Wall clock time and date at job start Tue Mar 31 2020 16:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47129 * 2 1 4 4 C 1.38379 * 119.85226 * 265.00119 * 3 2 1 5 5 C 1.37939 * 120.14161 * 179.97438 * 4 3 2 6 6 C 1.39588 * 119.85289 * 359.97438 * 5 4 3 7 7 C 1.47856 * 120.14084 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99917 * 152.81017 * 7 6 5 9 9 N 1.34775 * 120.00003 * 332.80760 * 7 6 5 10 10 C 1.47018 * 125.64494 * 183.41852 * 9 7 6 11 11 C 1.54343 * 107.26481 * 178.84728 * 10 9 7 12 12 H 1.08998 * 110.51052 * 96.45129 * 11 10 9 13 13 C 1.52994 * 111.00161 * 219.59840 * 11 10 9 14 14 C 1.55150 * 103.02080 * 338.14118 * 11 10 9 15 15 H 1.09000 * 111.00682 * 277.23303 * 14 11 10 16 16 N 1.46497 * 111.04193 * 153.39085 * 14 11 10 17 17 C 1.36934 * 120.00644 * 161.33255 * 16 14 11 18 18 H 1.07998 * 119.99323 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00341 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99768 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99819 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47537 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47180 * 120.00102 * 21 19 17 24 24 H 1.48504 * 109.46931 * 239.99416 * 21 19 17 25 25 C 1.47428 * 125.64997 * 3.72424 * 9 7 6 26 26 C 1.39550 * 119.71607 * 0.02562 * 6 5 4 27 27 C 1.37976 * 119.84895 * 359.76446 * 26 6 5 28 28 C 1.50703 * 119.92909 * 180.22960 * 27 26 6 29 29 C 1.53001 * 109.47256 * 265.25717 * 28 27 26 30 30 H 1.09001 * 109.47040 * 299.99482 * 1 2 3 31 31 H 1.08999 * 109.47532 * 59.99957 * 1 2 3 32 32 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47532 * 120.00043 * 2 1 3 34 34 H 1.09001 * 109.47559 * 240.00430 * 2 1 3 35 35 H 1.07997 * 119.92923 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.07063 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.88903 * 298.39270 * 10 9 7 38 38 H 1.08999 * 109.88527 * 59.56385 * 10 9 7 39 39 H 1.09007 * 109.46724 * 173.77863 * 13 11 10 40 40 H 1.08999 * 109.47992 * 293.78051 * 13 11 10 41 41 H 1.09003 * 109.46980 * 53.78943 * 13 11 10 42 42 H 0.97010 * 119.99965 * 341.33360 * 16 14 11 43 43 H 0.96996 * 119.99671 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36224 * 322.93261 * 25 9 7 45 45 H 1.09003 * 110.36572 * 85.25382 * 25 9 7 46 46 H 1.08004 * 120.07707 * 180.02562 * 26 6 5 47 47 H 1.08997 * 109.46902 * 25.25643 * 28 27 26 48 48 H 1.08997 * 109.47090 * 145.25766 * 28 27 26 49 49 H 1.08996 * 109.47063 * 179.97438 * 29 28 27 50 50 H 1.08997 * 109.47104 * 299.99802 * 29 28 27 51 51 H 1.08997 * 109.47031 * 60.00013 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0354 -1.1956 5 6 2.8204 3.3359 -1.2026 6 6 2.9538 4.0321 -0.0002 7 6 3.4456 5.4265 -0.0003 8 8 3.1186 6.1864 0.8903 9 7 4.2565 5.8550 -0.9878 10 6 4.8726 7.1871 -1.0732 11 6 5.7364 7.2112 -2.3521 12 1 5.1839 7.6598 -3.1777 13 6 7.0497 7.9586 -2.1128 14 6 6.0023 5.7068 -2.6227 15 1 6.8360 5.3432 -2.0221 16 7 6.2395 5.4625 -4.0476 17 6 6.8584 4.3096 -4.4510 18 1 7.1713 3.5801 -3.7187 19 6 7.0835 4.0784 -5.8011 20 7 6.7017 4.9673 -6.6936 21 14 7.9285 2.5060 -6.3513 22 1 8.2563 1.6782 -5.1628 23 1 7.0231 1.7458 -7.2499 24 1 9.1783 2.8440 -7.0786 25 6 4.6676 5.0676 -2.1645 26 6 2.6211 3.4065 1.2021 27 6 2.1582 2.1068 1.1947 28 6 1.7934 1.4312 2.4915 29 6 2.9890 0.6226 2.9992 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 2.2564 1.4957 -2.1252 36 1 3.0766 3.8143 -2.1364 37 1 4.0975 7.9510 -1.1327 38 1 5.5015 7.3614 -0.2002 39 1 7.6859 7.8663 -2.9931 40 1 6.8397 9.0116 -1.9252 41 1 7.5594 7.5303 -1.2497 42 1 5.9581 6.1176 -4.7054 43 1 6.8587 4.8056 -7.6370 44 1 4.8216 4.0246 -1.8880 45 1 3.9193 5.1454 -2.9533 46 1 2.7218 3.9399 2.1358 47 1 1.5245 2.1854 3.2310 48 1 0.9469 0.7643 2.3282 49 1 2.7253 0.1344 3.9374 50 1 3.2579 -0.1316 2.2598 51 1 3.8356 1.2894 3.1626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939891762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:48 Heat of formation + Delta-G solvation = -25.064486 kcal Electronic energy + Delta-G solvation = -28717.611555 eV Core-core repulsion = 25001.786000 eV Total energy + Delta-G solvation = -3715.825555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70596 -40.33483 -38.91700 -35.98183 -35.71383 -34.35751 -33.90593 -32.54251 -30.94225 -30.27246 -29.22181 -27.53868 -26.11198 -25.43139 -24.51085 -23.39315 -22.51788 -21.80058 -21.37130 -20.49832 -19.11241 -18.07549 -17.58737 -17.20898 -16.87716 -16.56273 -16.17551 -15.77106 -15.38115 -15.16307 -14.84389 -14.81070 -14.62433 -14.56034 -14.44372 -14.23978 -14.10290 -14.01169 -13.49954 -13.29813 -13.18823 -13.07148 -12.92567 -12.87633 -12.79115 -12.52411 -12.15885 -12.13287 -12.11228 -12.06435 -11.99486 -11.71283 -11.68378 -11.46171 -11.40523 -11.12539 -10.87476 -9.95472 -9.71992 -9.57442 -9.03693 -7.94103 -5.23824 -0.14449 0.35380 1.49639 1.51323 1.60031 1.66841 1.88023 2.56918 2.73523 3.28028 3.37213 3.66981 3.71851 3.77755 3.81652 3.87602 3.93732 4.12380 4.14416 4.19164 4.29959 4.40698 4.45005 4.47402 4.52608 4.52884 4.54223 4.57959 4.63840 4.76086 4.81241 4.84650 4.86328 4.99354 5.04460 5.06058 5.06315 5.09655 5.10231 5.14699 5.22686 5.30616 5.34080 5.36616 5.43317 5.45844 5.48927 5.55815 5.64279 5.94011 6.26580 6.37641 6.98057 7.35055 8.04724 8.30328 9.28743 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.003652 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.273862 B = 7664.781767 C = 9744.416132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.053 4.053 4 C -0.128 4.128 5 C -0.104 4.104 6 C -0.151 4.151 7 C 0.567 3.433 8 O -0.581 6.581 9 N -0.606 5.606 10 C 0.118 3.882 11 C -0.102 4.102 12 H 0.081 0.919 13 C -0.129 4.129 14 C 0.171 3.829 15 H 0.061 0.939 16 N -0.718 5.718 17 C -0.240 4.240 18 H 0.077 0.923 19 C -0.065 4.065 20 N -0.964 5.964 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.296 1.296 25 C 0.082 3.918 26 C -0.070 4.070 27 C -0.090 4.090 28 C -0.084 4.084 29 C -0.147 4.147 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.378 0.622 43 H 0.251 0.749 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.126 0.874 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.039 -7.820 16.579 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.053 4.053 4 C -0.146 4.146 5 C -0.122 4.122 6 C -0.154 4.154 7 C 0.358 3.642 8 O -0.464 6.464 9 N -0.338 5.338 10 C -0.005 4.005 11 C -0.122 4.122 12 H 0.100 0.900 13 C -0.186 4.186 14 C 0.060 3.940 15 H 0.079 0.921 16 N -0.357 5.357 17 C -0.372 4.372 18 H 0.095 0.905 19 C -0.258 4.258 20 N -0.614 5.614 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.224 1.224 25 C -0.044 4.044 26 C -0.089 4.089 27 C -0.091 4.091 28 C -0.121 4.121 29 C -0.204 4.204 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.144 0.856 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.132 -7.602 17.093 21.275 hybrid contribution 0.468 -0.041 -1.194 1.283 sum -9.664 -7.644 15.900 20.115 Atomic orbital electron populations 1.21755 0.93697 1.02795 1.02054 1.20738 0.96933 0.90761 1.04282 1.20279 0.95867 0.97283 0.91908 1.21265 0.99865 0.94437 0.99043 1.21940 0.97201 0.95452 0.97646 1.19770 1.06587 0.93321 0.95675 1.18386 0.77671 0.87827 0.80270 1.90702 1.59843 1.57643 1.38175 1.48410 1.46727 1.15979 1.22663 1.22059 0.96182 0.83857 0.98358 1.22399 0.97312 0.96116 0.96376 0.90034 1.21619 0.94992 1.00258 1.01740 1.21514 0.93535 0.93207 0.85711 0.92104 1.42366 1.70047 1.21955 1.01338 1.19593 1.29394 0.96839 0.91360 0.90523 1.25442 1.02973 1.01184 0.96157 1.69802 1.53979 1.36973 1.00691 0.85199 0.77455 0.79789 0.78071 1.19078 1.22128 1.22383 1.23526 0.98665 0.96321 0.85859 1.21118 0.96402 0.94747 0.96610 1.19941 0.99624 0.93110 0.96376 1.20653 0.99608 0.99611 0.92249 1.21768 0.97158 0.99775 1.01700 0.92304 0.93219 0.90577 0.89101 0.90150 0.83998 0.84737 0.91121 0.90704 0.93078 0.90691 0.92130 0.78931 0.94000 0.90411 0.91528 0.85614 0.90672 0.88858 0.90531 0.92205 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.71 71.98 0.70 -1.13 16 2 C -0.09 -1.30 5.37 29.85 0.16 -1.14 16 3 C -0.05 -1.10 5.14 -19.81 -0.10 -1.21 16 4 C -0.13 -3.10 9.66 22.23 0.21 -2.88 16 5 C -0.10 -3.00 7.94 22.52 0.18 -2.82 16 6 C -0.15 -4.69 5.70 -20.09 -0.11 -4.80 16 7 C 0.57 20.05 7.64 86.79 0.66 20.71 16 8 O -0.58 -23.34 16.99 -3.89 -0.07 -23.40 16 9 N -0.61 -20.15 3.33 -815.14 -2.71 -22.86 16 10 C 0.12 3.53 6.48 86.74 0.56 4.09 16 11 C -0.10 -3.14 3.15 -9.60 -0.03 -3.17 16 12 H 0.08 2.58 8.00 -2.39 -0.02 2.56 16 13 C -0.13 -3.48 9.17 71.98 0.66 -2.82 16 14 C 0.17 6.30 3.13 46.38 0.15 6.44 16 15 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 16 N -0.72 -33.12 5.28 -316.38 -1.67 -34.79 16 17 C -0.24 -12.35 9.98 84.03 0.84 -11.51 16 18 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 19 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 20 N -0.96 -55.92 13.06 21.65 0.28 -55.64 16 21 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 C 0.08 2.80 4.71 86.86 0.41 3.21 16 26 C -0.07 -1.91 9.22 22.52 0.21 -1.70 16 27 C -0.09 -1.96 5.13 -19.90 -0.10 -2.07 16 28 C -0.08 -1.29 5.38 29.85 0.16 -1.13 16 29 C -0.15 -2.02 9.72 71.98 0.70 -1.32 16 30 H 0.06 0.73 6.77 -2.39 -0.02 0.71 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 1.09 5.61 -2.39 -0.01 1.07 16 34 H 0.08 1.09 8.05 -2.39 -0.02 1.07 16 35 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.14 4.06 4.56 -2.91 -0.01 4.05 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.07 2.14 7.78 -2.39 -0.02 2.12 16 39 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.38 18.82 7.71 -92.70 -0.72 18.10 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.08 2.68 6.15 -2.39 -0.01 2.67 16 45 H 0.07 2.39 7.29 -2.39 -0.02 2.37 16 46 H 0.13 3.42 7.88 -2.91 -0.02 3.40 16 47 H 0.07 1.11 8.05 -2.39 -0.02 1.10 16 48 H 0.09 1.12 5.57 -2.39 -0.01 1.11 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 0.80 6.79 -2.39 -0.02 0.79 16 51 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -64.02 399.79 3.79 -60.22 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.21 Total: 36.82 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.72 Total: -6.27 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -4.10 Total: -113.29 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.07 Total: -23.40 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.02 3.79 -60.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939891762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.158 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds