Wall clock time and date at job start Tue Mar 31 2020 16:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46955 * 2 1 4 4 C 1.38245 * 119.99800 * 265.01984 * 3 2 1 5 5 C 1.38223 * 119.99984 * 179.97438 * 4 3 2 6 6 C 1.38251 * 119.99926 * 0.02562 * 5 4 3 7 7 C 1.38223 * 119.99827 * 359.70875 * 6 5 4 8 8 C 1.38213 * 119.99890 * 85.00053 * 3 2 1 9 9 C 1.50705 * 120.00161 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.47053 * 84.99788 * 9 8 3 11 11 O 1.21279 * 119.99977 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99892 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00214 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.45714 * 35.02955 * 13 12 10 15 15 C 1.53349 * 109.40637 * 275.12632 * 13 12 10 16 16 C 1.53194 * 109.14721 * 178.67880 * 15 13 12 17 17 N 1.46924 * 108.89447 * 54.57940 * 16 15 13 18 18 C 1.36930 * 120.63300 * 126.34039 * 17 16 15 19 19 H 1.07996 * 120.00049 * 331.82927 * 18 17 16 20 20 C 1.38816 * 120.00324 * 151.82723 * 18 17 16 21 21 N 1.31624 * 119.99356 * 343.06571 * 20 18 17 22 22 Si 1.86793 * 120.00395 * 163.06593 * 20 18 17 23 23 H 1.48500 * 109.46960 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47338 * 119.99948 * 22 20 18 25 25 H 1.48503 * 109.47085 * 239.99957 * 22 20 18 26 26 C 1.46929 * 118.73622 * 306.31812 * 17 16 15 27 27 C 1.53032 * 109.46159 * 155.00187 * 13 12 10 28 28 H 1.08998 * 109.52708 * 61.40814 * 27 13 12 29 29 C 1.52995 * 109.49874 * 301.32492 * 27 13 12 30 30 H 1.09006 * 109.46905 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47417 * 299.99579 * 1 2 3 32 32 H 1.08995 * 109.47173 * 60.00252 * 1 2 3 33 33 H 1.09002 * 109.47574 * 239.99665 * 2 1 3 34 34 H 1.09005 * 109.47173 * 119.99650 * 2 1 3 35 35 H 1.08000 * 120.00429 * 0.02562 * 4 3 2 36 36 H 1.07997 * 119.99919 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.00063 * 179.97438 * 6 5 4 38 38 H 1.08003 * 119.99947 * 180.29394 * 7 6 5 39 39 H 1.08998 * 109.46996 * 325.00340 * 9 8 3 40 40 H 1.08994 * 109.47302 * 205.00144 * 9 8 3 41 41 H 0.97004 * 120.00207 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.68685 * 58.71561 * 15 13 12 43 43 H 1.08997 * 109.47481 * 298.51451 * 15 13 12 44 44 H 1.08999 * 109.58554 * 294.71486 * 16 15 13 45 45 H 1.09001 * 109.58356 * 174.43691 * 16 15 13 46 46 H 0.96997 * 119.99488 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.58736 * 173.39352 * 26 17 16 48 48 H 1.09002 * 109.58596 * 293.82293 * 26 17 16 49 49 H 1.08997 * 109.47505 * 300.16038 * 29 27 13 50 50 H 1.09002 * 109.47293 * 60.16748 * 29 27 13 51 51 H 1.09008 * 109.46826 * 180.15779 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3607 2.0379 -1.1927 5 6 2.8209 3.3413 -1.1928 6 6 2.9533 4.0277 -0.0001 7 6 2.6197 3.4125 1.1920 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9861 0.6378 2.9874 11 8 4.0161 0.6186 2.3474 12 7 2.8968 -0.0524 4.1415 13 6 4.0438 -0.8265 4.6228 14 1 4.9665 -0.3058 4.3665 15 6 4.0383 -2.2101 3.9616 16 6 5.2578 -3.0022 4.4436 17 7 5.2546 -3.0335 5.9125 18 6 5.3292 -4.2238 6.5851 19 1 4.9468 -5.1258 6.1307 20 6 5.8966 -4.2713 7.8512 21 7 6.6517 -3.2786 8.2715 22 14 5.5883 -5.7439 8.9582 23 1 4.7120 -6.7159 8.2564 24 1 6.8820 -6.3930 9.2903 25 1 4.9254 -5.2933 10.2083 26 6 5.1702 -1.7631 6.6460 27 6 3.9518 -0.9830 6.1423 28 1 3.0415 -1.5251 6.3983 29 6 3.9242 0.3994 6.7973 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2568 1.5019 -2.1246 36 1 3.0770 3.8234 -2.1246 37 1 3.3132 5.0459 -0.0001 38 1 2.7187 3.9503 2.1233 39 1 0.9583 0.7681 2.3356 40 1 1.5426 2.1903 3.2322 41 1 2.0730 -0.0368 4.6535 42 1 4.0814 -2.0995 2.8781 43 1 3.1273 -2.7411 4.2376 44 1 6.1694 -2.5202 4.0903 45 1 5.2088 -4.0199 4.0563 46 1 7.0484 -3.3119 9.1560 47 1 5.0609 -1.9632 7.7119 48 1 6.0747 -1.1802 6.4723 49 1 4.8341 0.9416 6.5402 50 1 3.0571 0.9541 6.4387 51 1 3.8615 0.2874 7.8798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942175662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:43 Heat of formation + Delta-G solvation = -29.641090 kcal Electronic energy + Delta-G solvation = -28907.299940 eV Core-core repulsion = 25191.275929 eV Total energy + Delta-G solvation = -3716.024011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37458 -40.23074 -38.96691 -36.11090 -35.18121 -34.03417 -33.51622 -33.34982 -31.23488 -30.34007 -28.63055 -27.55699 -26.61472 -24.73526 -24.04307 -22.88777 -22.50459 -21.68330 -21.24209 -20.63122 -18.85022 -17.86538 -17.52966 -17.08623 -16.97225 -16.65399 -15.90595 -15.72969 -15.57153 -15.45596 -15.00593 -14.69881 -14.61626 -14.54754 -14.31845 -14.27802 -13.89695 -13.81428 -13.53855 -13.20809 -12.98614 -12.94574 -12.87557 -12.77842 -12.62908 -12.56953 -12.44192 -12.14051 -12.00637 -11.83903 -11.74099 -11.67666 -11.54946 -11.51794 -11.25605 -10.82393 -10.57684 -9.93037 -9.65971 -9.44492 -8.71668 -7.88647 -5.34870 0.46052 0.54578 1.46746 1.48609 1.59464 1.73995 2.27518 2.50853 2.94190 3.26729 3.62216 3.70074 3.78413 3.88215 3.99352 4.04716 4.12704 4.15415 4.21513 4.32229 4.34907 4.37933 4.51604 4.56228 4.57066 4.66279 4.70650 4.74236 4.75642 4.78157 4.85177 4.93759 5.00092 5.05107 5.08090 5.10499 5.16357 5.20480 5.26254 5.30343 5.34465 5.41604 5.50206 5.60464 5.62598 5.65481 5.65737 5.73104 5.78399 6.17907 6.37952 6.68892 7.13324 7.38404 7.82542 8.35920 9.18330 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.002585 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.893738 B =10830.463486 C =11281.224748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.079 4.079 9 C -0.099 4.099 10 C 0.513 3.487 11 O -0.579 6.579 12 N -0.710 5.710 13 C 0.171 3.829 14 H 0.050 0.950 15 C -0.123 4.123 16 C 0.144 3.856 17 N -0.610 5.610 18 C -0.263 4.263 19 H 0.067 0.933 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.188 3.812 27 C -0.107 4.107 28 H 0.076 0.924 29 C -0.132 4.132 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.413 0.587 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.002 0.998 45 H 0.056 0.944 46 H 0.251 0.749 47 H 0.062 0.938 48 H -0.012 1.012 49 H 0.039 0.961 50 H 0.079 0.921 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.611 13.813 -14.509 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.079 4.079 9 C -0.138 4.138 10 C 0.300 3.700 11 O -0.458 6.458 12 N -0.362 5.362 13 C 0.066 3.934 14 H 0.069 0.931 15 C -0.164 4.164 16 C 0.018 3.982 17 N -0.333 5.333 18 C -0.393 4.393 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.190 1.190 24 H -0.222 1.222 25 H -0.213 1.213 26 C 0.062 3.938 27 C -0.128 4.128 28 H 0.094 0.906 29 C -0.190 4.190 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.250 0.750 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.020 0.980 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.006 0.994 49 H 0.059 0.941 50 H 0.097 0.903 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.805 13.787 -14.822 25.682 hybrid contribution 0.515 -0.824 0.948 1.358 sum -15.290 12.963 -13.874 24.379 Atomic orbital electron populations 1.21737 0.92956 1.02526 1.02607 1.20564 0.97399 0.92124 1.02425 1.19928 0.98615 0.96268 0.93060 1.21254 1.00310 0.95747 0.97828 1.21413 0.99285 0.94795 0.98942 1.21373 1.00553 1.00974 0.92522 1.21263 0.98769 0.94740 0.99058 1.19347 1.00492 0.94352 0.93724 1.20789 0.96448 1.00565 0.95976 1.21060 0.89663 0.78994 0.80245 1.90720 1.33143 1.64586 1.57351 1.46035 1.16881 1.49322 1.23944 1.20633 0.88773 0.90724 0.93266 0.93126 1.22220 0.99328 0.95841 0.98961 1.20957 0.94725 0.98136 0.84417 1.44371 1.85420 1.03020 1.00452 1.19545 1.32039 0.88231 0.99488 0.91505 1.25831 0.97027 1.00450 1.01209 1.70201 1.34061 1.34695 1.19152 0.85189 0.77153 0.79247 0.78733 1.19035 1.22156 1.21326 1.20606 0.92062 0.84477 0.96634 1.21881 1.00394 0.97331 0.93161 0.90599 1.21675 1.01833 0.95020 1.00445 0.91465 0.91844 0.92109 0.91139 0.92483 0.84984 0.84262 0.84406 0.85128 0.85861 0.85419 0.74966 0.92329 0.91339 0.97993 0.92514 0.94027 0.91955 0.99381 0.94137 0.90253 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.72 71.98 0.70 -1.23 16 2 C -0.09 -1.67 5.38 29.85 0.16 -1.51 16 3 C -0.08 -1.70 5.13 -19.87 -0.10 -1.80 16 4 C -0.13 -2.68 9.68 22.27 0.22 -2.46 16 5 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.14 -2.59 10.05 22.27 0.22 -2.37 16 7 C -0.12 -2.48 9.68 22.27 0.22 -2.27 16 8 C -0.08 -1.70 4.37 -19.87 -0.09 -1.78 16 9 C -0.10 -1.74 5.16 29.10 0.15 -1.59 16 10 C 0.51 13.48 6.99 87.66 0.61 14.09 16 11 O -0.58 -21.17 15.70 -3.03 -0.05 -21.22 16 12 N -0.71 -17.48 4.37 -441.92 -1.93 -19.41 16 13 C 0.17 5.77 1.88 45.12 0.08 5.85 16 14 H 0.05 2.05 7.58 -2.38 -0.02 2.03 16 15 C -0.12 -4.43 5.68 30.78 0.17 -4.26 16 16 C 0.14 6.36 6.50 86.36 0.56 6.92 16 17 N -0.61 -31.09 2.99 -699.08 -2.09 -33.18 16 18 C -0.26 -14.51 9.58 84.04 0.81 -13.71 16 19 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 20 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 21 N -0.94 -55.38 11.20 21.65 0.24 -55.13 16 22 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 26 C 0.19 9.04 4.59 86.36 0.40 9.44 16 27 C -0.11 -3.77 2.46 -10.72 -0.03 -3.79 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 C -0.13 -3.82 9.02 71.98 0.65 -3.17 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.77 6.80 -2.39 -0.02 0.75 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 1.31 8.05 -2.39 -0.02 1.29 16 34 H 0.06 1.26 6.42 -2.38 -0.02 1.25 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.12 1.65 5.62 -2.39 -0.01 1.64 16 40 H 0.13 1.52 8.05 -2.39 -0.02 1.50 16 41 H 0.41 7.27 8.31 -92.70 -0.77 6.50 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 46 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 47 H 0.06 3.35 6.06 -2.39 -0.01 3.33 16 48 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 49 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 1.73 7.37 -2.39 -0.02 1.71 16 51 H 0.06 1.62 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -71.92 399.91 3.71 -68.21 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.14 Total: 22.28 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.38 Total: -8.13 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.78 Total: -107.73 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.92 3.71 -68.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942175662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.565 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds