Wall clock time and date at job start Tue Mar 31 2020 16:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47129 * 2 1 4 4 C 1.38379 * 119.85226 * 265.00119 * 3 2 1 5 5 C 1.37939 * 120.14161 * 179.97438 * 4 3 2 6 6 C 1.39588 * 119.85289 * 359.97438 * 5 4 3 7 7 C 1.47856 * 120.14084 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99917 * 152.81017 * 7 6 5 9 9 N 1.34775 * 120.00003 * 332.80760 * 7 6 5 10 10 C 1.47018 * 125.64494 * 183.41852 * 9 7 6 11 11 C 1.54343 * 107.26481 * 178.84728 * 10 9 7 12 12 H 1.08998 * 110.51052 * 96.45129 * 11 10 9 13 13 C 1.52994 * 111.00161 * 219.59840 * 11 10 9 14 14 C 1.55150 * 103.02080 * 338.14118 * 11 10 9 15 15 H 1.09000 * 111.00682 * 277.23303 * 14 11 10 16 16 N 1.46497 * 111.04193 * 153.39085 * 14 11 10 17 17 C 1.36934 * 120.00644 * 161.33255 * 16 14 11 18 18 H 1.07998 * 119.99323 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00341 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99768 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99819 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47537 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47180 * 120.00102 * 21 19 17 24 24 H 1.48504 * 109.46931 * 239.99416 * 21 19 17 25 25 C 1.47428 * 125.64997 * 3.72424 * 9 7 6 26 26 C 1.39550 * 119.71607 * 0.02562 * 6 5 4 27 27 C 1.37976 * 119.84895 * 359.76446 * 26 6 5 28 28 C 1.50703 * 119.92909 * 180.22960 * 27 26 6 29 29 C 1.53001 * 109.47256 * 265.25717 * 28 27 26 30 30 H 1.09001 * 109.47040 * 299.99482 * 1 2 3 31 31 H 1.08999 * 109.47532 * 59.99957 * 1 2 3 32 32 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47532 * 120.00043 * 2 1 3 34 34 H 1.09001 * 109.47559 * 240.00430 * 2 1 3 35 35 H 1.07997 * 119.92923 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.07063 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.88903 * 298.39270 * 10 9 7 38 38 H 1.08999 * 109.88527 * 59.56385 * 10 9 7 39 39 H 1.09007 * 109.46724 * 173.77863 * 13 11 10 40 40 H 1.08999 * 109.47992 * 293.78051 * 13 11 10 41 41 H 1.09003 * 109.46980 * 53.78943 * 13 11 10 42 42 H 0.97010 * 119.99965 * 341.33360 * 16 14 11 43 43 H 0.96996 * 119.99671 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36224 * 322.93261 * 25 9 7 45 45 H 1.09003 * 110.36572 * 85.25382 * 25 9 7 46 46 H 1.08004 * 120.07707 * 180.02562 * 26 6 5 47 47 H 1.08997 * 109.46902 * 25.25643 * 28 27 26 48 48 H 1.08997 * 109.47090 * 145.25766 * 28 27 26 49 49 H 1.08996 * 109.47063 * 179.97438 * 29 28 27 50 50 H 1.08997 * 109.47104 * 299.99802 * 29 28 27 51 51 H 1.08997 * 109.47031 * 60.00013 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0354 -1.1956 5 6 2.8204 3.3359 -1.2026 6 6 2.9538 4.0321 -0.0002 7 6 3.4456 5.4265 -0.0003 8 8 3.1186 6.1864 0.8903 9 7 4.2565 5.8550 -0.9878 10 6 4.8726 7.1871 -1.0732 11 6 5.7364 7.2112 -2.3521 12 1 5.1839 7.6598 -3.1777 13 6 7.0497 7.9586 -2.1128 14 6 6.0023 5.7068 -2.6227 15 1 6.8360 5.3432 -2.0221 16 7 6.2395 5.4625 -4.0476 17 6 6.8584 4.3096 -4.4510 18 1 7.1713 3.5801 -3.7187 19 6 7.0835 4.0784 -5.8011 20 7 6.7017 4.9673 -6.6936 21 14 7.9285 2.5060 -6.3513 22 1 8.2563 1.6782 -5.1628 23 1 7.0231 1.7458 -7.2499 24 1 9.1783 2.8440 -7.0786 25 6 4.6676 5.0676 -2.1645 26 6 2.6211 3.4065 1.2021 27 6 2.1582 2.1068 1.1947 28 6 1.7934 1.4312 2.4915 29 6 2.9890 0.6226 2.9992 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 2.2564 1.4957 -2.1252 36 1 3.0766 3.8143 -2.1364 37 1 4.0975 7.9510 -1.1327 38 1 5.5015 7.3614 -0.2002 39 1 7.6859 7.8663 -2.9931 40 1 6.8397 9.0116 -1.9252 41 1 7.5594 7.5303 -1.2497 42 1 5.9581 6.1176 -4.7054 43 1 6.8587 4.8056 -7.6370 44 1 4.8216 4.0246 -1.8880 45 1 3.9193 5.1454 -2.9533 46 1 2.7218 3.9399 2.1358 47 1 1.5245 2.1854 3.2310 48 1 0.9469 0.7643 2.3282 49 1 2.7253 0.1344 3.9374 50 1 3.2579 -0.1316 2.2598 51 1 3.8356 1.2894 3.1626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939891762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:48 Heat of formation + Delta-G solvation = -10.253766 kcal Electronic energy + Delta-G solvation = -28716.969314 eV Core-core repulsion = 25001.786000 eV Total energy + Delta-G solvation = -3715.183314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48948 -39.20480 -37.49558 -34.87021 -34.09772 -33.57027 -32.49902 -30.79348 -30.01391 -29.33326 -27.62337 -26.37149 -24.84853 -23.99569 -23.58869 -22.05060 -21.66662 -20.63434 -19.97599 -19.25971 -17.22090 -16.85154 -16.33828 -15.93244 -15.82048 -15.36914 -14.66807 -14.47449 -14.02484 -13.95386 -13.82490 -13.73866 -13.60657 -13.41460 -13.08064 -13.02468 -12.95725 -12.73386 -12.55055 -12.41281 -12.02533 -11.94408 -11.68822 -11.56021 -11.47792 -11.27768 -11.14058 -11.05191 -10.91028 -10.79452 -10.64149 -10.52274 -10.25672 -9.95033 -9.85570 -9.69546 -9.05330 -8.84977 -8.61207 -8.34207 -7.12437 -5.89433 -3.20244 0.94063 1.37302 2.92978 3.18899 3.35898 3.42830 3.44317 3.82342 4.45303 4.53077 4.59695 4.70506 4.77630 4.83353 5.00542 5.07183 5.10870 5.12732 5.18895 5.21857 5.24592 5.36945 5.44413 5.46889 5.50735 5.59944 5.61740 5.67656 5.70632 5.75089 5.79651 5.83143 5.89378 5.92252 5.95354 5.98161 6.05417 6.13237 6.18729 6.19939 6.32609 6.37613 6.38652 6.41708 6.52324 6.57141 6.61240 6.82850 6.91983 7.60429 7.75291 8.27592 8.34716 9.40361 9.93495 10.28755 11.32489 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.003652 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.273862 B = 7664.781767 C = 9744.416132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.059 4.059 4 C -0.122 4.122 5 C -0.094 4.094 6 C -0.128 4.128 7 C 0.570 3.430 8 O -0.552 6.552 9 N -0.607 5.607 10 C 0.117 3.883 11 C -0.114 4.114 12 H 0.084 0.916 13 C -0.134 4.134 14 C 0.176 3.824 15 H 0.066 0.934 16 N -0.710 5.710 17 C -0.248 4.248 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.065 3.935 26 C -0.060 4.060 27 C -0.094 4.094 28 C -0.085 4.085 29 C -0.149 4.149 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.129 0.871 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 -5.938 15.021 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.140 4.140 5 C -0.112 4.112 6 C -0.131 4.131 7 C 0.360 3.640 8 O -0.432 6.432 9 N -0.339 5.339 10 C -0.006 4.006 11 C -0.133 4.133 12 H 0.103 0.897 13 C -0.192 4.192 14 C 0.064 3.936 15 H 0.084 0.916 16 N -0.350 5.350 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.737 3.263 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.061 4.061 26 C -0.079 4.079 27 C -0.094 4.094 28 C -0.123 4.123 29 C -0.206 4.206 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.147 0.853 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.565 -5.714 15.491 19.081 hybrid contribution 0.343 -0.612 -0.808 1.070 sum -9.222 -6.326 14.683 18.457 Atomic orbital electron populations 1.21760 0.94652 1.01683 1.02369 1.20651 0.96257 0.92728 1.03191 1.19916 0.97451 0.95976 0.92621 1.21032 1.00187 0.95055 0.97720 1.22011 0.96161 0.94571 0.98459 1.19810 1.04643 0.94062 0.94562 1.18019 0.78097 0.87118 0.80806 1.90733 1.58667 1.56672 1.37142 1.48394 1.46852 1.15631 1.23003 1.21991 0.96005 0.84199 0.98372 1.22487 0.96403 0.98104 0.96348 0.89725 1.21662 0.96331 0.98861 1.02313 1.21394 0.93246 0.90893 0.88081 0.91644 1.42301 1.70105 1.22854 0.99753 1.19274 1.30930 0.96332 0.91312 0.90937 1.24749 1.01367 0.98381 0.95844 1.69665 1.51924 1.35152 1.00833 0.86145 0.78942 0.82803 0.78444 1.20444 1.21759 1.21767 1.23858 0.99855 0.96477 0.85872 1.21009 0.95899 0.93703 0.97298 1.19613 1.01009 0.93956 0.94823 1.20574 0.98698 0.99273 0.93720 1.21776 0.98022 1.00076 1.00702 0.92444 0.92388 0.92376 0.90544 0.90818 0.85406 0.83710 0.91809 0.91556 0.91289 0.93143 0.92877 0.77822 0.93373 0.90350 0.90872 0.85317 0.91059 0.90624 0.92446 0.92394 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.71 37.16 0.36 -0.78 16 2 C -0.09 -0.79 5.37 -27.88 -0.15 -0.94 16 3 C -0.06 -0.67 5.14 -104.53 -0.54 -1.21 16 4 C -0.12 -1.53 9.66 -39.64 -0.38 -1.92 16 5 C -0.09 -1.35 7.94 -39.19 -0.31 -1.66 16 6 C -0.13 -1.97 5.70 -104.97 -0.60 -2.57 16 7 C 0.57 9.94 7.64 -12.33 -0.09 9.85 16 8 O -0.55 -10.95 16.99 5.32 0.09 -10.86 16 9 N -0.61 -10.05 3.33 -171.61 -0.57 -10.62 16 10 C 0.12 1.79 6.48 -3.06 -0.02 1.77 16 11 C -0.11 -1.77 3.15 -88.78 -0.28 -2.05 16 12 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 13 C -0.13 -1.89 9.17 37.15 0.34 -1.55 16 14 C 0.18 3.24 3.13 -65.78 -0.21 3.03 16 15 H 0.07 1.25 8.04 -51.93 -0.42 0.84 16 16 N -0.71 -16.21 5.28 -51.35 -0.27 -16.48 16 17 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.74 16 21 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.06 1.10 4.71 -2.52 -0.01 1.09 16 26 C -0.06 -0.83 9.22 -39.19 -0.36 -1.19 16 27 C -0.09 -1.09 5.13 -104.68 -0.54 -1.63 16 28 C -0.09 -0.76 5.38 -27.88 -0.15 -0.91 16 29 C -0.15 -1.21 9.72 37.16 0.36 -0.85 16 30 H 0.06 0.44 6.77 -51.93 -0.35 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.60 5.61 -51.93 -0.29 0.31 16 34 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.15 2.13 4.56 -52.48 -0.24 1.89 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.99 7.78 -51.93 -0.40 0.58 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.39 9.45 7.71 -40.82 -0.31 9.13 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.08 1.34 6.15 -51.93 -0.32 1.02 16 45 H 0.07 1.28 7.29 -51.93 -0.38 0.91 16 46 H 0.13 1.74 7.88 -52.48 -0.41 1.32 16 47 H 0.07 0.60 8.05 -51.93 -0.42 0.19 16 48 H 0.08 0.58 5.57 -51.93 -0.29 0.30 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.47 6.79 -51.93 -0.35 0.12 16 51 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -29.76 399.79 -10.22 -39.98 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.37 Total: 9.72 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.82 Total: -8.29 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.12 Total: -52.84 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.76 -10.22 -39.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939891762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.722 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds