Wall clock time and date at job start Tue Mar 31 2020 16:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46972 * 2 1 4 4 C 1.38295 * 120.08856 * 90.00179 * 3 2 1 5 5 C 1.37836 * 120.21956 * 180.30056 * 4 3 2 6 6 C 1.39625 * 120.28845 * 359.46402 * 5 4 3 7 7 C 1.38554 * 119.04285 * 0.52904 * 6 5 4 8 8 C 1.38185 * 120.47086 * 359.72812 * 7 6 5 9 9 C 1.51214 * 108.55894 * 179.72687 * 7 6 5 10 10 C 1.53738 * 104.58977 * 0.02562 * 9 7 6 11 11 N 1.39857 * 129.33774 * 180.19906 * 6 5 4 12 12 C 1.34777 * 124.98042 * 0.33113 * 11 6 5 13 13 O 1.21584 * 119.99781 * 359.94777 * 12 11 6 14 14 N 1.34776 * 119.99734 * 179.97438 * 12 11 6 15 15 C 1.46499 * 120.00124 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47272 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47075 * 299.99822 * 16 15 14 18 18 C 1.53006 * 109.46907 * 60.00177 * 16 15 14 19 19 C 1.53000 * 109.47080 * 179.97438 * 16 15 14 20 20 C 1.50697 * 109.47312 * 180.02562 * 19 16 15 21 21 H 1.08001 * 119.99414 * 359.97438 * 20 19 16 22 22 C 1.37876 * 120.00190 * 180.02562 * 20 19 16 23 23 N 1.31515 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46954 * 60.00503 * 24 22 20 26 26 H 1.48498 * 109.46819 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47331 * 299.99901 * 24 22 20 28 28 H 1.08994 * 109.47360 * 60.00170 * 1 2 3 29 29 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47219 * 300.00137 * 1 2 3 31 31 H 1.08999 * 109.47219 * 239.99863 * 2 1 3 32 32 H 1.09003 * 109.47110 * 119.99810 * 2 1 3 33 33 H 1.08002 * 119.88598 * 0.02562 * 4 3 2 34 34 H 1.08008 * 119.85492 * 179.70005 * 5 4 3 35 35 H 1.07998 * 119.92916 * 180.02562 * 8 7 6 36 36 H 1.08998 * 110.41077 * 118.77945 * 9 7 6 37 37 H 1.08998 * 110.41699 * 241.22060 * 9 7 6 38 38 H 1.08996 * 110.30186 * 118.93178 * 10 9 7 39 39 H 1.08999 * 110.29628 * 241.06876 * 10 9 7 40 40 H 0.97002 * 119.99984 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.46721 * 300.00435 * 15 14 12 42 42 H 1.09006 * 109.47020 * 59.99993 * 15 14 12 43 43 H 1.09010 * 109.47131 * 60.00546 * 17 16 15 44 44 H 1.09003 * 109.47072 * 179.97438 * 17 16 15 45 45 H 1.08991 * 109.47644 * 300.00398 * 17 16 15 46 46 H 1.09003 * 109.47019 * 59.99971 * 18 16 15 47 47 H 1.09001 * 109.46592 * 179.97438 * 18 16 15 48 48 H 1.08998 * 109.47207 * 299.99827 * 18 16 15 49 49 H 1.09003 * 109.47333 * 300.00327 * 19 16 15 50 50 H 1.08998 * 109.47246 * 59.99863 * 19 16 15 51 51 H 0.97005 * 119.99558 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2635 2.0746 1.1966 5 6 2.7170 3.3762 1.1998 6 6 2.9572 4.0411 -0.0043 7 6 2.7226 3.3774 -1.1976 8 6 2.2628 2.0743 -1.1961 9 6 3.0516 4.3113 -2.3405 10 6 3.5109 5.6106 -1.6590 11 7 3.4168 5.3441 -0.2210 12 6 3.7284 6.2251 0.7502 13 8 3.6162 5.9071 1.9183 14 7 4.1640 7.4588 0.4264 15 6 4.5022 8.4167 1.4820 16 6 4.9666 9.7300 0.8492 17 6 6.2000 9.4703 -0.0180 18 6 3.8442 10.3028 -0.0187 19 6 5.3192 10.7306 1.9517 20 6 5.7760 12.0244 1.3285 21 1 5.8116 12.1230 0.2536 22 6 6.1493 13.0819 2.1306 23 7 6.1073 12.9613 3.4395 24 14 6.7162 14.6854 1.3580 25 1 5.6269 15.2413 0.5157 26 1 7.0595 15.6562 2.4281 27 1 7.9134 14.4334 0.5164 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0838 1.5649 2.1317 34 1 2.8909 3.8827 2.1377 35 1 2.0833 1.5651 -2.1314 36 1 3.8548 3.8977 -2.9502 37 1 2.1662 4.4936 -2.9496 38 1 4.5402 5.8391 -1.9352 39 1 2.8529 6.4349 -1.9340 40 1 4.2535 7.7125 -0.5056 41 1 3.6236 8.6013 2.1001 42 1 5.3021 8.0088 2.1001 43 1 5.9483 8.7576 -0.8035 44 1 6.5305 10.4059 -0.4691 45 1 6.9994 9.0622 0.6003 46 1 2.9655 10.4879 0.5992 47 1 4.1749 11.2387 -0.4691 48 1 3.5925 9.5902 -0.8041 49 1 4.4402 10.9156 2.5692 50 1 6.1185 10.3228 2.5704 51 1 6.3704 13.7052 4.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894858689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:42 Heat of formation + Delta-G solvation = -22.950817 kcal Electronic energy + Delta-G solvation = -28089.838430 eV Core-core repulsion = 24374.104531 eV Total energy + Delta-G solvation = -3715.733899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30475 -39.30106 -37.46905 -36.76833 -33.97155 -33.21532 -32.48389 -32.01163 -29.31399 -28.90940 -27.13005 -26.55974 -26.20310 -24.16233 -23.68934 -22.77110 -22.40293 -20.59515 -20.11123 -18.81341 -17.59590 -16.72654 -16.52809 -16.31672 -15.59429 -15.43908 -14.93452 -14.89646 -14.50961 -14.12548 -13.88306 -13.73837 -13.66757 -13.56655 -13.17530 -12.95309 -12.81361 -12.71572 -12.45965 -12.43707 -12.24759 -12.08097 -11.94514 -11.42666 -11.26816 -11.20194 -11.03380 -10.97790 -10.89181 -10.66489 -10.44340 -10.29853 -10.16725 -10.06196 -9.91699 -9.24722 -8.97083 -8.92680 -8.84996 -8.37649 -7.73563 -6.01689 -4.03316 1.19498 1.29274 2.42523 3.13080 3.30510 3.36198 3.37056 3.68427 3.83542 4.22993 4.31328 4.43553 4.64125 4.73577 4.80733 4.86321 5.03089 5.10952 5.18746 5.24473 5.33550 5.36381 5.37677 5.46534 5.52585 5.55025 5.58479 5.63662 5.69138 5.73126 5.87799 5.92374 6.04026 6.11744 6.17546 6.23824 6.30186 6.34968 6.38416 6.48545 6.54535 6.58482 6.71450 6.88395 7.01263 7.03270 7.06513 7.08542 7.61300 7.73398 7.88142 7.96545 8.37698 8.53796 9.01034 9.59759 11.09636 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.002092 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.699221 B =13380.905930 C =13920.229720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.089 4.089 5 C -0.132 4.132 6 C 0.172 3.828 7 C -0.145 4.145 8 C -0.075 4.075 9 C -0.080 4.080 10 C 0.096 3.904 11 N -0.571 5.571 12 C 0.710 3.290 13 O -0.571 6.571 14 N -0.727 5.727 15 C 0.144 3.856 16 C -0.072 4.072 17 C -0.126 4.126 18 C -0.127 4.127 19 C 0.037 3.963 20 C -0.513 4.513 21 H 0.059 0.941 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.890 3.110 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.396 0.604 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.027 0.973 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 -23.247 -13.000 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.116 4.116 4 C -0.107 4.107 5 C -0.153 4.153 6 C 0.075 3.925 7 C -0.149 4.149 8 C -0.093 4.093 9 C -0.118 4.118 10 C -0.026 4.026 11 N -0.297 5.297 12 C 0.412 3.588 13 O -0.448 6.448 14 N -0.382 5.382 15 C 0.021 3.979 16 C -0.073 4.073 17 C -0.184 4.184 18 C -0.184 4.184 19 C -0.001 4.001 20 C -0.551 4.551 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.718 3.282 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.231 0.769 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.570 -23.143 -11.887 27.393 hybrid contribution 0.445 1.260 -0.768 1.541 sum -8.125 -21.884 -12.655 26.553 Atomic orbital electron populations 1.21763 0.94986 1.01439 1.02268 1.20435 0.95941 0.92523 1.02589 1.19680 1.02523 0.96568 0.92823 1.20786 0.98517 0.93756 0.97660 1.20994 1.02100 0.94723 0.97435 1.18143 0.96002 0.83642 0.94677 1.19908 1.06004 0.95268 0.93710 1.20118 0.99150 0.92383 0.97695 1.21021 1.02285 0.92205 0.96259 1.22137 1.02436 0.98960 0.79067 1.45069 1.66367 1.11668 1.06628 1.15684 0.78621 0.80629 0.83821 1.90895 1.59569 1.77755 1.16571 1.45428 1.69755 1.11782 1.11224 1.21600 1.00207 0.87590 0.88477 1.20931 0.94896 0.93290 0.98181 1.21758 0.97518 1.00914 0.98181 1.21762 0.97976 1.00465 0.98184 1.19082 0.96907 0.92130 0.91934 1.21128 1.43918 0.97225 0.92812 0.92311 1.25018 0.95927 0.98746 0.94824 1.69956 1.48295 1.31930 1.03101 0.86696 0.79127 0.83564 0.78811 1.20335 1.21392 1.20344 0.92637 0.92629 0.92530 0.91304 0.91177 0.85754 0.84061 0.86081 0.89219 0.89219 0.90026 0.90038 0.76863 0.91683 0.91689 0.95445 0.91338 0.93276 0.93280 0.91329 0.95442 0.96269 0.96266 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.90 37.16 0.37 -0.57 16 2 C -0.08 -0.54 6.07 -27.88 -0.17 -0.70 16 3 C -0.11 -1.08 5.14 -104.60 -0.54 -1.62 16 4 C -0.09 -0.97 9.68 -39.71 -0.38 -1.35 16 5 C -0.13 -1.80 9.46 -39.21 -0.37 -2.17 16 6 C 0.17 2.30 6.62 -83.56 -0.55 1.75 16 7 C -0.15 -1.53 6.23 -104.27 -0.65 -2.18 16 8 C -0.07 -0.70 9.70 -39.60 -0.38 -1.08 16 9 C -0.08 -0.61 6.93 -27.25 -0.19 -0.80 16 10 C 0.10 0.87 6.32 -3.64 -0.02 0.85 16 11 N -0.57 -7.66 3.13 -118.25 -0.37 -8.03 16 12 C 0.71 11.64 8.43 -86.92 -0.73 10.91 16 13 O -0.57 -11.36 14.51 5.29 0.08 -11.28 16 14 N -0.73 -10.93 4.91 -65.22 -0.32 -11.25 16 15 C 0.14 2.56 4.56 -4.04 -0.02 2.55 16 16 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 17 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 18 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 19 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 20 C -0.51 -13.46 7.65 -34.44 -0.26 -13.72 16 21 H 0.06 1.47 5.68 -52.49 -0.30 1.18 16 22 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 24 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 2.22 6.28 -52.48 -0.33 1.89 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 4.99 5.10 -40.82 -0.21 4.78 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.03 0.38 6.86 -51.92 -0.36 0.02 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 48 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -31.72 399.97 -11.03 -42.74 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.55 Total: 2.38 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -3.60 Total: -11.12 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.05 Total: -44.79 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.72 -11.03 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894858689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.794 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds