Wall clock time and date at job start Tue Mar 31 2020 16:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47145 * 2 1 4 4 C 1.38250 * 120.00045 * 265.01909 * 3 2 1 5 5 C 1.38213 * 120.00297 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99759 * 0.02763 * 5 4 3 7 7 C 1.38211 * 119.99750 * 359.69621 * 6 5 4 8 8 C 1.38215 * 120.00207 * 84.99716 * 3 2 1 9 9 C 1.50704 * 119.99756 * 0.02562 * 8 3 2 10 10 C 1.50706 * 109.46752 * 84.99930 * 9 8 3 11 11 O 1.21278 * 120.00243 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99582 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99718 * 179.72732 * 12 10 9 14 14 H 1.09007 * 109.46193 * 35.27667 * 13 12 10 15 15 C 1.53043 * 109.46180 * 275.30541 * 13 12 10 16 16 C 1.53166 * 109.32496 * 301.35842 * 15 13 12 17 17 N 1.46920 * 108.77068 * 305.35401 * 16 15 13 18 18 C 1.36940 * 120.63092 * 233.59069 * 17 16 15 19 19 H 1.07993 * 119.99874 * 27.68957 * 18 17 16 20 20 C 1.38811 * 119.99655 * 207.68699 * 18 17 16 21 21 N 1.31624 * 120.00417 * 17.37050 * 20 18 17 22 22 Si 1.86803 * 119.99974 * 197.36303 * 20 18 17 23 23 H 1.48500 * 109.47059 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47081 * 120.00221 * 22 20 18 25 25 H 1.48500 * 109.47193 * 240.00412 * 22 20 18 26 26 C 1.46926 * 118.73837 * 53.60808 * 17 16 15 27 27 C 1.53041 * 109.46273 * 155.25063 * 13 12 10 28 28 H 1.08996 * 109.50174 * 178.60482 * 27 13 12 29 29 C 1.52998 * 109.49696 * 298.67366 * 27 13 12 30 30 H 1.09001 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47459 * 300.00075 * 1 2 3 32 32 H 1.09007 * 109.46811 * 60.00274 * 1 2 3 33 33 H 1.08994 * 109.47095 * 239.99742 * 2 1 3 34 34 H 1.09007 * 109.46811 * 119.99726 * 2 1 3 35 35 H 1.08003 * 119.99674 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00451 * 179.97438 * 5 4 3 37 37 H 1.08001 * 119.99629 * 179.97438 * 6 5 4 38 38 H 1.07997 * 119.99813 * 180.29719 * 7 6 5 39 39 H 1.08995 * 109.47275 * 325.00326 * 9 8 3 40 40 H 1.08997 * 109.47094 * 204.99639 * 9 8 3 41 41 H 0.96994 * 120.00490 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.49885 * 61.29629 * 15 13 12 43 43 H 1.08995 * 109.49911 * 181.39289 * 15 13 12 44 44 H 1.09000 * 109.58803 * 185.56722 * 16 15 13 45 45 H 1.09005 * 109.70996 * 65.21354 * 16 15 13 46 46 H 0.96993 * 120.00012 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58957 * 186.60740 * 26 17 16 48 48 H 1.08998 * 109.58651 * 66.18416 * 26 17 16 49 49 H 1.08996 * 109.47148 * 59.99680 * 29 27 13 50 50 H 1.08996 * 109.47168 * 179.97438 * 29 27 13 51 51 H 1.09003 * 109.47005 * 299.99449 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1929 6 6 2.9535 4.0276 0.0000 7 6 2.6197 3.4126 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9861 0.6379 2.9874 11 8 4.0162 0.6186 2.3475 12 7 2.8967 -0.0524 4.1415 13 6 4.0415 -0.8316 4.6194 14 1 4.9657 -0.3128 4.3648 15 6 4.0319 -2.2110 3.9565 16 6 2.7171 -2.9235 4.2878 17 7 2.5511 -2.9546 5.7473 18 6 2.3232 -4.1375 6.3985 19 1 2.6889 -5.0634 5.9800 20 6 1.6223 -4.1463 7.5966 21 7 0.8901 -3.1073 7.9385 22 14 1.7181 -5.6328 8.7239 23 1 2.6017 -6.6595 8.1152 24 1 2.2708 -5.2217 10.0394 25 1 0.3583 -6.1988 8.9133 26 6 2.6337 -1.6924 6.4948 27 6 3.9496 -0.9936 6.1385 28 1 4.7877 -1.5942 6.4917 29 6 3.9930 0.3841 6.8024 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2569 1.5018 -2.1246 36 1 3.0780 3.8231 -2.1246 37 1 3.3135 5.0458 -0.0001 38 1 2.7186 3.9503 2.1232 39 1 0.9582 0.7682 2.3355 40 1 1.5426 2.1905 3.2322 41 1 2.0731 -0.0368 4.6535 42 1 4.1208 -2.0961 2.8762 43 1 4.8692 -2.8001 4.3303 44 1 2.7462 -3.9423 3.9015 45 1 1.8835 -2.3853 3.8366 46 1 0.4001 -3.1137 8.7755 47 1 2.6078 -1.8989 7.5647 48 1 1.7946 -1.0517 6.2238 49 1 3.1540 0.9840 6.4498 50 1 3.9271 0.2684 7.8842 51 1 4.9284 0.8816 6.5463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942175663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:47 Heat of formation + Delta-G solvation = -10.529048 kcal Electronic energy + Delta-G solvation = -29438.938434 eV Core-core repulsion = 25723.743183 eV Total energy + Delta-G solvation = -3715.195251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30365 -39.20537 -37.48036 -34.35263 -34.17529 -32.68677 -32.07209 -31.77537 -29.73793 -29.44776 -27.54931 -25.89761 -25.14869 -23.88789 -22.51238 -21.90887 -21.05935 -20.81071 -20.00274 -18.54095 -17.10148 -16.72072 -16.41936 -16.12396 -15.37685 -14.99187 -14.78819 -14.60296 -14.00883 -13.86389 -13.76522 -13.63821 -13.45160 -13.28650 -13.13183 -13.02410 -12.93849 -12.59469 -12.16112 -12.04825 -11.87010 -11.81458 -11.45129 -11.33359 -11.22647 -11.03911 -10.94600 -10.82703 -10.73919 -10.70733 -10.36719 -10.14971 -9.96737 -9.79676 -9.56416 -9.43304 -8.79918 -8.60954 -8.57567 -8.47206 -6.71451 -5.84164 -3.25511 1.32872 1.39643 2.94197 3.33943 3.42644 3.44720 3.48298 3.88258 4.46043 4.61740 4.71097 4.87573 4.93103 5.09742 5.11714 5.19955 5.28262 5.31325 5.36123 5.39674 5.43213 5.47537 5.55644 5.58109 5.60831 5.67402 5.83765 5.85255 5.91720 5.99059 6.07045 6.09542 6.15751 6.21115 6.21599 6.33830 6.45810 6.46105 6.47766 6.54728 6.56007 6.65526 6.66404 6.78057 6.92270 6.99924 7.04522 7.26739 7.56296 7.76038 7.91091 8.40026 8.57260 9.16507 9.79837 10.36074 11.24225 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.002998 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.274179 B = 9337.382164 C = 9955.392336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.056 4.056 9 C -0.111 4.111 10 C 0.514 3.486 11 O -0.541 6.541 12 N -0.713 5.713 13 C 0.161 3.839 14 H 0.071 0.929 15 C -0.145 4.145 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.179 3.821 27 C -0.128 4.128 28 H 0.077 0.923 29 C -0.138 4.138 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.402 0.598 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.016 0.984 46 H 0.253 0.747 47 H 0.090 0.910 48 H 0.015 0.985 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 12.638 -13.057 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.140 4.140 6 C -0.145 4.145 7 C -0.124 4.124 8 C -0.056 4.056 9 C -0.150 4.150 10 C 0.299 3.701 11 O -0.419 6.419 12 N -0.365 5.365 13 C 0.057 3.943 14 H 0.089 0.911 15 C -0.185 4.185 16 C 0.023 3.977 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.053 3.947 27 C -0.149 4.149 28 H 0.095 0.905 29 C -0.196 4.196 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.239 0.761 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.108 0.892 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.599 12.598 -13.354 18.428 hybrid contribution -0.343 -0.686 0.919 1.197 sum 1.256 11.912 -12.434 17.265 Atomic orbital electron populations 1.21770 0.94655 1.02014 1.01988 1.20577 0.95995 0.92768 1.03314 1.19692 0.98115 0.95785 0.92581 1.20962 1.00291 0.95175 0.97318 1.21065 1.00127 0.94864 0.97903 1.21030 1.00969 0.99867 0.92600 1.20962 0.98822 0.94514 0.98098 1.19136 0.99452 0.93840 0.93206 1.20782 0.98188 1.00268 0.95805 1.20345 0.89135 0.79588 0.80994 1.90689 1.31046 1.63811 1.56322 1.46185 1.17688 1.48961 1.23644 1.20854 0.88269 0.91119 0.94062 0.91090 1.22368 1.00828 0.96101 0.99225 1.20838 0.93067 0.97644 0.86188 1.44066 1.83191 1.04230 0.99959 1.19226 1.28452 0.86248 1.04046 0.91674 1.25008 0.96678 0.97467 1.00459 1.70021 1.30606 1.30542 1.23588 0.86250 0.77343 0.82456 0.80896 1.20282 1.21573 1.21760 1.20781 0.89557 0.85421 0.98945 1.22129 1.03310 0.96620 0.92804 0.90504 1.21710 1.00581 0.96750 1.00558 0.92106 0.92452 0.92668 0.91100 0.90700 0.86342 0.86426 0.86368 0.86331 0.87798 0.88295 0.76146 0.92656 0.91578 0.93052 0.96564 0.93709 0.89163 0.96678 0.93192 0.92666 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.72 37.16 0.36 -1.08 16 2 C -0.09 -1.03 5.38 -27.88 -0.15 -1.18 16 3 C -0.06 -0.77 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.35 9.68 -39.59 -0.38 -1.73 16 5 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 7 C -0.11 -1.25 9.68 -39.59 -0.38 -1.64 16 8 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 9 C -0.11 -1.32 5.16 -29.03 -0.15 -1.47 16 10 C 0.51 7.81 6.99 -10.98 -0.08 7.73 16 11 O -0.54 -10.05 15.70 5.56 0.09 -9.97 16 12 N -0.71 -10.95 3.60 -53.76 -0.19 -11.14 16 13 C 0.16 2.74 2.21 -67.89 -0.15 2.59 16 14 H 0.07 1.25 7.58 -51.92 -0.39 0.86 16 15 C -0.15 -2.62 5.77 -26.62 -0.15 -2.77 16 16 C 0.15 3.04 6.25 -3.73 -0.02 3.02 16 17 N -0.59 -14.02 2.99 -172.34 -0.52 -14.53 16 18 C -0.25 -6.63 9.59 -15.06 -0.14 -6.77 16 19 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -25.01 11.19 55.49 0.62 -24.39 16 22 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.18 3.89 4.30 -3.71 -0.02 3.88 16 27 C -0.13 -2.27 2.67 -90.50 -0.24 -2.51 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 29 C -0.14 -2.10 9.05 37.16 0.34 -1.76 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.55 6.80 -51.93 -0.35 0.20 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.07 0.99 6.42 -51.93 -0.33 0.66 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.10 1.14 5.62 -51.93 -0.29 0.85 16 40 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 41 H 0.40 6.06 6.73 -40.82 -0.27 5.78 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 46 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 47 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 48 H 0.02 0.34 6.64 -51.93 -0.34 -0.01 16 49 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -30.23 395.93 -10.66 -40.89 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.55 Total: 6.66 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.05 Total: -9.64 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.09 Total: -50.06 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.23 -10.66 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942175663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.360 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds