Wall clock time and date at job start Tue Mar 31 2020 16:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.38238 * 119.99853 * 269.73049 * 3 2 1 5 5 C 1.38244 * 119.99427 * 179.74316 * 4 3 2 6 6 C 1.38229 * 120.00260 * 0.55159 * 5 4 3 7 7 C 1.50698 * 120.00085 * 179.72678 * 6 5 4 8 8 N 1.46899 * 109.47027 * 269.97562 * 7 6 5 9 9 C 1.46908 * 110.99865 * 294.30022 * 8 7 6 10 10 C 1.53236 * 109.33925 * 172.74442 * 9 8 7 11 11 N 1.47082 * 108.52118 * 53.83064 * 10 9 8 12 12 C 1.34778 * 120.88523 * 128.78770 * 11 10 9 13 13 O 1.21277 * 120.00422 * 175.17005 * 12 11 10 14 14 C 1.50700 * 119.99593 * 355.17652 * 12 11 10 15 15 H 1.09000 * 109.47525 * 324.20656 * 14 12 11 16 16 C 1.53005 * 109.47430 * 84.20261 * 14 12 11 17 17 C 1.50703 * 109.47345 * 204.20221 * 14 12 11 18 18 H 1.08004 * 119.99245 * 0.02562 * 17 14 12 19 19 C 1.37867 * 120.00230 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00461 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 119.99907 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.46867 * 90.00292 * 21 19 17 23 23 H 1.48505 * 109.46897 * 209.99924 * 21 19 17 24 24 H 1.48495 * 109.47264 * 329.99982 * 21 19 17 25 25 C 1.47082 * 118.23690 * 308.81712 * 11 10 9 26 26 C 1.46894 * 111.00264 * 170.00062 * 8 7 6 27 27 C 1.38239 * 119.99964 * 359.69769 * 6 5 4 28 28 C 1.38232 * 120.00106 * 0.02729 * 27 6 5 29 29 H 1.08997 * 109.47261 * 60.00039 * 1 2 3 30 30 H 1.09001 * 109.46862 * 299.99673 * 1 2 3 31 31 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47658 * 120.00326 * 2 1 3 33 33 H 1.08998 * 109.47101 * 239.99868 * 2 1 3 34 34 H 1.07990 * 119.99976 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.99500 * 180.27108 * 5 4 3 36 36 H 1.08997 * 109.47021 * 29.97546 * 7 6 5 37 37 H 1.08997 * 109.47266 * 149.97535 * 7 6 5 38 38 H 1.08999 * 109.49218 * 292.70572 * 9 8 7 39 39 H 1.09000 * 109.48807 * 52.78616 * 9 8 7 40 40 H 1.08998 * 109.63001 * 294.12346 * 10 9 8 41 41 H 1.08998 * 109.62788 * 173.53928 * 10 9 8 42 42 H 1.08997 * 109.47119 * 306.14119 * 16 14 12 43 43 H 1.09006 * 109.46538 * 66.13131 * 16 14 12 44 44 H 1.08991 * 109.47296 * 186.13239 * 16 14 12 45 45 H 0.97000 * 120.00663 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.62507 * 291.47134 * 25 11 10 47 47 H 1.09003 * 109.62893 * 170.89353 * 25 11 10 48 48 H 1.09001 * 109.49223 * 307.21503 * 26 8 7 49 49 H 1.09002 * 109.49574 * 67.28949 * 26 8 7 50 50 H 1.07998 * 119.99747 * 179.97438 * 27 6 5 51 51 H 1.08001 * 120.00115 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7238 3.3757 -1.1971 6 6 2.9547 4.0271 0.0000 7 6 3.4574 5.4478 0.0000 8 7 4.9264 5.4474 0.0002 9 6 5.4525 4.8829 1.2503 10 6 6.9734 4.7326 1.1387 11 7 7.5444 6.0324 0.7545 12 6 8.5628 6.5740 1.4517 13 8 9.0794 7.6028 1.0704 14 6 9.0596 5.9009 2.7052 15 1 8.2185 5.4548 3.2359 16 6 10.0651 4.8091 2.3337 17 6 9.7290 6.9199 3.5910 18 1 9.7883 7.9518 3.2777 19 6 10.2647 6.5351 4.8017 20 7 10.1920 5.2787 5.1834 21 14 11.0939 7.7984 5.9000 22 1 10.0882 8.3939 6.8161 23 1 12.1596 7.1385 6.6963 24 1 11.6929 8.8669 5.0606 25 6 6.9742 6.7260 -0.4105 26 6 5.4533 6.7977 -0.2379 27 6 2.7239 3.3756 1.1972 28 6 2.2628 2.0725 1.1972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0926 1.5599 -2.1324 35 1 2.9038 3.8848 -2.1325 36 1 3.0943 5.9617 -0.8900 37 1 3.0941 5.9618 0.8899 38 1 5.2127 5.5487 2.0793 39 1 5.0024 3.9058 1.4259 40 1 7.2131 3.9885 0.3790 41 1 7.3823 4.4229 2.1004 42 1 9.6148 4.1325 1.6075 43 1 10.9548 5.2667 1.9010 44 1 10.3419 4.2507 3.2278 45 1 10.5686 5.0080 6.0354 46 1 7.2140 6.1735 -1.3190 47 1 7.3836 7.7343 -0.4729 48 1 5.0037 7.2095 -1.1415 49 1 5.2134 7.4369 0.6119 50 1 2.9047 3.8845 2.1324 51 1 2.0828 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893422347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:55 Heat of formation + Delta-G solvation = -30.443723 kcal Electronic energy + Delta-G solvation = -28433.730732 eV Core-core repulsion = 24717.671916 eV Total energy + Delta-G solvation = -3716.058816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.25684 -40.43380 -38.87788 -36.10714 -35.85597 -34.60208 -32.89315 -31.92643 -31.60886 -31.12046 -28.52706 -27.28221 -25.96757 -24.96877 -24.31313 -23.49155 -23.25404 -21.77680 -21.29961 -19.88818 -18.47882 -17.87891 -17.14084 -17.03333 -16.61053 -16.40728 -16.27317 -16.09372 -15.88083 -15.68319 -15.26666 -14.83023 -14.63867 -14.52659 -14.43516 -14.26764 -14.05365 -13.72485 -13.51821 -13.30248 -12.99109 -12.85963 -12.77464 -12.72518 -12.69002 -12.57068 -12.36557 -12.20147 -12.18335 -12.12179 -12.03260 -11.97529 -11.60216 -11.55080 -11.06054 -10.61830 -10.26231 -9.78846 -9.68446 -9.46976 -9.20835 -8.17566 -6.27616 0.44563 0.58380 1.38422 1.39768 1.51479 1.87291 2.13149 2.43968 2.70150 3.11706 3.16227 3.77891 3.80053 3.92839 3.96818 4.00484 4.11585 4.20218 4.21950 4.27158 4.33499 4.38609 4.52909 4.54992 4.57486 4.64015 4.68167 4.71810 4.75054 4.78703 4.80257 4.84448 4.85250 4.92525 4.99939 5.06352 5.10508 5.12537 5.21483 5.28443 5.41366 5.42283 5.57602 5.62297 5.71277 5.75554 5.80345 5.89014 5.98276 5.99062 6.16717 6.19930 6.56248 6.78089 7.36222 7.46583 8.88803 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.002565 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.366974 B =10912.813767 C =11873.779664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.126 4.126 5 C -0.101 4.101 6 C -0.091 4.091 7 C 0.097 3.903 8 N -0.530 5.530 9 C 0.047 3.953 10 C 0.113 3.887 11 N -0.621 5.621 12 C 0.521 3.479 13 O -0.590 6.590 14 C 0.030 3.970 15 H 0.042 0.958 16 C -0.114 4.114 17 C -0.529 4.529 18 H 0.042 0.958 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.955 3.045 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.281 1.281 25 C 0.113 3.887 26 C 0.052 3.948 27 C -0.122 4.122 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.025 0.975 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.018 0.982 44 H 0.073 0.927 45 H 0.266 0.734 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.024 0.976 50 H 0.119 0.881 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.734 -10.588 -12.463 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.144 4.144 5 C -0.119 4.119 6 C -0.091 4.091 7 C -0.030 4.030 8 N -0.254 5.254 9 C -0.082 4.082 10 C -0.010 4.010 11 N -0.355 5.355 12 C 0.312 3.688 13 O -0.471 6.471 14 C 0.009 3.991 15 H 0.060 0.940 16 C -0.172 4.172 17 C -0.567 4.567 18 H 0.060 0.940 19 C -0.178 4.178 20 N -0.547 5.547 21 Si 0.781 3.219 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.076 4.076 27 C -0.140 4.140 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.133 0.867 49 H 0.043 0.957 50 H 0.137 0.863 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.252 -10.448 -12.900 26.968 hybrid contribution 0.494 1.334 1.532 2.091 sum -20.758 -9.115 -11.368 25.361 Atomic orbital electron populations 1.21723 0.94210 1.02299 1.01861 1.20585 0.96548 0.91723 1.03421 1.20160 0.98603 0.97034 0.93111 1.21253 1.00083 0.94924 0.98169 1.21169 0.98087 0.94863 0.97815 1.19743 0.99876 0.95922 0.93567 1.21061 0.86229 0.93392 1.02314 1.61991 1.07486 1.21460 1.34478 1.22481 0.94323 1.01079 0.90279 1.21940 0.92923 0.84211 1.01909 1.48369 1.34584 1.22048 1.30485 1.21669 0.78133 0.83791 0.85162 1.90485 1.58752 1.26786 1.71036 1.18783 0.96123 0.95056 0.89117 0.94012 1.21505 0.97588 0.97405 1.00693 1.21197 1.37905 0.94636 1.03000 0.93958 1.25579 0.96290 0.97346 0.98563 1.69946 1.46257 1.16374 1.22170 0.85602 0.78581 0.79176 0.78578 1.19725 1.19799 1.20589 1.21696 0.92887 0.98022 0.88330 1.22438 0.94026 0.89160 1.01973 1.21191 0.99703 0.95399 0.97741 1.21184 1.00311 0.94829 0.98333 0.92714 0.93096 0.91316 0.90740 0.90309 0.84690 0.84925 0.88139 0.94200 0.95635 0.88052 0.89901 0.89585 0.93772 0.96278 0.90790 0.92475 0.90052 0.90877 0.86715 0.95740 0.86308 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.09 -1.03 6.07 29.85 0.18 -0.85 16 3 C -0.09 -1.44 5.13 -19.86 -0.10 -1.54 16 4 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 5 C -0.10 -1.72 9.70 22.27 0.22 -1.50 16 6 C -0.09 -1.70 4.89 -19.87 -0.10 -1.79 16 7 C 0.10 1.78 5.12 85.56 0.44 2.22 16 8 N -0.53 -12.03 4.62 -899.84 -4.16 -16.19 16 9 C 0.05 1.23 5.34 86.38 0.46 1.69 16 10 C 0.11 3.51 5.92 86.35 0.51 4.02 16 11 N -0.62 -23.20 3.01 -817.94 -2.46 -25.66 16 12 C 0.52 25.24 6.81 87.66 0.60 25.84 16 13 O -0.59 -32.76 15.27 -3.02 -0.05 -32.81 16 14 C 0.03 1.57 1.78 -12.28 -0.02 1.55 16 15 H 0.04 2.19 6.50 -2.39 -0.02 2.17 16 16 C -0.11 -5.51 8.65 71.98 0.62 -4.88 16 17 C -0.53 -31.23 8.33 25.60 0.21 -31.01 16 18 H 0.04 2.67 7.01 -2.91 -0.02 2.65 16 19 C 0.02 1.23 5.30 84.65 0.45 1.68 16 20 N -0.91 -51.18 11.39 21.44 0.24 -50.93 16 21 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.11 3.46 6.58 86.35 0.57 4.03 16 26 C 0.05 1.25 5.62 86.38 0.49 1.74 16 27 C -0.12 -2.32 7.86 22.27 0.18 -2.14 16 28 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 33 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 34 H 0.14 1.62 8.06 -2.92 -0.02 1.60 16 35 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.10 1.49 7.91 -2.39 -0.02 1.48 16 37 H 0.04 0.77 8.07 -2.39 -0.02 0.75 16 38 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 2.39 5.66 -2.39 -0.01 2.38 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.09 2.96 5.27 -2.39 -0.01 2.95 16 42 H 0.04 1.80 7.41 -2.39 -0.02 1.78 16 43 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.07 3.81 6.26 -2.39 -0.01 3.80 16 45 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.07 2.52 7.10 -2.39 -0.02 2.50 16 48 H 0.11 2.02 7.99 -2.39 -0.02 2.00 16 49 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.12 2.20 7.93 -2.91 -0.02 2.18 16 51 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -68.95 398.43 2.34 -66.61 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.89 Total: 17.27 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.84 Total: -5.59 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -6.38 Total: -92.78 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.81 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.95 2.34 -66.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893422347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.166 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds