Wall clock time and date at job start Tue Mar 31 2020 16:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47313 * 2 1 4 4 C 1.38248 * 120.00062 * 269.97356 * 3 2 1 5 5 C 1.38218 * 120.00119 * 179.78854 * 4 3 2 6 6 C 1.38257 * 119.99535 * 0.47130 * 5 4 3 7 7 C 1.38210 * 120.00181 * 359.51373 * 6 5 4 8 8 C 1.50703 * 119.99932 * 180.25644 * 7 6 5 9 9 C 1.50700 * 109.47423 * 89.99583 * 8 7 6 10 10 O 1.21285 * 119.99943 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00424 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00581 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.46119 * 325.00068 * 12 11 9 14 14 C 1.53043 * 109.46170 * 84.96923 * 12 11 9 15 15 C 1.53159 * 109.32460 * 58.64354 * 14 12 11 16 16 N 1.46932 * 108.76993 * 54.64749 * 15 14 12 17 17 C 1.36934 * 120.63136 * 126.36103 * 16 15 14 18 18 H 1.08003 * 120.00466 * 331.84735 * 17 16 15 19 19 C 1.38813 * 119.99600 * 151.84475 * 17 16 15 20 20 N 1.31620 * 119.99986 * 343.08118 * 19 17 16 21 21 Si 1.86800 * 120.00028 * 163.08408 * 19 17 16 22 22 H 1.48501 * 109.47051 * 59.99471 * 21 19 17 23 23 H 1.48498 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46925 * 299.99907 * 21 19 17 25 25 C 1.46923 * 118.73586 * 306.39004 * 16 15 14 26 26 C 1.53042 * 109.46433 * 205.02850 * 12 11 9 27 27 H 1.08998 * 109.49543 * 181.35948 * 26 12 11 28 28 C 1.52998 * 109.49609 * 61.29124 * 26 12 11 29 29 C 1.38223 * 119.99944 * 90.00339 * 3 2 1 30 30 H 1.09003 * 109.47108 * 300.00461 * 1 2 3 31 31 H 1.09003 * 109.47004 * 59.99274 * 1 2 3 32 32 H 1.08998 * 109.47813 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46675 * 239.99810 * 2 1 3 34 34 H 1.09002 * 109.46463 * 120.00188 * 2 1 3 35 35 H 1.07996 * 120.00338 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00234 * 180.26141 * 5 4 3 37 37 H 1.08006 * 119.99687 * 179.78481 * 6 5 4 38 38 H 1.08998 * 109.46831 * 209.99636 * 8 7 6 39 39 H 1.09002 * 109.46931 * 329.99466 * 8 7 6 40 40 H 0.97002 * 119.99819 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.49500 * 178.60807 * 14 12 11 42 42 H 1.09000 * 109.49416 * 298.70813 * 14 12 11 43 43 H 1.08996 * 109.59782 * 294.85819 * 15 14 12 44 44 H 1.09006 * 109.70473 * 174.49903 * 15 14 12 45 45 H 0.97003 * 119.99750 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58280 * 293.82052 * 25 16 15 47 47 H 1.08991 * 109.58721 * 173.39722 * 25 16 15 48 48 H 1.08997 * 109.47050 * 60.00306 * 28 26 12 49 49 H 1.08998 * 109.46810 * 180.02562 * 28 26 12 50 50 H 1.09004 * 109.47459 * 300.00172 * 28 26 12 51 51 H 1.07999 * 119.99765 * 359.97089 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2633 2.0723 -1.1973 5 6 2.7199 3.3769 -1.1973 6 6 2.9550 4.0269 0.0001 7 6 2.7238 3.3757 1.1970 8 6 2.9745 4.0863 2.5021 9 6 1.7187 4.7973 2.9364 10 8 0.7187 4.7337 2.2531 11 7 1.7068 5.5038 4.0840 12 6 0.4859 6.1945 4.5065 13 1 -0.0430 6.5666 3.6289 14 6 -0.4141 5.2190 5.2684 15 6 0.3441 4.6717 6.4814 16 7 0.8266 5.8019 7.2868 17 6 0.5363 5.8810 8.6226 18 1 -0.3652 5.4270 9.0072 19 6 1.4006 6.5445 9.4826 20 7 2.6342 6.8044 9.1045 21 14 0.8128 7.0686 11.1765 22 1 0.3900 5.8711 11.9462 23 1 1.9182 7.7530 11.8942 24 1 -0.3369 7.9979 11.0359 25 6 1.6260 6.8460 6.6314 26 6 0.8533 7.3689 5.4164 27 1 -0.0560 7.8686 5.7504 28 6 1.7262 8.3599 4.6438 29 6 2.2628 2.0723 1.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.0833 1.5633 -2.1326 36 1 2.8963 3.8873 -2.1325 37 1 3.3151 5.0452 0.0001 38 1 3.2618 3.3596 3.2620 39 1 3.7768 4.8126 2.3721 40 1 2.5067 5.5550 4.6303 41 1 -1.3115 5.7387 5.6044 42 1 -0.6944 4.3947 4.6127 43 1 1.1918 4.0753 6.1440 44 1 -0.3219 4.0526 7.0825 45 1 3.2383 7.2678 9.7056 46 1 2.5782 6.4268 6.3061 47 1 1.8039 7.6629 7.3306 48 1 1.1770 8.7294 3.7778 49 1 1.9879 9.1959 5.2923 50 1 2.6359 7.8601 4.3109 51 1 2.0824 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942191183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:53 Heat of formation + Delta-G solvation = -13.202529 kcal Electronic energy + Delta-G solvation = -28783.162150 eV Core-core repulsion = 25067.850968 eV Total energy + Delta-G solvation = -3715.311182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.14443 -39.23402 -37.54067 -34.53217 -34.15707 -32.59242 -32.04711 -31.76781 -29.76072 -29.47112 -27.54486 -25.89083 -25.13199 -24.03852 -22.53026 -21.94651 -21.10978 -20.84646 -19.85733 -18.53601 -17.07125 -16.70937 -16.52955 -15.87500 -15.40042 -15.03708 -14.88020 -14.63043 -14.00238 -13.97103 -13.83084 -13.59405 -13.53122 -13.26037 -13.11401 -13.06978 -12.96959 -12.61086 -12.15153 -12.05778 -11.89840 -11.80997 -11.45600 -11.36294 -11.21534 -11.04811 -10.94762 -10.90537 -10.84047 -10.71024 -10.41063 -10.14705 -9.97306 -9.79494 -9.56478 -9.43578 -8.79030 -8.61614 -8.60140 -8.46762 -6.70341 -5.83712 -3.25684 1.31682 1.38933 2.94730 3.35839 3.41641 3.43317 3.46985 3.88293 4.46370 4.58317 4.63262 4.78712 5.01327 5.06509 5.13063 5.20528 5.22408 5.28726 5.33850 5.37907 5.43512 5.44822 5.52213 5.55169 5.59000 5.67564 5.74084 5.76921 5.85249 6.01306 6.04914 6.07798 6.10114 6.15913 6.21487 6.34308 6.42851 6.46205 6.54267 6.55370 6.56284 6.60313 6.65837 6.78750 6.92748 6.99179 7.04821 7.26941 7.56331 7.75689 7.91370 8.40832 8.57460 9.16991 9.80113 10.36788 11.24722 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.002648 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.207221 B =10572.466386 C =11187.627393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.083 4.083 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.054 4.054 8 C -0.107 4.107 9 C 0.513 3.487 10 O -0.543 6.543 11 N -0.712 5.712 12 C 0.161 3.839 13 H 0.071 0.929 14 C -0.145 4.145 15 C 0.149 3.851 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.179 3.821 26 C -0.128 4.128 27 H 0.077 0.923 28 C -0.138 4.138 29 C -0.102 4.102 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.403 0.597 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.016 0.984 44 H 0.051 0.949 45 H 0.254 0.746 46 H 0.015 0.985 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.054 0.946 50 H 0.049 0.951 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -7.022 -18.233 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.141 4.141 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.055 4.055 8 C -0.147 4.147 9 C 0.299 3.701 10 O -0.420 6.420 11 N -0.365 5.365 12 C 0.057 3.943 13 H 0.089 0.911 14 C -0.185 4.185 15 C 0.022 3.978 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.053 3.947 26 C -0.149 4.149 27 H 0.095 0.905 28 C -0.196 4.196 29 C -0.120 4.120 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.239 0.761 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.108 0.892 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.360 -6.991 -18.580 19.898 hybrid contribution 0.136 0.414 1.218 1.293 sum 1.496 -6.577 -17.363 18.627 Atomic orbital electron populations 1.21750 0.94674 1.01501 1.02531 1.20528 0.96292 0.92676 1.02583 1.19826 0.99099 0.96260 0.93103 1.20948 1.00725 0.95098 0.97284 1.21037 0.99863 0.94912 0.97754 1.20948 1.00533 0.99378 0.92007 1.19275 0.98609 0.93889 0.93688 1.20717 0.97327 1.00505 0.96150 1.20372 0.89642 0.79146 0.80971 1.90689 1.35269 1.61776 1.54278 1.46182 1.15730 1.51355 1.23186 1.20855 0.84884 0.92242 0.96327 0.91088 1.22366 0.98832 0.99008 0.98317 1.20842 0.95548 0.90284 0.91078 1.44047 1.61850 1.20067 1.05459 1.19147 1.02543 1.33455 0.83051 0.91779 1.25023 0.94621 1.02179 0.97708 1.70001 1.03759 1.44415 1.36628 0.86375 0.77688 0.78662 0.84075 1.20909 1.21647 1.21035 1.20778 0.90317 0.92872 0.90716 1.22133 1.00776 0.94408 0.97551 0.90502 1.21712 0.99524 0.99077 0.99283 1.20857 0.99145 0.94394 0.97613 0.92264 0.92641 0.92542 0.91269 0.91095 0.86506 0.86299 0.86395 0.87986 0.88135 0.76121 0.91583 0.92652 0.96583 0.93028 0.93592 0.96665 0.89205 0.93758 0.92662 0.93193 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.08 -0.74 6.06 -27.89 -0.17 -0.91 16 3 C -0.08 -0.92 5.13 -104.63 -0.54 -1.46 16 4 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.31 9.70 -39.58 -0.38 -1.69 16 7 C -0.05 -0.68 4.37 -104.63 -0.46 -1.14 16 8 C -0.11 -1.26 5.83 -29.03 -0.17 -1.43 16 9 C 0.51 7.83 7.79 -10.99 -0.09 7.75 16 10 O -0.54 -10.16 15.70 5.55 0.09 -10.07 16 11 N -0.71 -11.01 3.60 -53.77 -0.19 -11.20 16 12 C 0.16 2.76 2.21 -67.89 -0.15 2.61 16 13 H 0.07 1.26 7.58 -51.93 -0.39 0.87 16 14 C -0.15 -2.64 5.77 -26.63 -0.15 -2.80 16 15 C 0.15 3.07 6.26 -3.72 -0.02 3.05 16 16 N -0.59 -14.12 2.99 -172.34 -0.52 -14.63 16 17 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 18 H 0.06 1.70 7.89 -52.48 -0.41 1.28 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.12 11.20 55.49 0.62 -24.50 16 21 Si 0.90 21.24 29.59 -169.99 -5.03 16.22 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.18 3.92 4.29 -3.71 -0.02 3.90 16 26 C -0.13 -2.28 2.67 -90.50 -0.24 -2.53 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 C -0.14 -2.10 9.05 37.16 0.34 -1.76 16 29 C -0.10 -1.26 9.36 -39.58 -0.37 -1.63 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.40 6.07 6.73 -40.82 -0.27 5.80 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.33 7.74 -51.93 -0.40 -0.07 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.02 0.34 6.64 -51.93 -0.34 0.00 16 47 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 51 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 403.15 15.07 6.08 6.08 Total: -1.00 -30.46 403.15 -10.85 -41.31 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.83 Total: 6.02 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.07 Total: -9.21 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.09 Total: -50.34 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.46 -10.85 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942191183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.108 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds