Wall clock time and date at job start Tue Mar 31 2020 16:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47064 * 2 1 4 4 C 1.38250 * 119.99925 * 265.01739 * 3 2 1 5 5 C 1.38217 * 120.00288 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.99490 * 0.02562 * 5 4 3 7 7 C 1.38216 * 120.00207 * 359.69741 * 6 5 4 8 8 C 1.38213 * 120.00081 * 84.99736 * 3 2 1 9 9 C 1.50708 * 119.99830 * 0.02562 * 8 3 2 10 10 C 1.50695 * 109.46820 * 84.99973 * 9 8 3 11 11 O 1.21276 * 120.00411 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00024 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00296 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46129 * 325.00213 * 13 12 10 15 15 C 1.53043 * 109.46105 * 84.97382 * 13 12 10 16 16 C 1.53188 * 109.31388 * 181.38719 * 15 13 12 17 17 N 1.46930 * 108.77567 * 305.36055 * 16 15 13 18 18 C 1.36929 * 120.63299 * 233.58845 * 17 16 15 19 19 H 1.08007 * 119.99860 * 151.83331 * 18 17 16 20 20 C 1.38811 * 120.00221 * 331.83479 * 18 17 16 21 21 N 1.31615 * 119.99690 * 343.07725 * 20 18 17 22 22 Si 1.86802 * 120.00310 * 163.07707 * 20 18 17 23 23 H 1.48501 * 109.46904 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47047 * 119.99868 * 22 20 18 25 25 H 1.48502 * 109.46868 * 240.00119 * 22 20 18 26 26 C 1.46930 * 118.73462 * 53.60852 * 17 16 15 27 27 C 1.53042 * 109.45915 * 205.02535 * 13 12 10 28 28 H 1.08999 * 109.49954 * 298.56653 * 27 13 12 29 29 C 1.53002 * 109.49573 * 58.66788 * 27 13 12 30 30 H 1.09000 * 109.47022 * 300.00531 * 1 2 3 31 31 H 1.09001 * 109.46791 * 60.00082 * 1 2 3 32 32 H 1.08992 * 109.46933 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47335 * 239.99914 * 2 1 3 34 34 H 1.09005 * 109.46502 * 119.99490 * 2 1 3 35 35 H 1.08003 * 120.00033 * 0.02562 * 4 3 2 36 36 H 1.07998 * 120.00363 * 179.97438 * 5 4 3 37 37 H 1.08002 * 119.99775 * 179.97438 * 6 5 4 38 38 H 1.07997 * 119.99914 * 180.29206 * 7 6 5 39 39 H 1.08999 * 109.47127 * 325.00254 * 9 8 3 40 40 H 1.08994 * 109.46997 * 205.00030 * 9 8 3 41 41 H 0.97001 * 119.99473 * 359.97438 * 12 10 9 42 42 H 1.09007 * 109.49662 * 301.34041 * 15 13 12 43 43 H 1.08999 * 109.49911 * 61.43310 * 15 13 12 44 44 H 1.08992 * 109.59172 * 65.15125 * 16 15 13 45 45 H 1.09001 * 109.58967 * 185.57890 * 16 15 13 46 46 H 0.97004 * 120.00287 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.58648 * 66.18024 * 26 17 16 48 48 H 1.08999 * 109.58602 * 186.45656 * 26 17 16 49 49 H 1.08998 * 109.47148 * 59.99684 * 29 27 13 50 50 H 1.09001 * 109.46887 * 180.02562 * 29 27 13 51 51 H 1.08998 * 109.46961 * 299.99547 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1929 6 6 2.9534 4.0276 0.0000 7 6 2.6196 3.4126 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9860 0.6379 2.9874 11 8 4.0161 0.6187 2.3475 12 7 2.8967 -0.0524 4.1415 13 6 4.0436 -0.8264 4.6228 14 1 4.5796 -1.2483 3.7726 15 6 4.9813 0.0894 5.4130 16 6 6.1963 -0.7153 5.8851 17 7 5.7248 -1.8877 6.6348 18 6 6.1852 -2.1384 7.8997 19 1 5.5647 -2.6724 8.6043 20 6 7.4493 -1.7062 8.2766 21 7 8.3278 -1.3621 7.3590 22 14 7.9037 -1.6130 10.0862 23 1 6.7485 -2.0519 10.9097 24 1 9.0651 -2.4995 10.3512 25 1 8.2586 -0.2141 10.4359 26 6 4.7502 -2.7862 6.0010 27 6 3.5514 -1.9581 5.5279 28 1 3.0371 -1.5360 6.3912 29 6 2.5884 -2.8544 4.7467 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 2.2570 1.5018 -2.1246 36 1 3.0780 3.8231 -2.1246 37 1 3.3134 5.0459 -0.0001 38 1 2.7186 3.9504 2.1232 39 1 0.9582 0.7682 2.3355 40 1 1.5425 2.1904 3.2322 41 1 2.0732 -0.0362 4.6538 42 1 5.3130 0.9085 4.7748 43 1 4.4534 0.4920 6.2774 44 1 6.7758 -1.0424 5.0219 45 1 6.8174 -0.0944 6.5308 46 1 9.2114 -1.0605 7.6223 47 1 5.2118 -3.2822 5.1472 48 1 4.4191 -3.5333 6.7223 49 1 3.1040 -3.2772 3.8845 50 1 2.2377 -3.6600 5.3918 51 1 1.7370 -2.2643 4.4076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942175664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:50 Heat of formation + Delta-G solvation = -11.923604 kcal Electronic energy + Delta-G solvation = -28895.534468 eV Core-core repulsion = 25180.278745 eV Total energy + Delta-G solvation = -3715.255723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.33224 -39.14590 -37.51671 -34.51803 -34.41099 -32.82855 -32.43246 -31.17143 -29.96023 -29.57481 -27.67520 -25.86376 -24.89674 -23.97148 -22.55553 -21.84548 -21.00553 -20.72067 -20.05142 -19.19398 -17.03693 -16.58237 -16.55655 -16.17779 -15.77797 -15.11528 -14.78104 -14.50563 -14.09835 -13.90463 -13.83504 -13.61997 -13.55808 -13.27084 -13.19562 -13.02656 -12.80206 -12.61155 -12.27694 -12.16579 -11.92624 -11.91194 -11.47186 -11.43429 -11.29323 -11.06193 -10.93212 -10.80964 -10.79974 -10.63984 -10.32653 -10.20171 -10.00291 -9.77287 -9.76279 -9.43454 -8.84722 -8.65234 -8.63744 -8.40904 -6.67394 -5.77913 -3.21194 1.27088 1.34710 2.85383 3.35590 3.38689 3.45049 3.47097 3.80030 4.49348 4.51366 4.62494 4.78675 4.84295 4.99685 5.01804 5.10189 5.16597 5.22416 5.26856 5.32179 5.37822 5.41665 5.43979 5.50975 5.52255 5.63299 5.72608 5.75705 5.89892 5.92213 5.98784 6.01157 6.09147 6.11576 6.26362 6.28673 6.40536 6.41896 6.44063 6.45905 6.58339 6.63377 6.68500 6.79890 6.94515 6.97222 6.98086 7.38837 7.68472 7.77473 7.80303 8.45237 8.48482 9.21440 9.84838 10.41677 11.30521 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.002705 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.811187 B =10348.704325 C =11237.739764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.059 4.059 9 C -0.108 4.108 10 C 0.510 3.490 11 O -0.529 6.529 12 N -0.725 5.725 13 C 0.158 3.842 14 H 0.080 0.920 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.593 5.593 18 C -0.254 4.254 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.155 3.845 27 C -0.114 4.114 28 H 0.070 0.930 29 C -0.141 4.141 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.393 0.607 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.089 0.911 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.053 0.947 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 6.562 -14.125 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.059 4.059 9 C -0.148 4.148 10 C 0.296 3.704 11 O -0.405 6.405 12 N -0.375 5.375 13 C 0.055 3.945 14 H 0.098 0.902 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.027 3.973 27 C -0.135 4.135 28 H 0.089 0.911 29 C -0.199 4.199 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.227 0.773 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.346 6.576 -14.547 23.574 hybrid contribution 0.030 0.218 1.177 1.198 sum -17.316 6.793 -13.370 22.907 Atomic orbital electron populations 1.21770 0.94776 1.01761 1.02060 1.20568 0.95837 0.92942 1.03260 1.19651 0.98451 0.95667 0.92628 1.20960 1.00271 0.95189 0.97301 1.21085 0.99899 0.94850 0.97977 1.21058 1.00665 0.99988 0.92571 1.20982 0.98611 0.94513 0.98179 1.19115 0.99799 0.93904 0.93123 1.20779 0.97956 1.00146 0.95954 1.20384 0.89258 0.79817 0.80968 1.90742 1.30923 1.62282 1.56544 1.46308 1.17215 1.50360 1.23654 1.21023 0.85824 0.91109 0.96557 0.90156 1.22566 0.99100 0.98544 0.98504 1.20749 0.91321 0.88130 0.95028 1.44107 1.48603 1.23836 1.14939 1.19203 0.96706 1.34877 0.87549 0.91633 1.25065 0.95179 1.01847 0.97540 1.70046 1.04761 1.48404 1.31253 0.86241 0.78055 0.77394 0.85180 1.20271 1.21722 1.21573 1.20890 0.88680 0.91813 0.95874 1.21961 0.98266 0.95896 0.97401 0.91121 1.21765 0.98680 0.99370 1.00091 0.92554 0.92548 0.92298 0.91021 0.90888 0.86317 0.86329 0.86243 0.86249 0.88080 0.88313 0.77322 0.92883 0.92748 0.96205 0.89327 0.93635 0.96275 0.92435 0.92951 0.92798 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.72 37.16 0.36 -0.76 16 2 C -0.09 -0.89 5.38 -27.88 -0.15 -1.04 16 3 C -0.06 -0.74 5.13 -104.62 -0.54 -1.27 16 4 C -0.12 -1.28 9.68 -39.58 -0.38 -1.67 16 5 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 7 C -0.10 -1.22 9.68 -39.58 -0.38 -1.60 16 8 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 9 C -0.11 -1.13 5.16 -29.03 -0.15 -1.28 16 10 C 0.51 7.30 6.99 -10.98 -0.08 7.22 16 11 O -0.53 -10.04 15.70 5.56 0.09 -9.95 16 12 N -0.72 -9.76 4.36 -53.77 -0.23 -10.00 16 13 C 0.16 2.72 1.88 -67.89 -0.13 2.59 16 14 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 15 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 16 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 17 N -0.59 -14.79 2.99 -172.32 -0.52 -15.31 16 18 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 19 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.43 11.20 55.49 0.62 -25.80 16 22 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 C 0.15 3.17 5.80 -3.71 -0.02 3.15 16 27 C -0.11 -1.86 2.46 -90.50 -0.22 -2.09 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 C -0.14 -1.83 9.03 37.16 0.34 -1.50 16 30 H 0.06 0.41 6.80 -51.93 -0.35 0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.07 0.83 6.42 -51.93 -0.33 0.49 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.10 0.83 5.62 -51.93 -0.29 0.54 16 40 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 41 H 0.39 4.11 8.31 -40.82 -0.34 3.77 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.05 0.52 7.36 -51.93 -0.38 0.13 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -32.61 399.88 -10.75 -43.36 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.70 Total: 3.71 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.01 Total: -8.69 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.13 Total: -51.11 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.61 -10.75 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942175664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.438 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds