Wall clock time and date at job start Tue Mar 31 2020 16:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47145 * 2 1 4 4 C 1.38250 * 120.00045 * 265.01909 * 3 2 1 5 5 C 1.38213 * 120.00297 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99759 * 0.02763 * 5 4 3 7 7 C 1.38211 * 119.99750 * 359.69621 * 6 5 4 8 8 C 1.38215 * 120.00207 * 84.99716 * 3 2 1 9 9 C 1.50704 * 119.99756 * 0.02562 * 8 3 2 10 10 C 1.50706 * 109.46752 * 84.99930 * 9 8 3 11 11 O 1.21278 * 120.00243 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99582 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99718 * 179.72732 * 12 10 9 14 14 H 1.09007 * 109.46193 * 35.27667 * 13 12 10 15 15 C 1.53043 * 109.46180 * 275.30541 * 13 12 10 16 16 C 1.53166 * 109.32496 * 301.35842 * 15 13 12 17 17 N 1.46920 * 108.77068 * 305.35401 * 16 15 13 18 18 C 1.36940 * 120.63092 * 233.59069 * 17 16 15 19 19 H 1.07993 * 119.99874 * 27.68957 * 18 17 16 20 20 C 1.38811 * 119.99655 * 207.68699 * 18 17 16 21 21 N 1.31624 * 120.00417 * 17.37050 * 20 18 17 22 22 Si 1.86803 * 119.99974 * 197.36303 * 20 18 17 23 23 H 1.48500 * 109.47059 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47081 * 120.00221 * 22 20 18 25 25 H 1.48500 * 109.47193 * 240.00412 * 22 20 18 26 26 C 1.46926 * 118.73837 * 53.60808 * 17 16 15 27 27 C 1.53041 * 109.46273 * 155.25063 * 13 12 10 28 28 H 1.08996 * 109.50174 * 178.60482 * 27 13 12 29 29 C 1.52998 * 109.49696 * 298.67366 * 27 13 12 30 30 H 1.09001 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47459 * 300.00075 * 1 2 3 32 32 H 1.09007 * 109.46811 * 60.00274 * 1 2 3 33 33 H 1.08994 * 109.47095 * 239.99742 * 2 1 3 34 34 H 1.09007 * 109.46811 * 119.99726 * 2 1 3 35 35 H 1.08003 * 119.99674 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00451 * 179.97438 * 5 4 3 37 37 H 1.08001 * 119.99629 * 179.97438 * 6 5 4 38 38 H 1.07997 * 119.99813 * 180.29719 * 7 6 5 39 39 H 1.08995 * 109.47275 * 325.00326 * 9 8 3 40 40 H 1.08997 * 109.47094 * 204.99639 * 9 8 3 41 41 H 0.96994 * 120.00490 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.49885 * 61.29629 * 15 13 12 43 43 H 1.08995 * 109.49911 * 181.39289 * 15 13 12 44 44 H 1.09000 * 109.58803 * 185.56722 * 16 15 13 45 45 H 1.09005 * 109.70996 * 65.21354 * 16 15 13 46 46 H 0.96993 * 120.00012 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58957 * 186.60740 * 26 17 16 48 48 H 1.08998 * 109.58651 * 66.18416 * 26 17 16 49 49 H 1.08996 * 109.47148 * 59.99680 * 29 27 13 50 50 H 1.08996 * 109.47168 * 179.97438 * 29 27 13 51 51 H 1.09003 * 109.47005 * 299.99449 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1929 6 6 2.9535 4.0276 0.0000 7 6 2.6197 3.4126 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9861 0.6379 2.9874 11 8 4.0162 0.6186 2.3475 12 7 2.8967 -0.0524 4.1415 13 6 4.0415 -0.8316 4.6194 14 1 4.9657 -0.3128 4.3648 15 6 4.0319 -2.2110 3.9565 16 6 2.7171 -2.9235 4.2878 17 7 2.5511 -2.9546 5.7473 18 6 2.3232 -4.1375 6.3985 19 1 2.6889 -5.0634 5.9800 20 6 1.6223 -4.1463 7.5966 21 7 0.8901 -3.1073 7.9385 22 14 1.7181 -5.6328 8.7239 23 1 2.6017 -6.6595 8.1152 24 1 2.2708 -5.2217 10.0394 25 1 0.3583 -6.1988 8.9133 26 6 2.6337 -1.6924 6.4948 27 6 3.9496 -0.9936 6.1385 28 1 4.7877 -1.5942 6.4917 29 6 3.9930 0.3841 6.8024 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2569 1.5018 -2.1246 36 1 3.0780 3.8231 -2.1246 37 1 3.3135 5.0458 -0.0001 38 1 2.7186 3.9503 2.1232 39 1 0.9582 0.7682 2.3355 40 1 1.5426 2.1905 3.2322 41 1 2.0731 -0.0368 4.6535 42 1 4.1208 -2.0961 2.8762 43 1 4.8692 -2.8001 4.3303 44 1 2.7462 -3.9423 3.9015 45 1 1.8835 -2.3853 3.8366 46 1 0.4001 -3.1137 8.7755 47 1 2.6078 -1.8989 7.5647 48 1 1.7946 -1.0517 6.2238 49 1 3.1540 0.9840 6.4498 50 1 3.9271 0.2684 7.8842 51 1 4.9284 0.8816 6.5463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942175663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:46 Heat of formation + Delta-G solvation = -24.914629 kcal Electronic energy + Delta-G solvation = -29439.562239 eV Core-core repulsion = 25723.743183 eV Total energy + Delta-G solvation = -3715.819056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44969 -40.32143 -38.89585 -35.89084 -35.17865 -33.85038 -33.51921 -33.26989 -31.31913 -30.34312 -28.57057 -27.50900 -26.82133 -24.73711 -23.96399 -23.07477 -22.57114 -21.90993 -21.04153 -20.06499 -18.74620 -18.14526 -17.31518 -17.09173 -16.81775 -16.49608 -15.96712 -15.83481 -15.65523 -15.28760 -15.03261 -14.73828 -14.61723 -14.58810 -14.34335 -14.29970 -13.87978 -13.81420 -13.56946 -13.12403 -12.97866 -12.93184 -12.81675 -12.74982 -12.64221 -12.55192 -12.47069 -12.14975 -12.13112 -11.78860 -11.69473 -11.67207 -11.53512 -11.43957 -11.11509 -10.83331 -10.53674 -9.90890 -9.65127 -9.43836 -8.64857 -7.86460 -5.29846 0.47173 0.55418 1.46013 1.49557 1.58538 1.74351 2.33494 2.52041 2.95489 3.28248 3.67525 3.71163 3.82626 3.88216 4.01383 4.06658 4.11757 4.15119 4.21512 4.32725 4.35554 4.37398 4.50109 4.55541 4.59306 4.66691 4.69239 4.73500 4.76274 4.78082 4.87476 4.97334 5.03232 5.04884 5.09602 5.10889 5.16656 5.19863 5.26736 5.31233 5.36262 5.39560 5.53465 5.62671 5.65638 5.66196 5.68616 5.78663 5.79997 6.18459 6.41068 6.66577 7.17405 7.34744 7.87467 8.38558 9.19193 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.002998 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.274179 B = 9337.382164 C = 9955.392336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.079 4.079 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.076 4.076 9 C -0.104 4.104 10 C 0.518 3.482 11 O -0.574 6.574 12 N -0.709 5.709 13 C 0.169 3.831 14 H 0.072 0.928 15 C -0.134 4.134 16 C 0.152 3.848 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.060 0.940 20 C -0.043 4.043 21 N -0.927 5.927 22 Si 0.960 3.040 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.293 1.293 26 C 0.189 3.811 27 C -0.116 4.116 28 H 0.067 0.933 29 C -0.131 4.131 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.405 0.595 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.019 0.981 46 H 0.250 0.750 47 H 0.056 0.944 48 H 0.010 0.990 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 13.899 -13.931 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.137 4.137 8 C -0.077 4.077 9 C -0.143 4.143 10 C 0.305 3.695 11 O -0.454 6.454 12 N -0.361 5.361 13 C 0.064 3.936 14 H 0.090 0.910 15 C -0.174 4.174 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.078 0.922 20 C -0.239 4.239 21 N -0.573 5.573 22 Si 0.789 3.211 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.220 1.220 26 C 0.064 3.936 27 C -0.136 4.136 28 H 0.085 0.915 29 C -0.189 4.189 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.242 0.758 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.028 0.972 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.799 13.867 -14.241 19.958 hybrid contribution -0.395 -1.067 1.106 1.587 sum 1.404 12.800 -13.134 18.393 Atomic orbital electron populations 1.21739 0.93441 1.02340 1.02451 1.20538 0.97047 0.92441 1.02360 1.19893 0.98717 0.96111 0.93163 1.21243 1.00217 0.95822 0.97626 1.21420 0.99211 0.94643 0.98992 1.21375 1.00446 1.00968 0.92351 1.21233 0.98834 0.94482 0.99192 1.19294 1.00507 0.94480 0.93370 1.20779 0.96728 1.00501 0.96311 1.20844 0.89509 0.78985 0.80135 1.90670 1.32655 1.64950 1.57129 1.46128 1.17239 1.48792 1.23949 1.20664 0.89030 0.90667 0.93219 0.90965 1.22226 0.99190 0.96498 0.99466 1.20865 0.94329 0.97702 0.84493 1.44286 1.83377 1.04113 1.01301 1.19455 1.28039 0.87178 1.04528 0.92230 1.25642 0.96772 0.99885 1.01637 1.70139 1.31373 1.32031 1.23718 0.85326 0.77000 0.79830 0.78981 1.19662 1.21642 1.21977 1.20599 0.91426 0.84928 0.96689 1.21932 1.00453 0.97620 0.93642 0.91473 1.21647 1.01899 0.95120 1.00226 0.91822 0.92451 0.91717 0.90750 0.92882 0.84854 0.83999 0.84143 0.85177 0.86986 0.85975 0.75815 0.92281 0.91859 0.93700 0.96347 0.94065 0.92589 0.97161 0.92284 0.92767 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.72 71.98 0.70 -1.94 16 2 C -0.09 -1.94 5.38 29.85 0.16 -1.78 16 3 C -0.08 -1.88 5.13 -19.87 -0.10 -1.98 16 4 C -0.13 -2.76 9.68 22.27 0.22 -2.54 16 5 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 6 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 7 C -0.12 -2.62 9.68 22.27 0.22 -2.41 16 8 C -0.08 -1.83 4.37 -19.87 -0.09 -1.92 16 9 C -0.10 -2.35 5.16 29.11 0.15 -2.20 16 10 C 0.52 15.19 6.99 87.66 0.61 15.80 16 11 O -0.57 -20.90 15.70 -3.02 -0.05 -20.95 16 12 N -0.71 -21.07 3.60 -442.39 -1.59 -22.66 16 13 C 0.17 5.60 2.21 45.02 0.10 5.70 16 14 H 0.07 2.45 7.58 -2.38 -0.02 2.43 16 15 C -0.13 -4.77 5.77 30.66 0.18 -4.59 16 16 C 0.15 6.21 6.25 86.35 0.54 6.75 16 17 N -0.61 -29.04 2.99 -699.16 -2.09 -31.13 16 18 C -0.26 -14.02 9.59 84.03 0.81 -13.22 16 19 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 20 C -0.04 -2.34 4.91 84.86 0.42 -1.93 16 21 N -0.93 -52.01 11.19 21.65 0.24 -51.77 16 22 Si 0.96 43.91 29.59 68.60 2.03 45.94 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 C 0.19 8.29 4.30 86.36 0.37 8.66 16 27 C -0.12 -4.05 2.67 -10.72 -0.03 -4.08 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 C -0.13 -3.78 9.05 71.98 0.65 -3.13 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.05 6.80 -2.39 -0.02 1.03 16 32 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 34 H 0.05 1.41 6.42 -2.38 -0.02 1.39 16 35 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.11 2.34 5.62 -2.39 -0.01 2.32 16 40 H 0.12 2.15 8.05 -2.39 -0.02 2.13 16 41 H 0.41 11.78 6.73 -92.71 -0.62 11.16 16 42 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.04 1.86 7.93 -2.39 -0.02 1.84 16 45 H 0.02 0.75 7.75 -2.38 -0.02 0.73 16 46 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 47 H 0.06 2.86 6.04 -2.39 -0.01 2.84 16 48 H 0.01 0.46 6.64 -2.39 -0.02 0.45 16 49 H 0.06 1.59 7.54 -2.39 -0.02 1.57 16 50 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.59 395.93 4.17 -60.42 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.29 Total: 29.47 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.35 Total: -9.31 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -3.45 Total: -105.57 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -64.59 4.17 -60.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942175663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.505 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds