848 * 263.03673 * 4 2 1 6 6 N 1.48528 * 103.22867 * 322.58781 * 5 4 2 7 7 C 1.46904 * 110.99899 * 159.72266 * 6 5 4 8 8 C 1.52998 * 109.47334 * 52.59972 * 7 6 5 9 9 N 1.46493 * 109.47257 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00044 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00303 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00150 * 180.02562 * 10 9 8 13 13 C 1.50693 * 109.47265 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12761 * 265.00113 * 13 12 10 15 15 C 1.38618 * 120.24953 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.49965 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.25148 * 0.02562 * 16 15 14 18 18 C 1.40703 * 120.13192 * 84.72543 * 13 12 10 19 19 C 1.41398 * 120.23851 * 359.97438 * 18 13 12 20 20 H 1.08004 * 119.99998 * 333.88961 * 19 18 13 21 21 C 1.39947 * 120.00082 * 153.89527 * 19 18 13 22 22 N 1.30827 * 119.99683 * 343.72043 * 21 19 18 23 23 Si 1.86798 * 120.00158 * 163.71284 * 21 19 18 24 24 H 1.48497 * 109.46823 * 60.00429 * 23 21 19 25 25 H 1.48502 * 109.46794 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47482 * 300.00194 * 23 21 19 27 27 C 1.47898 * 105.81977 * 39.20856 * 6 5 4 28 28 H 1.08999 * 109.47028 * 297.90979 * 1 2 3 29 29 H 1.09002 * 109.47403 * 57.90973 * 1 2 3 30 30 H 1.08998 * 109.46788 * 177.90797 * 1 2 3 31 31 H 1.09001 * 109.46855 * 182.08676 * 3 2 1 32 32 H 1.08996 * 109.47095 * 302.09182 * 3 2 1 33 33 H 1.08999 * 109.47072 * 62.08890 * 3 2 1 34 34 H 1.08995 * 110.72430 * 21.39942 * 4 2 1 35 35 H 1.09003 * 110.72046 * 144.50080 * 4 2 1 36 36 H 1.08999 * 110.66500 * 204.15258 * 5 4 2 37 37 H 1.09001 * 110.66510 * 81.02407 * 5 4 2 38 38 H 1.08998 * 109.46836 * 172.60541 * 7 6 5 39 39 H 1.09006 * 109.46620 * 292.60288 * 7 6 5 40 40 H 1.08999 * 109.47206 * 300.00418 * 8 7 6 41 41 H 1.09007 * 109.46600 * 60.00206 * 8 7 6 42 42 H 0.97005 * 119.99727 * 0.02562 * 9 8 7 43 43 H 1.09009 * 109.47038 * 299.99998 * 12 10 9 44 44 H 1.09000 * 109.46930 * 59.99648 * 12 10 9 45 45 H 1.07997 * 119.87533 * 359.97438 * 14 13 12 46 46 H 1.07997 * 119.74890 * 179.97438 * 15 14 13 47 47 H 1.07998 * 119.87498 * 179.97438 * 16 15 14 48 48 H 1.07998 * 120.12961 * 179.97438 * 17 16 15 49 49 H 0.96999 * 119.99734 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.91815 * 94.02244 * 27 6 5 51 51 H 1.09004 * 109.91248 * 215.11750 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0666 -0.7724 -1.2270 5 6 2.3585 -2.1802 -0.6496 6 7 2.8810 -1.8884 0.7098 7 6 2.7670 -3.0653 1.5815 8 6 3.4143 -4.2712 0.8976 9 7 3.3001 -5.4450 1.7666 10 6 3.8040 -6.6299 1.3684 11 8 4.3524 -6.7243 0.2908 12 6 3.6860 -7.8375 2.2621 13 6 4.3248 -9.0249 1.5891 14 6 3.5555 -9.9007 0.8573 15 6 4.1405 -10.9935 0.2367 16 6 5.5045 -11.2177 0.3455 17 6 6.2929 -10.3558 1.0729 18 6 5.7108 -9.2393 1.7015 19 6 6.5121 -8.3427 2.4455 20 1 6.2002 -7.3163 2.5707 21 6 7.7093 -8.7853 3.0194 22 7 7.9379 -10.0669 3.1490 23 14 8.9808 -7.5461 3.6000 24 1 8.3828 -6.6757 4.6440 25 1 10.1507 -8.2653 4.1650 26 1 9.4198 -6.7125 2.4523 27 6 2.0645 -0.7673 1.2235 28 1 -0.3633 0.4810 0.9081 29 1 -0.3634 0.5460 -0.8706 30 1 -0.3633 -1.0270 -0.0375 31 1 3.1494 1.4202 -0.0374 32 1 1.6739 1.9652 -0.8706 33 1 1.7348 1.9427 0.9081 34 1 1.3103 -0.8258 -2.0101 35 1 2.9789 -0.3106 -1.6047 36 1 3.1106 -2.6934 -1.2488 37 1 1.4434 -2.7696 -0.5917 38 1 3.2736 -2.8681 2.5262 39 1 1.7145 -3.2767 1.7707 40 1 2.9077 -4.4683 -0.0472 41 1 4.4668 -4.0598 0.7084 42 1 2.8618 -5.3694 2.6287 43 1 4.1916 -7.6407 3.2076 44 1 2.6333 -8.0488 2.4502 45 1 2.4920 -9.7360 0.7662 46 1 3.5292 -11.6758 -0.3352 47 1 5.9497 -12.0725 -0.1418 48 1 7.3550 -10.5326 1.1567 49 1 8.7679 -10.3736 3.5465 50 1 1.2324 -1.1532 1.8123 51 1 2.6805 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890072799.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:01 Heat of formation + Delta-G solvation = -29.257075 kcal Electronic energy + Delta-G solvation = -27910.317725 eV Core-core repulsion = 24194.310366 eV Total energy + Delta-G solvation = -3716.007359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.97836 -39.08539 -37.31340 -35.58280 -33.59034 -33.55829 -31.67976 -30.25572 -29.41700 -28.84595 -27.69929 -26.66318 -25.14515 -24.62740 -23.17740 -20.93637 -20.87537 -20.50157 -19.36716 -19.17247 -17.12746 -16.45287 -16.32994 -15.77963 -15.44202 -15.32822 -14.98687 -14.57408 -14.35708 -14.24436 -13.88418 -13.64802 -13.44171 -13.29164 -13.23037 -12.87627 -12.75042 -12.52226 -12.27383 -11.88467 -11.82944 -11.69350 -11.51843 -11.41931 -11.34639 -11.10295 -11.01051 -10.96482 -10.93468 -10.88444 -10.76012 -10.63798 -10.36050 -9.43834 -9.32896 -9.14193 -9.09965 -8.69050 -8.64061 -7.26238 -7.24154 -6.68617 -4.29229 2.84247 3.01093 3.09799 3.13843 3.32588 3.39695 3.44486 3.98207 4.03660 4.17994 4.32663 4.50266 4.71299 4.78978 4.92692 4.95567 5.01340 5.07410 5.25059 5.26379 5.33034 5.37925 5.48214 5.53084 5.54119 5.59841 5.66679 5.79017 5.82918 5.83821 5.89542 5.93694 5.97433 6.02467 6.09600 6.22196 6.33007 6.47724 6.55672 6.60597 6.70624 6.84847 6.88069 7.13806 7.34659 7.47403 7.69153 7.92888 8.00517 8.12900 8.17955 8.36714 8.69939 8.91543 8.96951 9.06783 10.25508 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.002522 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.944164 B =11098.292368 C =12415.642084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.115 4.115 5 C 0.030 3.970 6 N -0.512 5.512 7 C 0.038 3.962 8 C 0.122 3.878 9 N -0.746 5.746 10 C 0.515 3.485 11 O -0.519 6.519 12 C -0.070 4.070 13 C -0.181 4.181 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.903 3.097 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.264 1.264 27 C 0.045 3.955 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.395 0.605 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.280 0.720 50 H 0.046 0.954 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 18.537 -1.191 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.193 4.193 4 C -0.153 4.153 5 C -0.097 4.097 6 N -0.236 5.236 7 C -0.091 4.091 8 C -0.003 4.003 9 N -0.402 5.402 10 C 0.302 3.698 11 O -0.393 6.393 12 C -0.110 4.110 13 C -0.183 4.183 14 C -0.100 4.100 15 C -0.260 4.260 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.126 3.874 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.422 5.422 23 Si 0.728 3.272 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.189 1.189 27 C -0.083 4.083 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.228 0.772 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.197 18.416 -1.901 21.637 hybrid contribution -0.458 0.280 0.814 0.975 sum -11.654 18.696 -1.087 22.058 Atomic orbital electron populations 1.21911 0.94114 1.01731 1.01884 1.21423 0.95397 0.95927 0.95102 1.21848 1.01297 0.94568 1.01577 1.22640 1.01285 0.94835 0.96573 1.23299 0.98919 0.96962 0.90540 1.64758 1.51041 1.05504 1.02299 1.22470 0.99207 0.90145 0.97282 1.21199 1.01737 0.83840 0.93509 1.46066 1.62553 1.09481 1.22051 1.21232 0.77004 0.83725 0.87819 1.90683 1.40957 1.84677 1.22968 1.20261 1.00536 0.91375 0.98811 1.19062 0.93799 0.97840 1.07608 1.20293 0.96773 0.95317 0.97588 1.20301 0.95025 1.01272 1.09375 1.20672 0.93946 0.98455 0.99504 1.21296 0.99452 0.97307 0.99805 1.17338 0.89855 0.91403 0.88757 1.19440 1.03419 0.97366 1.28333 0.90823 1.25879 0.98496 0.95504 0.94176 1.69816 1.24464 1.14857 1.33041 0.86447 0.79846 0.81257 0.79646 1.19083 1.20384 1.18858 1.23038 0.95601 0.93270 0.96409 0.92534 0.92364 0.92755 0.92061 0.92637 0.92695 0.91016 0.90480 0.89461 0.93573 0.89924 0.94205 0.91991 0.90923 0.77225 0.88572 0.90693 0.89826 0.89702 0.89608 0.86520 0.90953 0.93607 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.21 37.16 0.30 -0.59 16 2 C -0.08 -0.57 0.97 -153.15 -0.15 -0.72 16 3 C -0.14 -0.88 8.24 37.16 0.31 -0.57 16 4 C -0.12 -0.93 6.16 -24.87 -0.15 -1.08 16 5 C 0.03 0.30 5.10 -1.90 -0.01 0.29 16 6 N -0.51 -5.29 5.40 -230.46 -1.24 -6.54 16 7 C 0.04 0.39 5.14 -3.82 -0.02 0.37 16 8 C 0.12 1.66 5.33 -4.05 -0.02 1.64 16 9 N -0.75 -10.98 5.56 -60.30 -0.33 -11.32 16 10 C 0.51 10.19 7.44 -10.98 -0.08 10.11 16 11 O -0.52 -12.74 16.03 5.56 0.09 -12.65 16 12 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 13 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 14 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 15 C -0.24 -5.71 10.05 -39.29 -0.39 -6.11 16 16 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 17 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 18 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 19 C -0.46 -12.19 8.14 -37.74 -0.31 -12.50 16 20 H 0.07 1.92 6.67 -52.48 -0.35 1.57 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 22 N -0.80 -20.83 10.96 55.55 0.61 -20.23 16 23 Si 0.90 19.22 29.59 -169.99 -5.03 14.19 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 26 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 27 C 0.04 0.38 6.02 -2.76 -0.02 0.36 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 35 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 36 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 37 H 0.05 0.45 8.00 -51.93 -0.42 0.03 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.38 7.81 -51.93 -0.41 -0.03 16 40 H 0.06 0.89 6.79 -51.93 -0.35 0.54 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.39 4.47 8.47 -40.82 -0.35 4.13 16 43 H 0.10 1.87 7.08 -51.92 -0.37 1.50 16 44 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 45 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 46 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 48 H 0.12 3.26 6.20 -52.49 -0.33 2.93 16 49 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 50 H 0.05 0.37 7.11 -51.93 -0.37 0.00 16 51 H 0.08 0.67 7.69 -51.93 -0.40 0.27 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -31.31 403.18 -11.54 -42.84 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.75 Total: 8.11 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.95 Total: -20.49 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.97 Total: -38.08 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.31 -11.54 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890072799.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.585 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds