Wall clock time and date at job start Tue Mar 31 2020 16:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46972 * 2 1 4 4 C 1.38295 * 120.08856 * 90.00179 * 3 2 1 5 5 C 1.37836 * 120.21956 * 180.30056 * 4 3 2 6 6 C 1.39625 * 120.28845 * 359.46402 * 5 4 3 7 7 C 1.38554 * 119.04285 * 0.52904 * 6 5 4 8 8 C 1.38185 * 120.47086 * 359.72812 * 7 6 5 9 9 C 1.51214 * 108.55894 * 179.72687 * 7 6 5 10 10 C 1.53738 * 104.58977 * 0.02562 * 9 7 6 11 11 N 1.39857 * 129.33774 * 180.19906 * 6 5 4 12 12 C 1.34777 * 124.98042 * 0.33113 * 11 6 5 13 13 O 1.21584 * 119.99781 * 359.94777 * 12 11 6 14 14 N 1.34776 * 119.99734 * 179.97438 * 12 11 6 15 15 C 1.46499 * 120.00124 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47272 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47075 * 299.99822 * 16 15 14 18 18 C 1.53006 * 109.46907 * 60.00177 * 16 15 14 19 19 C 1.53000 * 109.47080 * 179.97438 * 16 15 14 20 20 C 1.50697 * 109.47312 * 180.02562 * 19 16 15 21 21 H 1.08001 * 119.99414 * 359.97438 * 20 19 16 22 22 C 1.37876 * 120.00190 * 180.02562 * 20 19 16 23 23 N 1.31515 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46954 * 60.00503 * 24 22 20 26 26 H 1.48498 * 109.46819 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47331 * 299.99901 * 24 22 20 28 28 H 1.08994 * 109.47360 * 60.00170 * 1 2 3 29 29 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47219 * 300.00137 * 1 2 3 31 31 H 1.08999 * 109.47219 * 239.99863 * 2 1 3 32 32 H 1.09003 * 109.47110 * 119.99810 * 2 1 3 33 33 H 1.08002 * 119.88598 * 0.02562 * 4 3 2 34 34 H 1.08008 * 119.85492 * 179.70005 * 5 4 3 35 35 H 1.07998 * 119.92916 * 180.02562 * 8 7 6 36 36 H 1.08998 * 110.41077 * 118.77945 * 9 7 6 37 37 H 1.08998 * 110.41699 * 241.22060 * 9 7 6 38 38 H 1.08996 * 110.30186 * 118.93178 * 10 9 7 39 39 H 1.08999 * 110.29628 * 241.06876 * 10 9 7 40 40 H 0.97002 * 119.99984 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.46721 * 300.00435 * 15 14 12 42 42 H 1.09006 * 109.47020 * 59.99993 * 15 14 12 43 43 H 1.09010 * 109.47131 * 60.00546 * 17 16 15 44 44 H 1.09003 * 109.47072 * 179.97438 * 17 16 15 45 45 H 1.08991 * 109.47644 * 300.00398 * 17 16 15 46 46 H 1.09003 * 109.47019 * 59.99971 * 18 16 15 47 47 H 1.09001 * 109.46592 * 179.97438 * 18 16 15 48 48 H 1.08998 * 109.47207 * 299.99827 * 18 16 15 49 49 H 1.09003 * 109.47333 * 300.00327 * 19 16 15 50 50 H 1.08998 * 109.47246 * 59.99863 * 19 16 15 51 51 H 0.97005 * 119.99558 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2635 2.0746 1.1966 5 6 2.7170 3.3762 1.1998 6 6 2.9572 4.0411 -0.0043 7 6 2.7226 3.3774 -1.1976 8 6 2.2628 2.0743 -1.1961 9 6 3.0516 4.3113 -2.3405 10 6 3.5109 5.6106 -1.6590 11 7 3.4168 5.3441 -0.2210 12 6 3.7284 6.2251 0.7502 13 8 3.6162 5.9071 1.9183 14 7 4.1640 7.4588 0.4264 15 6 4.5022 8.4167 1.4820 16 6 4.9666 9.7300 0.8492 17 6 6.2000 9.4703 -0.0180 18 6 3.8442 10.3028 -0.0187 19 6 5.3192 10.7306 1.9517 20 6 5.7760 12.0244 1.3285 21 1 5.8116 12.1230 0.2536 22 6 6.1493 13.0819 2.1306 23 7 6.1073 12.9613 3.4395 24 14 6.7162 14.6854 1.3580 25 1 5.6269 15.2413 0.5157 26 1 7.0595 15.6562 2.4281 27 1 7.9134 14.4334 0.5164 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0838 1.5649 2.1317 34 1 2.8909 3.8827 2.1377 35 1 2.0833 1.5651 -2.1314 36 1 3.8548 3.8977 -2.9502 37 1 2.1662 4.4936 -2.9496 38 1 4.5402 5.8391 -1.9352 39 1 2.8529 6.4349 -1.9340 40 1 4.2535 7.7125 -0.5056 41 1 3.6236 8.6013 2.1001 42 1 5.3021 8.0088 2.1001 43 1 5.9483 8.7576 -0.8035 44 1 6.5305 10.4059 -0.4691 45 1 6.9994 9.0622 0.6003 46 1 2.9655 10.4879 0.5992 47 1 4.1749 11.2387 -0.4691 48 1 3.5925 9.5902 -0.8041 49 1 4.4402 10.9156 2.5692 50 1 6.1185 10.3228 2.5704 51 1 6.3704 13.7052 4.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894858689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:41 Heat of formation + Delta-G solvation = -39.424109 kcal Electronic energy + Delta-G solvation = -28090.552766 eV Core-core repulsion = 24374.104531 eV Total energy + Delta-G solvation = -3716.448235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27919 -40.42812 -38.80451 -37.82022 -35.40710 -34.34814 -33.70861 -33.24995 -30.13562 -29.72810 -29.01568 -27.98628 -27.57399 -25.32115 -24.56479 -24.16025 -23.30227 -21.47064 -21.17513 -20.11545 -18.93633 -18.36335 -17.74030 -17.46182 -16.64987 -16.37169 -16.24429 -16.03892 -15.98932 -15.24790 -15.14241 -14.86181 -14.60004 -14.40857 -14.31516 -14.23951 -13.94957 -13.90668 -13.70110 -13.50366 -13.10705 -12.94313 -12.84444 -12.77018 -12.75782 -12.59058 -12.34418 -12.24264 -12.07870 -12.02081 -11.93176 -11.68273 -11.56723 -11.30896 -11.01360 -11.00509 -10.88822 -10.50822 -10.23811 -9.71677 -8.62897 -8.13851 -6.21999 0.33823 0.44187 1.33643 1.43090 1.45107 1.52345 1.94418 2.44090 2.78634 2.82827 3.20465 3.51622 3.60812 3.91132 3.96220 4.04464 4.12085 4.17015 4.19013 4.23039 4.27255 4.48948 4.56569 4.60561 4.61724 4.66413 4.68235 4.71371 4.81750 4.92949 4.93069 5.01265 5.04507 5.10304 5.10446 5.15160 5.15727 5.26778 5.32313 5.41684 5.45163 5.48525 5.48815 5.51066 5.53149 5.55684 5.74923 5.78328 5.89033 5.94206 6.12692 6.29619 6.75001 6.92870 7.31904 7.45719 8.98432 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.002092 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.699221 B =13380.905930 C =13920.229720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.108 4.108 4 C -0.098 4.098 5 C -0.161 4.161 6 C 0.132 3.868 7 C -0.138 4.138 8 C -0.074 4.074 9 C -0.073 4.073 10 C 0.084 3.916 11 N -0.571 5.571 12 C 0.705 3.295 13 O -0.619 6.619 14 N -0.712 5.712 15 C 0.160 3.840 16 C -0.063 4.063 17 C -0.121 4.121 18 C -0.121 4.121 19 C 0.040 3.960 20 C -0.514 4.514 21 H 0.075 0.925 22 C -0.007 4.007 23 N -0.939 5.939 24 Si 0.960 3.040 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.266 1.266 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.411 0.589 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.059 0.941 48 H 0.068 0.932 49 H -0.014 1.014 50 H -0.014 1.014 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -24.742 -17.813 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.109 4.109 4 C -0.117 4.117 5 C -0.182 4.182 6 C 0.036 3.964 7 C -0.141 4.141 8 C -0.093 4.093 9 C -0.110 4.110 10 C -0.037 4.037 11 N -0.297 5.297 12 C 0.407 3.593 13 O -0.499 6.499 14 N -0.368 5.368 15 C 0.035 3.965 16 C -0.064 4.064 17 C -0.178 4.178 18 C -0.178 4.178 19 C 0.003 3.997 20 C -0.552 4.552 21 H 0.093 0.907 22 C -0.204 4.204 23 N -0.580 5.580 24 Si 0.786 3.214 25 H -0.191 1.191 26 H -0.218 1.218 27 H -0.191 1.191 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.173 0.827 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.004 0.996 50 H 0.004 0.996 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.061 -24.666 -16.784 31.181 hybrid contribution 0.536 1.567 0.756 1.821 sum -8.525 -23.100 -16.028 29.379 Atomic orbital electron populations 1.21751 0.94489 1.02310 1.01769 1.20503 0.96226 0.90796 1.03786 1.20049 1.00906 0.97724 0.92265 1.20935 0.98652 0.92923 0.99167 1.20936 1.04388 0.96134 0.96729 1.18471 0.98088 0.84156 0.95666 1.20323 1.04390 0.95752 0.93638 1.20543 0.97860 0.91982 0.98870 1.21149 1.04110 0.90430 0.95296 1.22570 1.04137 1.00609 0.76336 1.45070 1.65595 1.11172 1.07840 1.15851 0.78520 0.81094 0.83851 1.90871 1.61395 1.78663 1.18978 1.45025 1.69654 1.10996 1.11148 1.21163 0.98661 0.87807 0.88861 1.20722 0.96689 0.92087 0.96895 1.21690 0.96045 1.01501 0.98573 1.21694 0.96508 1.01042 0.98576 1.18960 0.94281 0.93480 0.92992 1.21551 1.42499 0.97544 0.93582 0.90722 1.25981 0.96389 1.02783 0.95229 1.70126 1.50030 1.32999 1.04803 0.85566 0.79150 0.78867 0.77845 1.19071 1.21850 1.19089 0.92504 0.91105 0.93695 0.89400 0.90752 0.84899 0.87611 0.82724 0.86766 0.86793 0.88312 0.88346 0.75014 0.93661 0.93660 0.91274 0.92203 0.94491 0.94501 0.92198 0.91271 0.99593 0.99587 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.90 71.98 0.71 -0.80 16 2 C -0.08 -0.84 6.07 29.85 0.18 -0.66 16 3 C -0.11 -1.85 5.14 -19.85 -0.10 -1.95 16 4 C -0.10 -2.19 9.68 22.19 0.21 -1.98 16 5 C -0.16 -4.71 9.46 22.51 0.21 -4.50 16 6 C 0.13 3.52 6.62 38.27 0.25 3.77 16 7 C -0.14 -2.55 6.23 -19.64 -0.12 -2.67 16 8 C -0.07 -1.14 9.70 22.25 0.22 -0.93 16 9 C -0.07 -0.80 6.93 30.26 0.21 -0.59 16 10 C 0.08 1.23 6.32 86.62 0.55 1.78 16 11 N -0.57 -14.92 3.13 -646.29 -2.02 -16.94 16 12 C 0.70 23.63 8.43 179.05 1.51 25.14 16 13 O -0.62 -26.46 14.51 -3.98 -0.06 -26.52 16 14 N -0.71 -21.03 4.91 -478.53 -2.35 -23.38 16 15 C 0.16 5.90 4.56 86.38 0.39 6.29 16 16 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 17 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 18 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 19 C 0.04 2.06 4.04 29.85 0.12 2.18 16 20 C -0.51 -27.34 7.65 25.60 0.20 -27.15 16 21 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 22 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 23 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 24 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 32 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 33 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.11 3.78 6.28 -2.91 -0.02 3.76 16 35 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 9.24 5.10 -92.71 -0.47 8.76 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.07 1.70 6.86 -2.38 -0.02 1.68 16 44 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 45 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 48 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 49 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 50 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 51 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -75.05 399.97 4.46 -70.59 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.44 Total: 19.03 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 6.14 Total: -11.23 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -4.09 Total: -97.28 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.05 4.46 -70.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894858689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.170 kcal (2) G-P(sol) polarization free energy of solvation -75.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds