Wall clock time and date at job start Tue Mar 31 2020 16:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.44670 * 2 1 4 4 C 1.53044 * 109.46253 * 240.03329 * 2 1 3 5 5 C 1.53193 * 109.30977 * 301.34290 * 4 2 1 6 6 N 1.46930 * 108.77531 * 305.36373 * 5 4 2 7 7 C 1.34779 * 120.63054 * 233.61407 * 6 5 4 8 8 O 1.21579 * 119.99920 * 184.97049 * 7 6 5 9 9 N 1.34779 * 119.99737 * 4.96400 * 7 6 5 10 10 C 1.46498 * 119.99766 * 174.78205 * 9 7 6 11 11 C 1.52998 * 109.47041 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47305 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99713 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00506 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99785 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00411 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46671 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47432 * 119.99487 * 16 14 12 19 19 H 1.48497 * 109.46711 * 239.99715 * 16 14 12 20 20 C 1.46933 * 118.76476 * 53.58901 * 6 5 4 21 21 C 1.53037 * 109.46273 * 119.96097 * 2 1 3 22 22 H 1.09006 * 109.49976 * 178.63857 * 21 2 1 23 23 C 1.50697 * 109.49896 * 298.70873 * 21 2 1 24 24 C 1.38233 * 120.00393 * 74.63088 * 23 21 2 25 25 C 1.38232 * 120.00177 * 180.25392 * 24 23 21 26 26 C 1.38229 * 120.00209 * 359.53454 * 25 24 23 27 27 C 1.38237 * 119.99910 * 0.42520 * 26 25 24 28 28 C 1.38239 * 120.00014 * 359.80475 * 27 26 25 29 29 H 1.08994 * 109.47072 * 306.48832 * 1 2 3 30 30 H 1.08996 * 109.46996 * 66.49557 * 1 2 3 31 31 H 1.08999 * 109.46372 * 186.49453 * 1 2 3 32 32 H 1.09007 * 109.47013 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46733 * 299.96495 * 3 2 1 34 34 H 1.08990 * 109.47555 * 59.96423 * 3 2 1 35 35 H 1.09003 * 109.49581 * 61.29236 * 4 2 1 36 36 H 1.09000 * 109.49847 * 181.38975 * 4 2 1 37 37 H 1.08997 * 109.58364 * 65.15047 * 5 4 2 38 38 H 1.09003 * 109.58354 * 185.57804 * 5 4 2 39 39 H 0.97008 * 120.00094 * 354.77577 * 9 7 6 40 40 H 1.08996 * 109.47401 * 299.99693 * 10 9 7 41 41 H 1.09005 * 109.47113 * 59.99892 * 10 9 7 42 42 H 1.09002 * 109.47367 * 300.00066 * 11 10 9 43 43 H 1.08997 * 109.47090 * 60.00399 * 11 10 9 44 44 H 0.97000 * 119.99578 * 180.02562 * 15 14 12 45 45 H 1.09001 * 109.61042 * 186.64181 * 20 6 5 46 46 H 1.08996 * 109.55806 * 66.21456 * 20 6 5 47 47 H 1.08004 * 119.99308 * 359.97438 * 24 23 21 48 48 H 1.08008 * 119.99747 * 179.72520 * 25 24 23 49 49 H 1.08002 * 120.00502 * 180.20998 * 26 25 24 50 50 H 1.08000 * 120.00157 * 179.79153 * 27 26 25 51 51 H 1.07993 * 120.00155 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 1.4997 -2.1542 -1.2642 6 7 1.8627 -2.8088 0.0002 7 6 2.5163 -3.9875 0.0002 8 8 2.7313 -4.5634 1.0492 9 7 2.9315 -4.5279 -1.1626 10 6 3.7404 -5.7492 -1.1552 11 6 4.0747 -6.1483 -2.5939 12 6 4.9064 -7.4050 -2.5864 13 1 5.1698 -7.8726 -1.6491 14 6 5.3310 -7.9579 -3.7758 15 7 5.0098 -7.3888 -4.9172 16 14 6.3613 -9.5161 -3.7665 17 1 6.5827 -9.9546 -2.3651 18 1 5.6499 -10.5844 -4.5133 19 1 7.6706 -9.2475 -4.4135 20 6 1.5004 -2.1543 1.2648 21 6 2.0399 -0.7206 1.2501 22 1 3.1297 -0.7422 1.2386 23 6 1.5641 0.0084 2.4802 24 6 0.2438 -0.0932 2.8765 25 6 -0.1938 0.5798 4.0019 26 6 0.6911 1.3466 4.7365 27 6 2.0117 1.4476 4.3407 28 6 2.4483 0.7785 3.2125 29 1 -0.3633 0.6111 0.8262 30 1 -0.3633 0.4098 -0.9424 31 1 -0.3632 -1.0211 0.1162 32 1 3.1295 1.4432 0.0005 33 1 1.6763 1.9562 -0.8903 34 1 1.6754 1.9566 0.8896 35 1 1.6958 -0.1935 -2.1399 36 1 3.1296 -0.7427 -1.2383 37 1 0.4148 -2.1347 -1.3672 38 1 1.9384 -2.7018 -2.0983 39 1 2.6945 -4.1081 -2.0045 40 1 4.6634 -5.5704 -0.6037 41 1 3.1808 -6.5528 -0.6763 42 1 3.1516 -6.3273 -3.1452 43 1 4.6341 -5.3449 -3.0731 44 1 5.3083 -7.7780 -5.7541 45 1 1.9395 -2.7016 2.0989 46 1 0.4155 -2.1354 1.3681 47 1 -0.4470 -0.6948 2.3043 48 1 -1.2266 0.5039 4.3090 49 1 0.3500 1.8697 5.6176 50 1 2.7024 2.0494 4.9126 51 1 3.4799 0.8577 2.9031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894131808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:01 Heat of formation + Delta-G solvation = -14.894986 kcal Electronic energy + Delta-G solvation = -28754.679062 eV Core-core repulsion = 25039.294490 eV Total energy + Delta-G solvation = -3715.384572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08882 -39.45039 -37.98557 -34.90286 -34.48031 -32.97153 -32.59636 -31.25016 -29.79175 -29.36630 -28.00123 -27.64542 -24.90529 -23.87527 -23.37726 -22.56737 -21.49190 -21.04248 -19.93164 -18.62837 -17.57145 -16.99468 -16.44792 -15.84766 -15.66264 -15.43410 -15.34188 -14.90716 -14.53103 -14.40205 -14.12733 -14.00956 -13.97327 -13.55365 -13.50014 -12.96831 -12.76438 -12.67785 -12.36446 -12.25215 -12.20936 -12.04015 -11.78231 -11.63180 -11.42927 -11.13655 -11.05959 -11.04865 -10.94827 -10.63717 -10.59648 -10.41010 -10.30485 -9.83791 -9.52043 -9.23003 -9.10192 -8.93009 -8.63976 -8.43668 -8.13130 -6.08227 -4.10498 1.13891 1.18849 2.91638 3.29358 3.36937 3.42545 3.53772 3.59825 4.21394 4.35748 4.43142 4.46906 4.54949 4.69603 4.76274 4.80818 4.91008 4.96029 5.05465 5.09995 5.19670 5.28491 5.29016 5.30858 5.40086 5.46451 5.49533 5.61681 5.65352 5.70234 5.75433 5.79226 5.80645 5.85821 5.90858 6.00862 6.06802 6.19760 6.25694 6.30112 6.30703 6.42510 6.45248 6.62652 6.79235 6.79950 7.03488 7.21522 7.57673 7.64796 7.91289 8.26826 8.40534 8.94373 9.01640 9.54211 11.03510 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.002290 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.672705 B =12225.445302 C =12744.189377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.052 4.052 3 C -0.140 4.140 4 C -0.125 4.125 5 C 0.109 3.891 6 N -0.633 5.633 7 C 0.703 3.297 8 O -0.596 6.596 9 N -0.739 5.739 10 C 0.139 3.861 11 C 0.013 3.987 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.138 3.862 21 C -0.055 4.055 22 H 0.083 0.917 23 C -0.063 4.063 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.113 4.113 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.125 0.875 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 22.858 12.397 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.163 4.163 5 C -0.014 4.014 6 N -0.372 5.372 7 C 0.404 3.596 8 O -0.475 6.475 9 N -0.395 5.395 10 C 0.016 3.984 11 C -0.024 4.024 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.015 3.985 21 C -0.074 4.074 22 H 0.101 0.899 23 C -0.064 4.064 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.131 4.131 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.228 0.772 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.143 0.857 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.233 22.356 12.960 28.177 hybrid contribution 0.486 -0.537 -0.590 0.934 sum -10.747 21.819 12.370 27.287 Atomic orbital electron populations 1.22202 0.94584 1.02179 1.02108 1.20441 0.95836 0.95146 0.93770 1.21880 1.00947 0.95111 1.01808 1.22017 1.01528 0.95171 0.97591 1.21655 1.00129 0.93276 0.86371 1.47237 1.61867 1.21498 1.06576 1.15966 0.78338 0.80452 0.84837 1.90874 1.63046 1.62467 1.31064 1.45710 1.56995 1.30325 1.06433 1.21589 0.92629 0.82997 1.01137 1.19323 0.97185 0.96959 0.88982 1.21093 1.32569 1.09244 0.92827 0.92170 1.25001 0.96265 0.97602 0.95503 1.69972 1.45976 1.40070 0.97360 0.86457 0.79914 0.82963 0.78243 1.19567 1.20953 1.20964 1.21475 0.99291 0.91013 0.86734 1.20605 1.01016 0.94132 0.91690 0.89876 1.19675 0.93721 0.97191 0.95803 1.21166 0.95544 0.99819 0.96839 1.21135 0.99622 0.97589 0.95488 1.21120 0.93803 0.99635 0.99907 1.21119 0.95976 0.99775 0.96918 1.21067 0.99443 0.97293 0.95300 0.91802 0.92553 0.92063 0.92725 0.92674 0.92335 0.90456 0.91135 0.91272 0.90050 0.77220 0.92906 0.92735 0.96009 0.96036 0.92947 0.88835 0.91670 0.85689 0.86246 0.86415 0.86284 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 6.34 37.16 0.24 -0.91 16 2 C -0.05 -0.43 0.54 -154.47 -0.08 -0.51 16 3 C -0.14 -1.08 8.13 37.16 0.30 -0.78 16 4 C -0.12 -1.10 4.90 -26.61 -0.13 -1.23 16 5 C 0.11 1.14 5.97 -3.71 -0.02 1.12 16 6 N -0.63 -8.63 2.97 -178.49 -0.53 -9.16 16 7 C 0.70 12.85 8.29 -86.91 -0.72 12.12 16 8 O -0.60 -13.20 15.78 5.30 0.08 -13.12 16 9 N -0.74 -13.57 5.47 -65.23 -0.36 -13.93 16 10 C 0.14 3.06 5.62 -4.04 -0.02 3.04 16 11 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 13 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.14 1.66 4.97 -3.71 -0.02 1.64 16 21 C -0.05 -0.54 1.93 -91.65 -0.18 -0.72 16 22 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 23 C -0.06 -0.58 3.55 -104.62 -0.37 -0.96 16 24 C -0.12 -1.00 6.99 -39.59 -0.28 -1.27 16 25 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 26 C -0.13 -0.99 10.05 -39.59 -0.40 -1.39 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 28 C -0.11 -1.01 9.16 -39.58 -0.36 -1.37 16 29 H 0.06 0.47 5.79 -51.93 -0.30 0.17 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.48 4.84 -51.93 -0.25 0.23 16 32 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.47 6.85 -51.93 -0.36 0.11 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.63 6.84 -51.93 -0.36 0.28 16 38 H 0.08 0.87 5.57 -51.93 -0.29 0.58 16 39 H 0.39 6.28 5.93 -40.82 -0.24 6.04 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.09 1.36 7.03 -51.93 -0.37 1.00 16 46 H 0.07 0.69 5.00 -51.93 -0.26 0.43 16 47 H 0.13 0.98 5.29 -52.48 -0.28 0.70 16 48 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 49 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 50 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 51 H 0.12 0.97 8.00 -52.49 -0.42 0.55 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -32.38 387.14 -10.79 -43.17 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.14 Total: 3.22 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.39 Total: -7.04 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.15 Total: -48.55 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.38 -10.79 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894131808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.274 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds