Wall clock time and date at job start Tue Mar 31 2020 16:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47064 * 2 1 4 4 C 1.38250 * 119.99925 * 265.01739 * 3 2 1 5 5 C 1.38217 * 120.00288 * 179.97438 * 4 3 2 6 6 C 1.38259 * 119.99490 * 0.02562 * 5 4 3 7 7 C 1.38216 * 120.00207 * 359.69741 * 6 5 4 8 8 C 1.38213 * 120.00081 * 84.99736 * 3 2 1 9 9 C 1.50708 * 119.99830 * 0.02562 * 8 3 2 10 10 C 1.50695 * 109.46820 * 84.99973 * 9 8 3 11 11 O 1.21276 * 120.00411 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00024 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00296 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46129 * 325.00213 * 13 12 10 15 15 C 1.53043 * 109.46105 * 84.97382 * 13 12 10 16 16 C 1.53188 * 109.31388 * 181.38719 * 15 13 12 17 17 N 1.46930 * 108.77567 * 305.36055 * 16 15 13 18 18 C 1.36929 * 120.63299 * 233.58845 * 17 16 15 19 19 H 1.08007 * 119.99860 * 151.83331 * 18 17 16 20 20 C 1.38811 * 120.00221 * 331.83479 * 18 17 16 21 21 N 1.31615 * 119.99690 * 343.07725 * 20 18 17 22 22 Si 1.86802 * 120.00310 * 163.07707 * 20 18 17 23 23 H 1.48501 * 109.46904 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47047 * 119.99868 * 22 20 18 25 25 H 1.48502 * 109.46868 * 240.00119 * 22 20 18 26 26 C 1.46930 * 118.73462 * 53.60852 * 17 16 15 27 27 C 1.53042 * 109.45915 * 205.02535 * 13 12 10 28 28 H 1.08999 * 109.49954 * 298.56653 * 27 13 12 29 29 C 1.53002 * 109.49573 * 58.66788 * 27 13 12 30 30 H 1.09000 * 109.47022 * 300.00531 * 1 2 3 31 31 H 1.09001 * 109.46791 * 60.00082 * 1 2 3 32 32 H 1.08992 * 109.46933 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47335 * 239.99914 * 2 1 3 34 34 H 1.09005 * 109.46502 * 119.99490 * 2 1 3 35 35 H 1.08003 * 120.00033 * 0.02562 * 4 3 2 36 36 H 1.07998 * 120.00363 * 179.97438 * 5 4 3 37 37 H 1.08002 * 119.99775 * 179.97438 * 6 5 4 38 38 H 1.07997 * 119.99914 * 180.29206 * 7 6 5 39 39 H 1.08999 * 109.47127 * 325.00254 * 9 8 3 40 40 H 1.08994 * 109.46997 * 205.00030 * 9 8 3 41 41 H 0.97001 * 119.99473 * 359.97438 * 12 10 9 42 42 H 1.09007 * 109.49662 * 301.34041 * 15 13 12 43 43 H 1.08999 * 109.49911 * 61.43310 * 15 13 12 44 44 H 1.08992 * 109.59172 * 65.15125 * 16 15 13 45 45 H 1.09001 * 109.58967 * 185.57890 * 16 15 13 46 46 H 0.97004 * 120.00287 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.58648 * 66.18024 * 26 17 16 48 48 H 1.08999 * 109.58602 * 186.45656 * 26 17 16 49 49 H 1.08998 * 109.47148 * 59.99684 * 29 27 13 50 50 H 1.09001 * 109.46887 * 180.02562 * 29 27 13 51 51 H 1.08998 * 109.46961 * 299.99547 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1929 6 6 2.9534 4.0276 0.0000 7 6 2.6196 3.4126 1.1919 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9860 0.6379 2.9874 11 8 4.0161 0.6187 2.3475 12 7 2.8967 -0.0524 4.1415 13 6 4.0436 -0.8264 4.6228 14 1 4.5796 -1.2483 3.7726 15 6 4.9813 0.0894 5.4130 16 6 6.1963 -0.7153 5.8851 17 7 5.7248 -1.8877 6.6348 18 6 6.1852 -2.1384 7.8997 19 1 5.5647 -2.6724 8.6043 20 6 7.4493 -1.7062 8.2766 21 7 8.3278 -1.3621 7.3590 22 14 7.9037 -1.6130 10.0862 23 1 6.7485 -2.0519 10.9097 24 1 9.0651 -2.4995 10.3512 25 1 8.2586 -0.2141 10.4359 26 6 4.7502 -2.7862 6.0010 27 6 3.5514 -1.9581 5.5279 28 1 3.0371 -1.5360 6.3912 29 6 2.5884 -2.8544 4.7467 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 2.2570 1.5018 -2.1246 36 1 3.0780 3.8231 -2.1246 37 1 3.3134 5.0459 -0.0001 38 1 2.7186 3.9504 2.1232 39 1 0.9582 0.7682 2.3355 40 1 1.5425 2.1904 3.2322 41 1 2.0732 -0.0362 4.6538 42 1 5.3130 0.9085 4.7748 43 1 4.4534 0.4920 6.2774 44 1 6.7758 -1.0424 5.0219 45 1 6.8174 -0.0944 6.5308 46 1 9.2114 -1.0605 7.6223 47 1 5.2118 -3.2822 5.1472 48 1 4.4191 -3.5333 6.7223 49 1 3.1040 -3.2772 3.8845 50 1 2.2377 -3.6600 5.3918 51 1 1.7370 -2.2643 4.4076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942175664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:49 Heat of formation + Delta-G solvation = -29.951624 kcal Electronic energy + Delta-G solvation = -28896.316222 eV Core-core repulsion = 25180.278745 eV Total energy + Delta-G solvation = -3716.037477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38608 -40.24516 -38.97962 -36.16379 -35.18582 -34.20346 -33.46156 -32.92660 -31.61011 -30.35294 -28.66300 -27.41781 -26.60226 -24.71818 -24.00865 -22.88603 -22.64029 -21.69431 -21.26880 -20.61065 -18.76601 -17.93418 -17.55825 -17.02976 -16.99279 -16.67262 -15.95435 -15.70806 -15.59836 -15.47157 -15.01314 -14.70088 -14.57229 -14.56566 -14.34851 -14.28307 -13.89392 -13.82783 -13.59311 -13.10637 -13.02391 -12.96366 -12.79403 -12.72881 -12.63379 -12.61453 -12.28204 -12.14565 -12.06639 -12.01581 -11.67992 -11.66036 -11.56159 -11.53869 -11.26730 -10.82791 -10.58918 -9.93907 -9.67040 -9.45296 -8.72318 -7.88570 -5.35507 0.44973 0.53435 1.46094 1.47551 1.58577 1.73302 2.26937 2.50349 2.93177 3.27318 3.61923 3.69177 3.76867 3.87676 4.01064 4.03845 4.12234 4.13778 4.18343 4.31580 4.36783 4.38963 4.52078 4.55593 4.60327 4.65890 4.72783 4.74472 4.76176 4.78588 4.86118 4.91875 5.02494 5.05092 5.10529 5.11689 5.15595 5.20456 5.25670 5.30817 5.38729 5.42527 5.51619 5.60125 5.61569 5.63354 5.64600 5.68506 5.77210 6.16952 6.36845 6.68423 7.11616 7.38935 7.82480 8.35720 9.18483 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.002705 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.811187 B =10348.704325 C =11237.739764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.078 4.078 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.097 4.097 10 C 0.511 3.489 11 O -0.580 6.580 12 N -0.709 5.709 13 C 0.172 3.828 14 H 0.051 0.949 15 C -0.131 4.131 16 C 0.184 3.816 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.074 0.926 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.261 1.261 24 H -0.294 1.294 25 H -0.292 1.292 26 C 0.149 3.851 27 C -0.099 4.099 28 H 0.081 0.919 29 C -0.133 4.133 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.414 0.586 42 H 0.043 0.957 43 H 0.062 0.938 44 H -0.015 1.015 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.006 0.994 48 H 0.065 0.935 49 H 0.043 0.957 50 H 0.069 0.931 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.684 6.705 -13.813 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.140 4.140 8 C -0.080 4.080 9 C -0.137 4.137 10 C 0.299 3.701 11 O -0.459 6.459 12 N -0.361 5.361 13 C 0.067 3.933 14 H 0.069 0.931 15 C -0.171 4.171 16 C 0.057 3.943 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.092 0.908 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.023 3.977 27 C -0.120 4.120 28 H 0.100 0.900 29 C -0.191 4.191 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.252 0.748 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.003 0.997 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.084 0.916 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.820 6.707 -14.225 26.092 hybrid contribution 1.126 0.158 0.992 1.508 sum -19.694 6.864 -13.234 24.700 Atomic orbital electron populations 1.21737 0.92790 1.02641 1.02602 1.20571 0.97507 0.91912 1.02489 1.19949 0.98556 0.96404 0.92938 1.21266 1.00261 0.95676 0.97904 1.21416 0.99286 0.94879 0.98860 1.21370 1.00598 1.00979 0.92588 1.21259 0.98880 0.94910 0.98977 1.19358 1.00487 0.94271 0.93864 1.20787 0.96491 1.00529 0.95855 1.21100 0.89660 0.79125 0.80246 1.90732 1.33305 1.63919 1.57990 1.46007 1.16763 1.49586 1.23759 1.20573 0.86500 0.91067 0.95204 0.93113 1.22311 0.97900 0.98028 0.98881 1.20442 0.92585 0.88298 0.92950 1.44353 1.49336 1.24768 1.14755 1.19597 0.96715 1.34017 0.88690 0.90833 1.25892 0.95299 1.02233 1.01585 1.70221 1.04971 1.50027 1.33298 0.85175 0.77863 0.76848 0.80372 1.18509 1.22089 1.21878 1.21097 0.89171 0.92108 0.95357 1.21751 0.96945 0.95386 0.97884 0.90045 1.21710 0.98417 0.99457 0.99497 0.91811 0.92218 0.91209 0.91101 0.92352 0.84827 0.84234 0.84546 0.85418 0.85432 0.85686 0.74850 0.93848 0.91899 0.99729 0.92748 0.94207 0.97593 0.91646 0.93804 0.91214 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.72 71.98 0.70 -1.09 16 2 C -0.09 -1.62 5.38 29.85 0.16 -1.46 16 3 C -0.08 -1.72 5.13 -19.87 -0.10 -1.83 16 4 C -0.13 -2.74 9.68 22.27 0.22 -2.52 16 5 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 6 C -0.14 -2.81 10.05 22.27 0.22 -2.59 16 7 C -0.12 -2.71 9.68 22.27 0.22 -2.50 16 8 C -0.08 -1.78 4.37 -19.86 -0.09 -1.87 16 9 C -0.10 -1.77 5.16 29.10 0.15 -1.62 16 10 C 0.51 13.90 6.99 87.65 0.61 14.51 16 11 O -0.58 -22.23 15.70 -3.02 -0.05 -22.28 16 12 N -0.71 -17.55 4.36 -442.42 -1.93 -19.48 16 13 C 0.17 5.81 1.88 45.02 0.08 5.89 16 14 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 15 C -0.13 -5.34 5.65 30.67 0.17 -5.16 16 16 C 0.18 9.47 5.30 86.36 0.46 9.93 16 17 N -0.61 -31.02 2.99 -699.09 -2.09 -33.11 16 18 C -0.26 -14.31 9.58 84.03 0.81 -13.51 16 19 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 20 C -0.06 -3.12 4.92 84.86 0.42 -2.70 16 21 N -0.94 -57.38 11.20 21.65 0.24 -57.14 16 22 Si 0.97 45.18 29.59 68.60 2.03 47.21 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 26 C 0.15 6.06 5.80 86.36 0.50 6.56 16 27 C -0.10 -3.04 2.46 -10.71 -0.03 -3.07 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 C -0.13 -3.03 9.03 71.98 0.65 -2.38 16 30 H 0.06 0.71 6.80 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 34 H 0.06 1.24 6.42 -2.38 -0.02 1.23 16 35 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.13 1.64 5.62 -2.39 -0.01 1.62 16 40 H 0.13 1.64 8.05 -2.39 -0.02 1.62 16 41 H 0.41 7.01 8.31 -92.71 -0.77 6.24 16 42 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 44 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.05 3.15 6.06 -2.39 -0.01 3.14 16 46 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 49 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.08 1.32 7.36 -2.39 -0.02 1.30 16 Total: -1.00 -74.72 399.88 3.71 -71.01 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.14 Total: 21.45 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.38 Total: -7.66 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.78 Total: -109.73 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.72 3.71 -71.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942175664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.058 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds