Wall clock time and date at job start Tue Mar 31 2020 16:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.44670 * 2 1 4 4 C 1.53044 * 109.46253 * 240.03329 * 2 1 3 5 5 C 1.53193 * 109.30977 * 301.34290 * 4 2 1 6 6 N 1.46930 * 108.77531 * 305.36373 * 5 4 2 7 7 C 1.34779 * 120.63054 * 233.61407 * 6 5 4 8 8 O 1.21579 * 119.99920 * 184.97049 * 7 6 5 9 9 N 1.34779 * 119.99737 * 4.96400 * 7 6 5 10 10 C 1.46498 * 119.99766 * 174.78205 * 9 7 6 11 11 C 1.52998 * 109.47041 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47305 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99713 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00506 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99785 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00411 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46671 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47432 * 119.99487 * 16 14 12 19 19 H 1.48497 * 109.46711 * 239.99715 * 16 14 12 20 20 C 1.46933 * 118.76476 * 53.58901 * 6 5 4 21 21 C 1.53037 * 109.46273 * 119.96097 * 2 1 3 22 22 H 1.09006 * 109.49976 * 178.63857 * 21 2 1 23 23 C 1.50697 * 109.49896 * 298.70873 * 21 2 1 24 24 C 1.38233 * 120.00393 * 74.63088 * 23 21 2 25 25 C 1.38232 * 120.00177 * 180.25392 * 24 23 21 26 26 C 1.38229 * 120.00209 * 359.53454 * 25 24 23 27 27 C 1.38237 * 119.99910 * 0.42520 * 26 25 24 28 28 C 1.38239 * 120.00014 * 359.80475 * 27 26 25 29 29 H 1.08994 * 109.47072 * 306.48832 * 1 2 3 30 30 H 1.08996 * 109.46996 * 66.49557 * 1 2 3 31 31 H 1.08999 * 109.46372 * 186.49453 * 1 2 3 32 32 H 1.09007 * 109.47013 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46733 * 299.96495 * 3 2 1 34 34 H 1.08990 * 109.47555 * 59.96423 * 3 2 1 35 35 H 1.09003 * 109.49581 * 61.29236 * 4 2 1 36 36 H 1.09000 * 109.49847 * 181.38975 * 4 2 1 37 37 H 1.08997 * 109.58364 * 65.15047 * 5 4 2 38 38 H 1.09003 * 109.58354 * 185.57804 * 5 4 2 39 39 H 0.97008 * 120.00094 * 354.77577 * 9 7 6 40 40 H 1.08996 * 109.47401 * 299.99693 * 10 9 7 41 41 H 1.09005 * 109.47113 * 59.99892 * 10 9 7 42 42 H 1.09002 * 109.47367 * 300.00066 * 11 10 9 43 43 H 1.08997 * 109.47090 * 60.00399 * 11 10 9 44 44 H 0.97000 * 119.99578 * 180.02562 * 15 14 12 45 45 H 1.09001 * 109.61042 * 186.64181 * 20 6 5 46 46 H 1.08996 * 109.55806 * 66.21456 * 20 6 5 47 47 H 1.08004 * 119.99308 * 359.97438 * 24 23 21 48 48 H 1.08008 * 119.99747 * 179.72520 * 25 24 23 49 49 H 1.08002 * 120.00502 * 180.20998 * 26 25 24 50 50 H 1.08000 * 120.00157 * 179.79153 * 27 26 25 51 51 H 1.07993 * 120.00155 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 1.4997 -2.1542 -1.2642 6 7 1.8627 -2.8088 0.0002 7 6 2.5163 -3.9875 0.0002 8 8 2.7313 -4.5634 1.0492 9 7 2.9315 -4.5279 -1.1626 10 6 3.7404 -5.7492 -1.1552 11 6 4.0747 -6.1483 -2.5939 12 6 4.9064 -7.4050 -2.5864 13 1 5.1698 -7.8726 -1.6491 14 6 5.3310 -7.9579 -3.7758 15 7 5.0098 -7.3888 -4.9172 16 14 6.3613 -9.5161 -3.7665 17 1 6.5827 -9.9546 -2.3651 18 1 5.6499 -10.5844 -4.5133 19 1 7.6706 -9.2475 -4.4135 20 6 1.5004 -2.1543 1.2648 21 6 2.0399 -0.7206 1.2501 22 1 3.1297 -0.7422 1.2386 23 6 1.5641 0.0084 2.4802 24 6 0.2438 -0.0932 2.8765 25 6 -0.1938 0.5798 4.0019 26 6 0.6911 1.3466 4.7365 27 6 2.0117 1.4476 4.3407 28 6 2.4483 0.7785 3.2125 29 1 -0.3633 0.6111 0.8262 30 1 -0.3633 0.4098 -0.9424 31 1 -0.3632 -1.0211 0.1162 32 1 3.1295 1.4432 0.0005 33 1 1.6763 1.9562 -0.8903 34 1 1.6754 1.9566 0.8896 35 1 1.6958 -0.1935 -2.1399 36 1 3.1296 -0.7427 -1.2383 37 1 0.4148 -2.1347 -1.3672 38 1 1.9384 -2.7018 -2.0983 39 1 2.6945 -4.1081 -2.0045 40 1 4.6634 -5.5704 -0.6037 41 1 3.1808 -6.5528 -0.6763 42 1 3.1516 -6.3273 -3.1452 43 1 4.6341 -5.3449 -3.0731 44 1 5.3083 -7.7780 -5.7541 45 1 1.9395 -2.7016 2.0989 46 1 0.4155 -2.1354 1.3681 47 1 -0.4470 -0.6948 2.3043 48 1 -1.2266 0.5039 4.3090 49 1 0.3500 1.8697 5.6176 50 1 2.7024 2.0494 4.9126 51 1 3.4799 0.8577 2.9031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894131808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:00 Heat of formation + Delta-G solvation = -32.209202 kcal Electronic energy + Delta-G solvation = -28755.429862 eV Core-core repulsion = 25039.294490 eV Total energy + Delta-G solvation = -3716.135373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02783 -40.57560 -38.86957 -36.65843 -35.61236 -34.77207 -33.55651 -31.87997 -31.54213 -30.18737 -29.05892 -28.25612 -26.69199 -24.84015 -24.38049 -23.31096 -22.86476 -22.19954 -21.19187 -19.75299 -18.63612 -18.48520 -17.67455 -17.21985 -16.72390 -16.51903 -16.28706 -16.16541 -15.66958 -15.52284 -15.34365 -15.09221 -14.95978 -14.69626 -14.36277 -14.28007 -14.16097 -13.63093 -13.42496 -13.19810 -13.06043 -12.95153 -12.85601 -12.75169 -12.54564 -12.51563 -12.36004 -12.25817 -12.11364 -11.74811 -11.70470 -11.66219 -11.49562 -11.38017 -11.23750 -10.99882 -10.60997 -10.17214 -9.73210 -9.61999 -9.33965 -8.24258 -6.34287 0.49443 0.55773 1.40995 1.41755 1.54771 1.65127 2.11469 2.40665 2.92237 2.98067 3.10464 3.59777 3.67358 3.78301 3.99146 4.06811 4.13340 4.20311 4.23281 4.31560 4.36606 4.40752 4.46379 4.50385 4.60951 4.65162 4.67554 4.77841 4.81124 4.85142 4.87499 4.91371 4.97800 5.06048 5.09948 5.13463 5.20020 5.22545 5.29113 5.33330 5.42763 5.49584 5.53850 5.54714 5.58394 5.65816 5.68807 5.76683 5.79084 5.94208 6.16999 6.17420 6.78514 6.97718 7.34870 7.54439 8.87882 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.002290 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.672705 B =12225.445302 C =12744.189377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.134 4.134 4 C -0.120 4.120 5 C 0.103 3.897 6 N -0.623 5.623 7 C 0.699 3.301 8 O -0.639 6.639 9 N -0.734 5.734 10 C 0.160 3.840 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.925 5.925 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.138 3.862 21 C -0.045 4.045 22 H 0.064 0.936 23 C -0.073 4.073 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.127 4.127 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.404 0.596 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.266 0.734 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.132 0.868 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.135 0.865 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 24.131 12.424 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.159 4.159 5 C -0.019 4.019 6 N -0.360 5.360 7 C 0.400 3.600 8 O -0.522 6.522 9 N -0.391 5.391 10 C 0.036 3.964 11 C -0.012 4.012 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.192 4.192 15 N -0.565 5.565 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C 0.016 3.984 21 C -0.065 4.065 22 H 0.083 0.917 23 C -0.074 4.074 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.145 4.145 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.242 0.758 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.150 0.850 48 H 0.156 0.844 49 H 0.156 0.844 50 H 0.153 0.847 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.294 23.690 12.970 29.675 hybrid contribution 0.763 -0.854 -0.560 1.275 sum -11.531 22.836 12.410 28.433 Atomic orbital electron populations 1.22166 0.93425 1.02104 1.02987 1.20426 0.96664 0.95254 0.92449 1.21815 1.00592 0.94509 1.02250 1.22010 1.00704 0.94203 0.98936 1.21950 1.01593 0.93910 0.84477 1.47276 1.60225 1.19949 1.08568 1.16102 0.78553 0.81492 0.83846 1.90839 1.64838 1.64078 1.32422 1.45407 1.56808 1.29482 1.07381 1.21077 0.92481 0.84111 0.98752 1.19114 0.95929 0.95799 0.90347 1.21473 1.33366 1.10456 0.93038 0.92415 1.25866 0.97352 1.00896 0.95054 1.70065 1.46860 1.41595 0.97992 0.85391 0.78316 0.78857 0.78446 1.19087 1.20154 1.20152 1.21579 1.00217 0.91712 0.84920 1.20462 0.99783 0.92898 0.93322 0.91747 1.19635 0.94280 0.97709 0.95766 1.21286 0.95304 1.00136 0.97367 1.21420 1.00700 0.97126 0.95101 1.21432 0.93607 0.99402 1.00443 1.21369 0.96678 0.99713 0.96694 1.21194 0.99579 0.97840 0.95894 0.91547 0.91217 0.92429 0.93283 0.91456 0.92587 0.88037 0.92489 0.89003 0.90285 0.75754 0.94009 0.93973 0.97304 0.97289 0.92525 0.91871 0.89772 0.85050 0.84358 0.84394 0.84719 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 6.34 71.98 0.46 -1.41 16 2 C -0.05 -0.72 0.54 -52.15 -0.03 -0.75 16 3 C -0.13 -1.84 8.13 71.98 0.59 -1.26 16 4 C -0.12 -1.92 4.90 30.67 0.15 -1.77 16 5 C 0.10 2.00 5.97 86.36 0.52 2.52 16 6 N -0.62 -16.95 2.97 -836.88 -2.49 -19.44 16 7 C 0.70 26.12 8.29 179.05 1.49 27.60 16 8 O -0.64 -29.40 15.78 -3.96 -0.06 -29.46 16 9 N -0.73 -27.48 5.47 -478.55 -2.62 -30.09 16 10 C 0.16 7.24 5.62 86.38 0.49 7.73 16 11 C 0.03 1.32 5.09 29.85 0.15 1.47 16 12 C -0.54 -30.90 9.11 25.60 0.23 -30.66 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 14 C 0.01 0.40 5.46 84.65 0.46 0.86 16 15 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 16 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.14 3.35 4.97 86.36 0.43 3.77 16 21 C -0.05 -0.88 1.93 -11.46 -0.02 -0.90 16 22 H 0.06 1.48 7.95 -2.38 -0.02 1.46 16 23 C -0.07 -1.31 3.55 -19.87 -0.07 -1.38 16 24 C -0.12 -1.96 6.99 22.27 0.16 -1.81 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 27 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 28 C -0.13 -2.22 9.16 22.27 0.20 -2.01 16 29 H 0.07 0.82 5.79 -2.39 -0.01 0.81 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.76 4.84 -2.39 -0.01 0.75 16 32 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.81 6.85 -2.39 -0.02 0.80 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.44 6.84 -2.39 -0.02 1.42 16 38 H 0.08 1.59 5.57 -2.39 -0.01 1.58 16 39 H 0.40 13.02 5.93 -92.70 -0.55 12.47 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.06 1.93 7.03 -2.39 -0.02 1.92 16 46 H 0.08 1.72 5.00 -2.39 -0.01 1.70 16 47 H 0.13 1.84 5.29 -2.91 -0.02 1.82 16 48 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 50 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 51 H 0.12 1.98 8.00 -2.91 -0.02 1.96 16 Total: -1.00 -70.31 387.14 3.38 -66.93 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.37 Total: 22.88 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.86 Total: -2.78 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -4.82 Total: -103.61 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.06 Total: -29.46 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -70.31 3.38 -66.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894131808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.718 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds