Wall clock time and date at job start Tue Mar 31 2020 16:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.38238 * 119.99853 * 269.73049 * 3 2 1 5 5 C 1.38244 * 119.99427 * 179.74316 * 4 3 2 6 6 C 1.38229 * 120.00260 * 0.55159 * 5 4 3 7 7 C 1.50698 * 120.00085 * 179.72678 * 6 5 4 8 8 N 1.46899 * 109.47027 * 269.97562 * 7 6 5 9 9 C 1.46908 * 110.99865 * 294.30022 * 8 7 6 10 10 C 1.53236 * 109.33925 * 172.74442 * 9 8 7 11 11 N 1.47082 * 108.52118 * 53.83064 * 10 9 8 12 12 C 1.34778 * 120.88523 * 128.78770 * 11 10 9 13 13 O 1.21277 * 120.00422 * 175.17005 * 12 11 10 14 14 C 1.50700 * 119.99593 * 355.17652 * 12 11 10 15 15 H 1.09000 * 109.47525 * 324.20656 * 14 12 11 16 16 C 1.53005 * 109.47430 * 84.20261 * 14 12 11 17 17 C 1.50703 * 109.47345 * 204.20221 * 14 12 11 18 18 H 1.08004 * 119.99245 * 0.02562 * 17 14 12 19 19 C 1.37867 * 120.00230 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00461 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 119.99907 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.46867 * 90.00292 * 21 19 17 23 23 H 1.48505 * 109.46897 * 209.99924 * 21 19 17 24 24 H 1.48495 * 109.47264 * 329.99982 * 21 19 17 25 25 C 1.47082 * 118.23690 * 308.81712 * 11 10 9 26 26 C 1.46894 * 111.00264 * 170.00062 * 8 7 6 27 27 C 1.38239 * 119.99964 * 359.69769 * 6 5 4 28 28 C 1.38232 * 120.00106 * 0.02729 * 27 6 5 29 29 H 1.08997 * 109.47261 * 60.00039 * 1 2 3 30 30 H 1.09001 * 109.46862 * 299.99673 * 1 2 3 31 31 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47658 * 120.00326 * 2 1 3 33 33 H 1.08998 * 109.47101 * 239.99868 * 2 1 3 34 34 H 1.07990 * 119.99976 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.99500 * 180.27108 * 5 4 3 36 36 H 1.08997 * 109.47021 * 29.97546 * 7 6 5 37 37 H 1.08997 * 109.47266 * 149.97535 * 7 6 5 38 38 H 1.08999 * 109.49218 * 292.70572 * 9 8 7 39 39 H 1.09000 * 109.48807 * 52.78616 * 9 8 7 40 40 H 1.08998 * 109.63001 * 294.12346 * 10 9 8 41 41 H 1.08998 * 109.62788 * 173.53928 * 10 9 8 42 42 H 1.08997 * 109.47119 * 306.14119 * 16 14 12 43 43 H 1.09006 * 109.46538 * 66.13131 * 16 14 12 44 44 H 1.08991 * 109.47296 * 186.13239 * 16 14 12 45 45 H 0.97000 * 120.00663 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.62507 * 291.47134 * 25 11 10 47 47 H 1.09003 * 109.62893 * 170.89353 * 25 11 10 48 48 H 1.09001 * 109.49223 * 307.21503 * 26 8 7 49 49 H 1.09002 * 109.49574 * 67.28949 * 26 8 7 50 50 H 1.07998 * 119.99747 * 179.97438 * 27 6 5 51 51 H 1.08001 * 120.00115 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7238 3.3757 -1.1971 6 6 2.9547 4.0271 0.0000 7 6 3.4574 5.4478 0.0000 8 7 4.9264 5.4474 0.0002 9 6 5.4525 4.8829 1.2503 10 6 6.9734 4.7326 1.1387 11 7 7.5444 6.0324 0.7545 12 6 8.5628 6.5740 1.4517 13 8 9.0794 7.6028 1.0704 14 6 9.0596 5.9009 2.7052 15 1 8.2185 5.4548 3.2359 16 6 10.0651 4.8091 2.3337 17 6 9.7290 6.9199 3.5910 18 1 9.7883 7.9518 3.2777 19 6 10.2647 6.5351 4.8017 20 7 10.1920 5.2787 5.1834 21 14 11.0939 7.7984 5.9000 22 1 10.0882 8.3939 6.8161 23 1 12.1596 7.1385 6.6963 24 1 11.6929 8.8669 5.0606 25 6 6.9742 6.7260 -0.4105 26 6 5.4533 6.7977 -0.2379 27 6 2.7239 3.3756 1.1972 28 6 2.2628 2.0725 1.1972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0926 1.5599 -2.1324 35 1 2.9038 3.8848 -2.1325 36 1 3.0943 5.9617 -0.8900 37 1 3.0941 5.9618 0.8899 38 1 5.2127 5.5487 2.0793 39 1 5.0024 3.9058 1.4259 40 1 7.2131 3.9885 0.3790 41 1 7.3823 4.4229 2.1004 42 1 9.6148 4.1325 1.6075 43 1 10.9548 5.2667 1.9010 44 1 10.3419 4.2507 3.2278 45 1 10.5686 5.0080 6.0354 46 1 7.2140 6.1735 -1.3190 47 1 7.3836 7.7343 -0.4729 48 1 5.0037 7.2095 -1.1415 49 1 5.2134 7.4369 0.6119 50 1 2.9047 3.8845 2.1324 51 1 2.0828 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893422347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:57 Heat of formation + Delta-G solvation = -13.249839 kcal Electronic energy + Delta-G solvation = -28432.985149 eV Core-core repulsion = 24717.671916 eV Total energy + Delta-G solvation = -3715.313233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.06182 -39.31461 -37.56076 -35.02431 -33.84389 -33.55701 -31.38484 -31.04124 -30.28626 -30.05740 -27.45377 -25.16787 -24.95417 -23.72845 -23.05989 -22.77689 -22.09562 -20.61974 -20.34172 -18.33779 -16.58608 -16.39443 -16.05946 -15.86911 -15.51876 -15.33472 -14.88862 -14.84941 -14.52451 -14.27949 -14.23454 -13.92177 -13.80648 -13.49822 -13.08214 -13.02855 -12.77143 -12.56241 -12.27215 -11.99193 -11.92936 -11.86982 -11.45810 -11.37726 -11.18280 -11.15888 -11.03036 -10.97364 -10.94551 -10.73122 -10.65093 -10.63018 -10.22633 -9.99291 -9.02128 -8.96355 -8.74002 -8.56937 -8.44525 -8.28312 -7.94933 -6.03416 -4.05956 1.16618 1.29519 3.32911 3.38811 3.44888 3.47195 3.68279 3.73067 4.09458 4.46676 4.49349 4.58660 4.70569 4.84304 4.88093 5.02119 5.06662 5.13872 5.16778 5.25200 5.29673 5.31476 5.34347 5.42547 5.47809 5.53299 5.58939 5.61135 5.68027 5.70383 5.83480 5.84359 5.93654 5.94778 5.95940 6.09509 6.23229 6.28869 6.29598 6.47292 6.50359 6.68328 6.85910 6.86589 6.95256 6.99890 7.02363 7.14538 7.47614 7.77220 7.98887 8.11613 8.40150 8.99780 9.24212 9.58748 11.04501 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.002565 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.366974 B =10912.813767 C =11873.779664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.120 4.120 5 C -0.095 4.095 6 C -0.078 4.078 7 C 0.093 3.907 8 N -0.531 5.531 9 C 0.037 3.963 10 C 0.116 3.884 11 N -0.629 5.629 12 C 0.524 3.476 13 O -0.549 6.549 14 C 0.032 3.968 15 H 0.047 0.953 16 C -0.128 4.128 17 C -0.499 4.499 18 H 0.069 0.931 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.117 3.883 26 C 0.044 3.956 27 C -0.110 4.110 28 C -0.118 4.118 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.012 0.988 43 H 0.035 0.965 44 H 0.090 0.910 45 H 0.261 0.739 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.038 0.962 50 H 0.120 0.880 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.157 -9.408 -11.495 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.114 4.114 6 C -0.079 4.079 7 C -0.034 4.034 8 N -0.256 5.256 9 C -0.092 4.092 10 C -0.008 4.008 11 N -0.365 5.365 12 C 0.316 3.684 13 O -0.425 6.425 14 C 0.011 3.989 15 H 0.065 0.935 16 C -0.186 4.186 17 C -0.538 4.538 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.007 4.007 26 C -0.085 4.085 27 C -0.129 4.129 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.057 0.943 50 H 0.138 0.862 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.623 -9.225 -11.919 24.743 hybrid contribution 0.085 1.050 1.275 1.654 sum -19.538 -8.175 -10.644 23.703 Atomic orbital electron populations 1.21744 0.94838 1.01596 1.02164 1.20542 0.96067 0.92840 1.02855 1.19879 0.99226 0.96122 0.93264 1.20990 1.00486 0.94936 0.97385 1.20970 0.98301 0.94515 0.97590 1.19708 0.99038 0.95921 0.93221 1.21028 0.87985 0.92913 1.01488 1.61986 1.05954 1.22031 1.35614 1.22631 0.96128 1.00449 0.89969 1.21787 0.91373 0.85381 1.02224 1.48419 1.36169 1.21360 1.30540 1.22029 0.77048 0.84241 0.85130 1.90516 1.56854 1.25104 1.69995 1.18877 0.96229 0.95350 0.88449 0.93550 1.21700 0.98425 0.97641 1.00853 1.21076 1.36228 0.95003 1.01473 0.91303 1.24931 0.96046 0.95483 0.97674 1.69879 1.46356 1.15470 1.21780 0.86470 0.79135 0.81461 0.80269 1.20727 1.21211 1.19732 1.21480 0.91022 0.99033 0.89126 1.22501 0.96160 0.88913 1.00903 1.21084 0.99191 0.94947 0.97629 1.20982 1.00227 0.94851 0.97517 0.92628 0.92582 0.92494 0.91038 0.91116 0.86359 0.86092 0.90017 0.94008 0.94207 0.89482 0.91581 0.88064 0.96899 0.94578 0.89163 0.92953 0.91817 0.89162 0.90085 0.94348 0.86204 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.54 16 2 C -0.09 -0.60 6.07 -27.88 -0.17 -0.77 16 3 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 5 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 6 C -0.08 -0.81 4.89 -104.63 -0.51 -1.32 16 7 C 0.09 0.97 5.12 -4.98 -0.03 0.94 16 8 N -0.53 -6.62 4.62 -235.77 -1.09 -7.71 16 9 C 0.04 0.50 5.34 -3.70 -0.02 0.48 16 10 C 0.12 1.86 5.92 -3.60 -0.02 1.84 16 11 N -0.63 -11.81 3.01 -172.46 -0.52 -12.33 16 12 C 0.52 12.39 6.81 -10.98 -0.07 12.31 16 13 O -0.55 -14.69 15.27 5.56 0.08 -14.61 16 14 C 0.03 0.81 1.78 -92.92 -0.17 0.64 16 15 H 0.05 1.18 6.50 -51.93 -0.34 0.84 16 16 C -0.13 -3.06 8.65 37.16 0.32 -2.74 16 17 C -0.50 -14.29 8.33 -34.44 -0.29 -14.58 16 18 H 0.07 2.08 7.01 -52.48 -0.37 1.71 16 19 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 20 N -0.90 -25.12 11.39 55.43 0.63 -24.49 16 21 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.12 1.85 6.58 -3.60 -0.02 1.82 16 26 C 0.04 0.56 5.62 -3.71 -0.02 0.54 16 27 C -0.11 -1.12 7.86 -39.58 -0.31 -1.43 16 28 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.09 5.66 -51.93 -0.29 0.80 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.75 5.27 -51.93 -0.27 1.48 16 42 H 0.01 0.25 7.41 -51.93 -0.38 -0.13 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 2.30 6.26 -51.93 -0.33 1.98 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.55 7.10 -51.93 -0.37 1.18 16 48 H 0.08 0.85 7.99 -51.93 -0.41 0.43 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.12 1.15 7.93 -52.49 -0.42 0.74 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -31.61 398.43 -11.27 -42.88 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.64 Total: 0.19 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.72 Total: -6.83 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.98 Total: -44.52 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.08 Total: -14.61 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.61 -11.27 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893422347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.634 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds