Wall clock time and date at job start Tue Mar 31 2020 16:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46955 * 2 1 4 4 C 1.38245 * 119.99800 * 265.01984 * 3 2 1 5 5 C 1.38223 * 119.99984 * 179.97438 * 4 3 2 6 6 C 1.38251 * 119.99926 * 0.02562 * 5 4 3 7 7 C 1.38223 * 119.99827 * 359.70875 * 6 5 4 8 8 C 1.38213 * 119.99890 * 85.00053 * 3 2 1 9 9 C 1.50705 * 120.00161 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.47053 * 84.99788 * 9 8 3 11 11 O 1.21279 * 119.99977 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99892 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00214 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.45714 * 35.02955 * 13 12 10 15 15 C 1.53349 * 109.40637 * 275.12632 * 13 12 10 16 16 C 1.53194 * 109.14721 * 178.67880 * 15 13 12 17 17 N 1.46924 * 108.89447 * 54.57940 * 16 15 13 18 18 C 1.36930 * 120.63300 * 126.34039 * 17 16 15 19 19 H 1.07996 * 120.00049 * 331.82927 * 18 17 16 20 20 C 1.38816 * 120.00324 * 151.82723 * 18 17 16 21 21 N 1.31624 * 119.99356 * 343.06571 * 20 18 17 22 22 Si 1.86793 * 120.00395 * 163.06593 * 20 18 17 23 23 H 1.48500 * 109.46960 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47338 * 119.99948 * 22 20 18 25 25 H 1.48503 * 109.47085 * 239.99957 * 22 20 18 26 26 C 1.46929 * 118.73622 * 306.31812 * 17 16 15 27 27 C 1.53032 * 109.46159 * 155.00187 * 13 12 10 28 28 H 1.08998 * 109.52708 * 61.40814 * 27 13 12 29 29 C 1.52995 * 109.49874 * 301.32492 * 27 13 12 30 30 H 1.09006 * 109.46905 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47417 * 299.99579 * 1 2 3 32 32 H 1.08995 * 109.47173 * 60.00252 * 1 2 3 33 33 H 1.09002 * 109.47574 * 239.99665 * 2 1 3 34 34 H 1.09005 * 109.47173 * 119.99650 * 2 1 3 35 35 H 1.08000 * 120.00429 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.99919 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.00063 * 179.97438 * 6 5 4 38 38 H 1.08003 * 119.99947 * 180.29394 * 7 6 5 39 39 H 1.08998 * 109.46996 * 325.00340 * 9 8 3 40 40 H 1.08994 * 109.47302 * 205.00144 * 9 8 3 41 41 H 0.97004 * 120.00207 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.68685 * 58.71561 * 15 13 12 43 43 H 1.08997 * 109.47481 * 298.51451 * 15 13 12 44 44 H 1.08999 * 109.58554 * 294.71486 * 16 15 13 45 45 H 1.09001 * 109.58356 * 174.43691 * 16 15 13 46 46 H 0.96997 * 119.99488 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.58736 * 173.39352 * 26 17 16 48 48 H 1.09002 * 109.58596 * 293.82293 * 26 17 16 49 49 H 1.08997 * 109.47505 * 300.16038 * 29 27 13 50 50 H 1.09002 * 109.47293 * 60.16748 * 29 27 13 51 51 H 1.09008 * 109.46826 * 180.15779 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3607 2.0379 -1.1927 5 6 2.8209 3.3413 -1.1928 6 6 2.9533 4.0277 -0.0001 7 6 2.6197 3.4125 1.1920 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9861 0.6378 2.9874 11 8 4.0161 0.6186 2.3474 12 7 2.8968 -0.0524 4.1415 13 6 4.0438 -0.8265 4.6228 14 1 4.9665 -0.3058 4.3665 15 6 4.0383 -2.2101 3.9616 16 6 5.2578 -3.0022 4.4436 17 7 5.2546 -3.0335 5.9125 18 6 5.3292 -4.2238 6.5851 19 1 4.9468 -5.1258 6.1307 20 6 5.8966 -4.2713 7.8512 21 7 6.6517 -3.2786 8.2715 22 14 5.5883 -5.7439 8.9582 23 1 4.7120 -6.7159 8.2564 24 1 6.8820 -6.3930 9.2903 25 1 4.9254 -5.2933 10.2083 26 6 5.1702 -1.7631 6.6460 27 6 3.9518 -0.9830 6.1423 28 1 3.0415 -1.5251 6.3983 29 6 3.9242 0.3994 6.7973 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2568 1.5019 -2.1246 36 1 3.0770 3.8234 -2.1246 37 1 3.3132 5.0459 -0.0001 38 1 2.7187 3.9503 2.1233 39 1 0.9583 0.7681 2.3356 40 1 1.5426 2.1903 3.2322 41 1 2.0730 -0.0368 4.6535 42 1 4.0814 -2.0995 2.8781 43 1 3.1273 -2.7411 4.2376 44 1 6.1694 -2.5202 4.0903 45 1 5.2088 -4.0199 4.0563 46 1 7.0484 -3.3119 9.1560 47 1 5.0609 -1.9632 7.7119 48 1 6.0747 -1.1802 6.4723 49 1 4.8341 0.9416 6.5402 50 1 3.0571 0.9541 6.4387 51 1 3.8615 0.2874 7.8798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942175662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:44 Heat of formation + Delta-G solvation = -12.486772 kcal Electronic energy + Delta-G solvation = -28906.556073 eV Core-core repulsion = 25191.275929 eV Total energy + Delta-G solvation = -3715.280144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.34503 -39.14553 -37.49766 -34.50808 -34.40330 -32.78399 -32.15506 -31.82825 -29.73562 -29.42274 -27.65007 -25.91973 -24.91027 -23.97997 -22.59406 -21.87721 -20.89559 -20.72658 -20.04832 -19.17042 -17.12321 -16.58457 -16.51453 -16.21236 -15.78665 -15.11818 -14.78764 -14.55072 -14.06935 -13.87697 -13.79945 -13.66493 -13.52666 -13.27440 -13.16472 -12.97744 -12.88800 -12.53539 -12.25493 -12.14393 -11.93145 -11.91950 -11.45881 -11.43729 -11.29635 -11.08823 -10.93126 -10.81095 -10.74362 -10.65905 -10.32640 -10.17146 -9.99410 -9.85815 -9.66215 -9.44222 -8.86607 -8.66397 -8.64937 -8.45631 -6.68460 -5.80130 -3.22391 1.25309 1.32761 2.83213 3.34488 3.37520 3.44150 3.46335 3.78628 4.48570 4.50434 4.61735 4.77868 4.83567 4.99637 5.01164 5.09271 5.19622 5.25363 5.27150 5.33496 5.37558 5.44048 5.46136 5.51126 5.59057 5.68882 5.73360 5.76924 5.88976 5.89698 5.99653 6.08670 6.09491 6.14888 6.25885 6.36229 6.38918 6.41811 6.48253 6.51766 6.57386 6.60254 6.69683 6.79762 6.92678 6.97792 7.00004 7.33336 7.61212 7.76104 7.80740 8.43917 8.46336 9.20217 9.83354 10.40612 11.28644 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.002585 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.893738 B =10830.463486 C =11281.224748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.059 4.059 9 C -0.109 4.109 10 C 0.511 3.489 11 O -0.532 6.532 12 N -0.724 5.724 13 C 0.158 3.842 14 H 0.080 0.920 15 C -0.139 4.139 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.181 3.819 27 C -0.122 4.122 28 H 0.067 0.933 29 C -0.138 4.138 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.394 0.606 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.019 0.981 45 H 0.055 0.945 46 H 0.253 0.747 47 H 0.091 0.909 48 H 0.020 0.980 49 H 0.050 0.950 50 H 0.042 0.958 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 13.133 -14.030 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.124 4.124 8 C -0.059 4.059 9 C -0.149 4.149 10 C 0.296 3.704 11 O -0.408 6.408 12 N -0.374 5.374 13 C 0.054 3.946 14 H 0.098 0.902 15 C -0.179 4.179 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.055 3.945 27 C -0.143 4.143 28 H 0.085 0.915 29 C -0.196 4.196 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.228 0.772 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.038 0.962 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.017 13.094 -14.333 23.374 hybrid contribution -0.422 -0.633 0.898 1.177 sum -13.439 12.462 -13.435 22.724 Atomic orbital electron populations 1.21769 0.94753 1.01834 1.02019 1.20575 0.95867 0.92884 1.03338 1.19665 0.98313 0.95697 0.92616 1.20969 1.00217 0.95182 0.97329 1.21084 0.99918 0.94848 0.97969 1.21047 1.00769 0.99947 0.92580 1.20971 0.98738 0.94503 0.98138 1.19117 0.99772 0.93893 0.93141 1.20783 0.98025 1.00160 0.95921 1.20390 0.89258 0.79638 0.81097 1.90730 1.30935 1.63050 1.56059 1.46324 1.17362 1.50039 1.23697 1.21096 0.88344 0.91177 0.93954 0.90157 1.22428 1.00917 0.95689 0.98879 1.20872 0.93696 0.97509 0.85919 1.44101 1.85161 1.03065 0.99201 1.19226 1.32501 0.87312 0.99040 0.91626 1.25059 0.97045 0.97692 0.99894 1.70040 1.32891 1.32726 1.19024 0.86234 0.77568 0.82306 0.80740 1.20271 1.21722 1.21579 1.20798 0.90871 0.84717 0.98139 1.22152 1.03083 0.96447 0.92603 0.91473 1.21721 1.00711 0.96676 1.00532 0.92242 0.92571 0.92557 0.90991 0.90826 0.86295 0.86339 0.86278 0.86298 0.88007 0.88338 0.77209 0.92732 0.92395 0.96259 0.92640 0.93666 0.89057 0.96191 0.93061 0.93887 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.72 37.16 0.36 -0.80 16 2 C -0.09 -0.91 5.38 -27.88 -0.15 -1.06 16 3 C -0.06 -0.72 5.13 -104.63 -0.54 -1.26 16 4 C -0.12 -1.26 9.68 -39.58 -0.38 -1.65 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 6 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.11 -1.17 9.68 -39.58 -0.38 -1.56 16 8 C -0.06 -0.69 4.37 -104.62 -0.46 -1.14 16 9 C -0.11 -1.11 5.16 -29.03 -0.15 -1.26 16 10 C 0.51 7.17 6.99 -10.99 -0.08 7.09 16 11 O -0.53 -9.81 15.70 5.56 0.09 -9.72 16 12 N -0.72 -9.75 4.37 -53.61 -0.23 -9.98 16 13 C 0.16 2.71 1.88 -67.73 -0.13 2.58 16 14 H 0.08 1.60 7.58 -51.92 -0.39 1.20 16 15 C -0.14 -2.53 5.68 -26.45 -0.15 -2.68 16 16 C 0.15 3.18 6.50 -3.71 -0.02 3.16 16 17 N -0.59 -14.77 2.99 -172.32 -0.52 -15.29 16 18 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -25.96 11.20 55.49 0.62 -25.33 16 22 Si 0.90 21.48 29.59 -169.99 -5.03 16.46 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.18 4.21 4.59 -3.71 -0.02 4.20 16 27 C -0.12 -2.19 2.46 -90.50 -0.22 -2.41 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 C -0.14 -2.11 9.02 37.16 0.34 -1.78 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.07 0.86 6.42 -51.93 -0.33 0.53 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.10 0.86 5.62 -51.93 -0.29 0.57 16 40 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.39 4.22 8.31 -40.82 -0.34 3.88 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.04 0.54 7.37 -51.93 -0.38 0.16 16 51 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -32.01 399.91 -10.75 -42.76 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.70 Total: 3.97 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.01 Total: -8.88 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.13 Total: -50.60 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.01 -10.75 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942175662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.274 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds