Wall clock time and date at job start Tue Mar 31 2020 16:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 110.27116 * 2 1 4 4 C 1.54600 * 110.30773 * 237.80896 * 2 1 3 5 5 C 1.54938 * 102.91848 * 263.03673 * 4 2 1 6 6 N 1.48528 * 103.22867 * 322.58781 * 5 4 2 7 7 C 1.46904 * 110.99899 * 159.72266 * 6 5 4 8 8 C 1.52998 * 109.47334 * 52.59972 * 7 6 5 9 9 N 1.46493 * 109.47257 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00044 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00303 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00150 * 180.02562 * 10 9 8 13 13 C 1.50693 * 109.47265 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12761 * 265.00113 * 13 12 10 15 15 C 1.38618 * 120.24953 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.49965 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.25148 * 0.02562 * 16 15 14 18 18 C 1.40703 * 120.13192 * 84.72543 * 13 12 10 19 19 C 1.41398 * 120.23851 * 359.97438 * 18 13 12 20 20 H 1.08004 * 119.99998 * 333.88961 * 19 18 13 21 21 C 1.39947 * 120.00082 * 153.89527 * 19 18 13 22 22 N 1.30827 * 119.99683 * 343.72043 * 21 19 18 23 23 Si 1.86798 * 120.00158 * 163.71284 * 21 19 18 24 24 H 1.48497 * 109.46823 * 60.00429 * 23 21 19 25 25 H 1.48502 * 109.46794 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47482 * 300.00194 * 23 21 19 27 27 C 1.47898 * 105.81977 * 39.20856 * 6 5 4 28 28 H 1.08999 * 109.47028 * 297.90979 * 1 2 3 29 29 H 1.09002 * 109.47403 * 57.90973 * 1 2 3 30 30 H 1.08998 * 109.46788 * 177.90797 * 1 2 3 31 31 H 1.09001 * 109.46855 * 182.08676 * 3 2 1 32 32 H 1.08996 * 109.47095 * 302.09182 * 3 2 1 33 33 H 1.08999 * 109.47072 * 62.08890 * 3 2 1 34 34 H 1.08995 * 110.72430 * 21.39942 * 4 2 1 35 35 H 1.09003 * 110.72046 * 144.50080 * 4 2 1 36 36 H 1.08999 * 110.66500 * 204.15258 * 5 4 2 37 37 H 1.09001 * 110.66510 * 81.02407 * 5 4 2 38 38 H 1.08998 * 109.46836 * 172.60541 * 7 6 5 39 39 H 1.09006 * 109.46620 * 292.60288 * 7 6 5 40 40 H 1.08999 * 109.47206 * 300.00418 * 8 7 6 41 41 H 1.09007 * 109.46600 * 60.00206 * 8 7 6 42 42 H 0.97005 * 119.99727 * 0.02562 * 9 8 7 43 43 H 1.09009 * 109.47038 * 299.99998 * 12 10 9 44 44 H 1.09000 * 109.46930 * 59.99648 * 12 10 9 45 45 H 1.07997 * 119.87533 * 359.97438 * 14 13 12 46 46 H 1.07997 * 119.74890 * 179.97438 * 15 14 13 47 47 H 1.07998 * 119.87498 * 179.97438 * 16 15 14 48 48 H 1.07998 * 120.12961 * 179.97438 * 17 16 15 49 49 H 0.96999 * 119.99734 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.91815 * 94.02244 * 27 6 5 51 51 H 1.09004 * 109.91248 * 215.11750 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0666 -0.7724 -1.2270 5 6 2.3585 -2.1802 -0.6496 6 7 2.8810 -1.8884 0.7098 7 6 2.7670 -3.0653 1.5815 8 6 3.4143 -4.2712 0.8976 9 7 3.3001 -5.4450 1.7666 10 6 3.8040 -6.6299 1.3684 11 8 4.3524 -6.7243 0.2908 12 6 3.6860 -7.8375 2.2621 13 6 4.3248 -9.0249 1.5891 14 6 3.5555 -9.9007 0.8573 15 6 4.1405 -10.9935 0.2367 16 6 5.5045 -11.2177 0.3455 17 6 6.2929 -10.3558 1.0729 18 6 5.7108 -9.2393 1.7015 19 6 6.5121 -8.3427 2.4455 20 1 6.2002 -7.3163 2.5707 21 6 7.7093 -8.7853 3.0194 22 7 7.9379 -10.0669 3.1490 23 14 8.9808 -7.5461 3.6000 24 1 8.3828 -6.6757 4.6440 25 1 10.1507 -8.2653 4.1650 26 1 9.4198 -6.7125 2.4523 27 6 2.0645 -0.7673 1.2235 28 1 -0.3633 0.4810 0.9081 29 1 -0.3634 0.5460 -0.8706 30 1 -0.3633 -1.0270 -0.0375 31 1 3.1494 1.4202 -0.0374 32 1 1.6739 1.9652 -0.8706 33 1 1.7348 1.9427 0.9081 34 1 1.3103 -0.8258 -2.0101 35 1 2.9789 -0.3106 -1.6047 36 1 3.1106 -2.6934 -1.2488 37 1 1.4434 -2.7696 -0.5917 38 1 3.2736 -2.8681 2.5262 39 1 1.7145 -3.2767 1.7707 40 1 2.9077 -4.4683 -0.0472 41 1 4.4668 -4.0598 0.7084 42 1 2.8618 -5.3694 2.6287 43 1 4.1916 -7.6407 3.2076 44 1 2.6333 -8.0488 2.4502 45 1 2.4920 -9.7360 0.7662 46 1 3.5292 -11.6758 -0.3352 47 1 5.9497 -12.0725 -0.1418 48 1 7.3550 -10.5326 1.1567 49 1 8.7679 -10.3736 3.5465 50 1 1.2324 -1.1532 1.8123 51 1 2.6805 -0.1102 1.8375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890072799.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:00 Heat of formation + Delta-G solvation = -48.360835 kcal Electronic energy + Delta-G solvation = -27911.146126 eV Core-core repulsion = 24194.310366 eV Total energy + Delta-G solvation = -3716.835760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93653 -40.42636 -39.11010 -36.63568 -35.49316 -34.68108 -33.41595 -31.35403 -31.03089 -29.95245 -28.24642 -28.15752 -26.86300 -25.58921 -24.10821 -22.81964 -22.14662 -21.78660 -20.87942 -19.92319 -19.05955 -17.84668 -17.46479 -17.11747 -16.84896 -16.38595 -16.29745 -15.98892 -15.69500 -15.34314 -15.13286 -14.80900 -14.65703 -14.36526 -14.33905 -14.19944 -13.85653 -13.70025 -13.51372 -13.36057 -12.95760 -12.91049 -12.75412 -12.69498 -12.55537 -12.47740 -12.39031 -12.21636 -12.17199 -12.11219 -11.62286 -11.50762 -11.38068 -11.31778 -11.20770 -11.02327 -10.78532 -10.03781 -9.42588 -9.22088 -9.15688 -8.58917 -6.28775 1.00225 1.14019 1.35684 1.45861 1.54590 1.83900 2.20083 2.24582 2.78981 3.13888 3.51298 3.67303 3.77558 3.88704 3.93097 4.05069 4.16337 4.30236 4.35202 4.40746 4.41456 4.45700 4.50570 4.60185 4.63037 4.71688 4.77776 4.81282 4.81923 4.83335 4.87991 4.92027 4.94638 5.07333 5.08321 5.09701 5.15680 5.20626 5.30947 5.34049 5.37425 5.47121 5.50804 5.55733 5.78337 5.88106 6.01056 6.04409 6.17544 6.21937 6.42732 6.66353 6.75841 6.99914 7.12053 7.44905 8.37369 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.002522 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.944164 B =11098.292368 C =12415.642084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.113 4.113 5 C 0.029 3.971 6 N -0.528 5.528 7 C 0.049 3.951 8 C 0.126 3.874 9 N -0.723 5.723 10 C 0.516 3.484 11 O -0.575 6.575 12 C -0.068 4.068 13 C -0.189 4.189 14 C -0.091 4.091 15 C -0.244 4.244 16 C -0.117 4.117 17 C -0.195 4.195 18 C 0.095 3.905 19 C -0.482 4.482 20 H 0.071 0.929 21 C 0.036 3.964 22 N -0.826 5.826 23 Si 0.970 3.030 24 H -0.252 1.252 25 H -0.266 1.266 26 H -0.272 1.272 27 C 0.044 3.956 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.415 0.585 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.286 0.714 50 H 0.053 0.947 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 20.305 -0.259 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 C -0.190 4.190 4 C -0.151 4.151 5 C -0.099 4.099 6 N -0.253 5.253 7 C -0.079 4.079 8 C 0.002 3.998 9 N -0.378 5.378 10 C 0.304 3.696 11 O -0.454 6.454 12 C -0.108 4.108 13 C -0.191 4.191 14 C -0.109 4.109 15 C -0.263 4.263 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.092 3.908 19 C -0.512 4.512 20 H 0.089 0.911 21 C -0.179 4.179 22 N -0.452 5.452 23 Si 0.792 3.208 24 H -0.176 1.176 25 H -0.191 1.191 26 H -0.198 1.198 27 C -0.083 4.083 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.252 0.748 43 H 0.116 0.884 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.115 0.885 49 H 0.096 0.904 50 H 0.072 0.928 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.304 20.209 -0.923 24.213 hybrid contribution 0.092 -0.300 0.465 0.561 sum -13.212 19.909 -0.458 23.898 Atomic orbital electron populations 1.21882 0.93130 1.01647 1.02641 1.21431 0.96117 0.96068 0.94010 1.21821 1.00696 0.94144 1.02360 1.22634 1.01454 0.93776 0.97219 1.23273 0.98318 0.97944 0.90365 1.64741 1.52116 1.05883 1.02556 1.22345 0.99805 0.88748 0.97018 1.21179 1.00449 0.84590 0.93586 1.45791 1.60860 1.08348 1.22808 1.21176 0.76531 0.84949 0.86914 1.90667 1.43726 1.85663 1.25303 1.20277 1.02479 0.89877 0.98127 1.19571 0.93178 0.99258 1.07069 1.20744 0.98528 0.94845 0.96824 1.20729 0.94782 1.01771 1.08984 1.20949 0.94751 0.98693 0.99189 1.21311 0.98982 0.99070 1.02055 1.17751 0.91578 0.91886 0.89538 1.19586 1.04857 0.97229 1.29513 0.91125 1.26665 0.99931 0.97251 0.94011 1.69877 1.25220 1.16461 1.33691 0.85430 0.77528 0.78822 0.79046 1.17613 1.19054 1.19754 1.23094 0.95608 0.92656 0.96959 0.91784 0.91648 0.93233 0.92970 0.91911 0.91876 0.89972 0.91019 0.91239 0.93432 0.89133 0.92472 0.92732 0.93571 0.74826 0.88377 0.86730 0.86473 0.86653 0.87691 0.88543 0.90363 0.92832 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.21 71.98 0.59 -0.82 16 2 C -0.08 -0.96 0.97 -51.30 -0.05 -1.01 16 3 C -0.13 -1.47 8.24 71.98 0.59 -0.88 16 4 C -0.11 -1.68 6.16 31.80 0.20 -1.49 16 5 C 0.03 0.54 5.10 86.65 0.44 0.98 16 6 N -0.53 -10.30 5.40 -883.04 -4.76 -15.06 16 7 C 0.05 0.94 5.14 86.30 0.44 1.38 16 8 C 0.13 3.38 5.33 86.38 0.46 3.84 16 9 N -0.72 -20.25 5.56 -463.07 -2.57 -22.82 16 10 C 0.52 20.14 7.44 87.66 0.65 20.79 16 11 O -0.58 -28.73 16.03 -3.02 -0.05 -28.78 16 12 C -0.07 -2.61 5.18 29.10 0.15 -2.46 16 13 C -0.19 -9.23 4.43 -19.41 -0.09 -9.32 16 14 C -0.09 -4.17 9.66 22.22 0.21 -3.96 16 15 C -0.24 -11.29 10.05 22.46 0.23 -11.06 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.19 -11.01 8.69 22.73 0.20 -10.81 16 18 C 0.09 5.30 5.56 -21.29 -0.12 5.18 16 19 C -0.48 -26.53 8.14 23.46 0.19 -26.34 16 20 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 21 C 0.04 1.87 5.16 85.26 0.44 2.31 16 22 N -0.83 -44.54 10.96 21.83 0.24 -44.30 16 23 Si 0.97 39.94 29.59 68.60 2.03 41.97 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 25 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 C 0.04 0.66 6.02 86.44 0.52 1.18 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.67 8.11 -2.39 -0.02 0.65 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 1.04 7.85 -2.39 -0.02 1.02 16 35 H 0.07 1.14 7.85 -2.39 -0.02 1.12 16 36 H 0.07 1.53 7.66 -2.39 -0.02 1.52 16 37 H 0.05 0.87 8.00 -2.39 -0.02 0.85 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 0.91 7.81 -2.38 -0.02 0.90 16 40 H 0.05 1.57 6.79 -2.39 -0.02 1.55 16 41 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.41 8.29 8.47 -92.70 -0.79 7.50 16 43 H 0.10 3.72 7.08 -2.38 -0.02 3.71 16 44 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16 45 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 46 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 47 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 48 H 0.10 5.70 6.20 -2.91 -0.02 5.68 16 49 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 50 H 0.05 0.72 7.11 -2.39 -0.02 0.71 16 51 H 0.08 1.21 7.69 -2.38 -0.02 1.19 16 Total: -1.00 -70.47 403.18 0.29 -70.18 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.12 Total: 36.96 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 5.29 Total: -38.14 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -7.10 Total: -82.18 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -70.47 0.29 -70.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890072799.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.814 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds